RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 ZBED6P86452 979 aa15.29■□□□□ 0.04
SKA1-202ENST00000398452 RAPGEF1Q13905 1077 aa15.29■□□□□ 0.04
SKA1-202ENST00000398452 SHHQ15465 462 aa15.29■□□□□ 0.04
SKA1-202ENST00000398452 ZNF699Q32M78 642 aa15.29■□□□□ 0.04
SKA1-202ENST00000398452 C9orf50Q5SZB4 431 aa15.29■□□□□ 0.04
SKA1-202ENST00000398452 KLHDC7AQ5VTJ3 777 aa15.29■□□□□ 0.04
SKA1-202ENST00000398452 ENOSF1Q7L5Y1 443 aa15.29■□□□□ 0.04
SKA1-202ENST00000398452 PPM1KQ8N3J5 372 aa15.29■□□□□ 0.04
SKA1-202ENST00000398452 RSPH1Q8WYR4 309 aa15.29■□□□□ 0.04
SKA1-202ENST00000398452 LPPQ93052 612 aa15.29■□□□□ 0.04
SKA1-202ENST00000398452 ZNF560Q96MR9 790 aa15.29■□□□□ 0.04
SKA1-202ENST00000398452 FAM193BQ96PV7 902 aaPredicted RBP15.29■□□□□ 0.04
SKA1-202ENST00000398452 GAD1Q99259 594 aa15.29■□□□□ 0.04
SKA1-202ENST00000398452 NLRC4Q9NPP4 1024 aa15.29■□□□□ 0.04
SKA1-202ENST00000398452 KANSL3Q9P2N6 904 aa15.29■□□□□ 0.04
SKA1-202ENST00000398452 CAPN11Q9UMQ6 739 aa15.29■□□□□ 0.04
SKA1-202ENST00000398452 INPP5FQ9Y2H2 1132 aa15.29■□□□□ 0.04
SKA1-202ENST00000398452 ABHD14A-ACY1A0A1B0GW23 586 aa15.28■□□□□ 0.04
SKA1-202ENST00000398452 ARL5CA6NH57 179 aa15.28■□□□□ 0.04
SKA1-202ENST00000398452 AMHP03971 560 aa15.28■□□□□ 0.04
SKA1-202ENST00000398452 UCHL3P15374 230 aa15.28■□□□□ 0.04
SKA1-202ENST00000398452 TBXAS1P24557 533 aaPredicted RBP15.28■□□□□ 0.04
SKA1-202ENST00000398452 PNPLA4P41247 253 aa15.28■□□□□ 0.04
SKA1-202ENST00000398452 KCNJ6P48051 423 aa15.28■□□□□ 0.04
SKA1-202ENST00000398452 WNT7BP56706 349 aa15.28■□□□□ 0.04
SKA1-202ENST00000398452 YWHAEP62258 255 aaKnown RBP15.28■□□□□ 0.04
SKA1-202ENST00000398452 GRIK3Q13003 919 aa15.28■□□□□ 0.04
SKA1-202ENST00000398452 XKR4Q5GH76 650 aa15.28■□□□□ 0.04
SKA1-202ENST00000398452 ZNF667Q5HYK9 610 aa15.28■□□□□ 0.04
SKA1-202ENST00000398452 C15orf39Q6ZRI6 1047 aa15.28■□□□□ 0.04
SKA1-202ENST00000398452 MARVELD3Q96A59 401 aa15.28■□□□□ 0.04
SKA1-202ENST00000398452 DNAI2Q9GZS0 605 aa15.28■□□□□ 0.04
SKA1-202ENST00000398452 UBE2TQ9NPD8 197 aaPredicted RBP15.28■□□□□ 0.04
SKA1-202ENST00000398452 FBXL5Q9UKA1 691 aa15.28■□□□□ 0.04
SKA1-202ENST00000398452 DNAJC12Q9UKB3 198 aa15.28■□□□□ 0.04
SKA1-202ENST00000398452 AGAP1Q9UPQ3 857 aa15.28■□□□□ 0.04
SKA1-202ENST00000398452 PTPRJQ12913 1337 aa15.27■□□□□ 0.04
SKA1-202ENST00000398452 MFAP3LO75121 409 aa15.27■□□□□ 0.04
SKA1-202ENST00000398452 GYPCP04921 128 aa15.27■□□□□ 0.04
SKA1-202ENST00000398452 CSF2RAP15509 400 aa15.27■□□□□ 0.04
SKA1-202ENST00000398452 ITGB8P26012 769 aa15.27■□□□□ 0.04
SKA1-202ENST00000398452 POLR2BP30876 1174 aaKnown RBP15.27■□□□□ 0.04
SKA1-202ENST00000398452 TNNC1P63316 161 aa15.27■□□□□ 0.04
SKA1-202ENST00000398452 NOP14P78316 857 aaKnown RBP15.27■□□□□ 0.04
SKA1-202ENST00000398452 FAM189BP81408 668 aa15.27■□□□□ 0.04
SKA1-202ENST00000398452 RNASELQ05823 741 aaKnown RBP15.27■□□□□ 0.04
SKA1-202ENST00000398452 FPGSQ05932 587 aa15.27■□□□□ 0.04
SKA1-202ENST00000398452 TBX2Q13207 712 aaPredicted RBP15.27■□□□□ 0.04
SKA1-202ENST00000398452 SFMBT2Q5VUG0 894 aa15.27■□□□□ 0.04
SKA1-202ENST00000398452 ALKAL1Q6UXT8 129 aa15.27■□□□□ 0.04
SKA1-202ENST00000398452 AGMOQ6ZNB7 445 aa15.27■□□□□ 0.04
SKA1-202ENST00000398452 RRAGAQ7L523 313 aa15.27■□□□□ 0.04
SKA1-202ENST00000398452 NPAS4Q8IUM7 802 aa15.27■□□□□ 0.04
SKA1-202ENST00000398452 CCDC112Q8NEF3 446 aa15.27■□□□□ 0.04
SKA1-202ENST00000398452 OR8K1Q8NGG5 319 aa15.27■□□□□ 0.04
SKA1-202ENST00000398452 IL23AQ9NPF7 189 aa15.27■□□□□ 0.04
SKA1-202ENST00000398452 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.27■□□□□ 0.04
SKA1-202ENST00000398452 MTMR10Q9NXD2 777 aa15.27■□□□□ 0.04
SKA1-202ENST00000398452 MYO6Q9UM54 1294 aa15.27■□□□□ 0.04
SKA1-202ENST00000398452 BAIAP3O94812 1187 aa15.26■□□□□ 0.03
SKA1-202ENST00000398452 STAT1P42224 750 aa15.26■□□□□ 0.03
SKA1-202ENST00000398452 SCNN1GP51170 649 aa15.26■□□□□ 0.03
SKA1-202ENST00000398452 ADKP55263 362 aaKnown RBP15.26■□□□□ 0.03
SKA1-202ENST00000398452 MYL6P60660 151 aa15.26■□□□□ 0.03
SKA1-202ENST00000398452 GPNMBQ14956 572 aa15.26■□□□□ 0.03
SKA1-202ENST00000398452 ARHGAP44Q17R89 818 aa15.26■□□□□ 0.03
SKA1-202ENST00000398452 NOMO2Q5JPE7 1267 aa15.26■□□□□ 0.03
SKA1-202ENST00000398452 ZNF598Q86UK7 904 aaKnown RBP15.26■□□□□ 0.03
SKA1-202ENST00000398452 RTN4RL1Q86UN2 441 aaPredicted RBP15.26■□□□□ 0.03
SKA1-202ENST00000398452 LRRC52Q8N7C0 313 aa15.26■□□□□ 0.03
SKA1-202ENST00000398452 C1orf127Q8N9H9 656 aa15.26■□□□□ 0.03
SKA1-202ENST00000398452 HELQQ8TDG4 1101 aa15.26■□□□□ 0.03
SKA1-202ENST00000398452 SEMA4DQ92854 862 aa15.26■□□□□ 0.03
SKA1-202ENST00000398452 DDX27Q96GQ7 796 aaKnown RBP15.26■□□□□ 0.03
SKA1-202ENST00000398452 HPDLQ96IR7 371 aa15.26■□□□□ 0.03
SKA1-202ENST00000398452 ZFP42Q96MM3 310 aa15.26■□□□□ 0.03
SKA1-202ENST00000398452 PI4K2AQ9BTU6 479 aa15.26■□□□□ 0.03
SKA1-202ENST00000398452 MRPL9Q9BYD2 267 aaKnown RBP15.26■□□□□ 0.03
SKA1-202ENST00000398452 STK33Q9BYT3 514 aa15.26■□□□□ 0.03
SKA1-202ENST00000398452 MTIF3Q9H2K0 278 aaKnown RBP15.26■□□□□ 0.03
SKA1-202ENST00000398452 TANC1Q9C0D5 1861 aa15.25■□□□□ 0.03
SKA1-202ENST00000398452 ZBBXA8MT70 800 aa15.25■□□□□ 0.03
SKA1-202ENST00000398452 OFD1O75665 1012 aa15.25■□□□□ 0.03
SKA1-202ENST00000398452 VNN1O95497 513 aa15.25■□□□□ 0.03
SKA1-202ENST00000398452 ASS1P00966 412 aaKnown RBP15.25■□□□□ 0.03
SKA1-202ENST00000398452 POMCP01189 267 aa15.25■□□□□ 0.03
SKA1-202ENST00000398452 FGBP02675 491 aa15.25■□□□□ 0.03
SKA1-202ENST00000398452 RPL9P32969 192 aaKnown RBP15.25■□□□□ 0.03
SKA1-202ENST00000398452 USP8P40818 1118 aa15.25■□□□□ 0.03
SKA1-202ENST00000398452 GCNT1Q02742 428 aa15.25■□□□□ 0.03
SKA1-202ENST00000398452 ASIC2Q16515 512 aa15.25■□□□□ 0.03
SKA1-202ENST00000398452 SV2CQ496J9 727 aa15.25■□□□□ 0.03
SKA1-202ENST00000398452 IQCEQ6IPM2 695 aa15.25■□□□□ 0.03
SKA1-202ENST00000398452 PSRC1Q6PGN9 363 aaPredicted RBP15.25■□□□□ 0.03
SKA1-202ENST00000398452 LMO3Q8TAP4 145 aa15.25■□□□□ 0.03
SKA1-202ENST00000398452 LINC01599Q8WXQ3 324 aa15.25■□□□□ 0.03
SKA1-202ENST00000398452 FAXDC2Q96IV6 333 aa15.25■□□□□ 0.03
SKA1-202ENST00000398452 UROC1Q96N76 676 aa15.25■□□□□ 0.03
SKA1-202ENST00000398452 ZMAT2Q96NC0 199 aaKnown RBP15.25■□□□□ 0.03
SKA1-202ENST00000398452 PANX2Q96RD6 677 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms