RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 ZNF677Q86XU0 584 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 SPATS2Q86XZ4 545 aaKnown RBP10.28□□□□□ -0.76
COL6A3-204ENST00000392003 REPS2Q8NFH8 660 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 BTBD6Q96KE9 485 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 PLEKHG4BQ96PX9 1271 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 EPN3Q9H201 632 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 XPNPEP1Q9NQW7 623 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 ARHGAP28Q9P2N2 729 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 PCDHB2Q9Y5E7 798 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 MYO1FO00160 1098 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 ZSCAN9O15535 394 aaPredicted RBP10.28□□□□□ -0.76
COL6A3-204ENST00000392003 PEX10O60683 326 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 MYBL1P10243 752 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 MOB2Q70IA6 237 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 CYFIP1Q7L576 1253 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 ANKRD13AQ8IZ07 590 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 PRELID2Q8N945 189 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 CHST13Q8NET6 341 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 C18orf8Q96DM3 657 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 IMPG2Q9BZV3 1241 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 PHACTR1Q9C0D0 580 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 NRBP2Q9NSY0 501 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 PCYOX1Q9UHG3 505 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 ATP2A1O14983 1001 aa10.27□□□□□ -0.76
COL6A3-204ENST00000392003 HLA-DRAP01903 254 aa10.27□□□□□ -0.76
COL6A3-204ENST00000392003 PYGMP11217 842 aa10.27□□□□□ -0.76
COL6A3-204ENST00000392003 PECAM1P16284 738 aaPredicted RBP10.27□□□□□ -0.76
COL6A3-204ENST00000392003 CNTN2Q02246 1040 aa10.27□□□□□ -0.76
COL6A3-204ENST00000392003 PSMD6Q15008 389 aa10.27□□□□□ -0.76
COL6A3-204ENST00000392003 TREML2Q5T2D2 321 aa10.27□□□□□ -0.76
COL6A3-204ENST00000392003 EMC10Q5UCC4 262 aa10.27□□□□□ -0.76
COL6A3-204ENST00000392003 ARMC9Q7Z3E5 817 aa10.27□□□□□ -0.76
COL6A3-204ENST00000392003 ATP8B4Q8TF62 1192 aa10.27□□□□□ -0.76
COL6A3-204ENST00000392003 SYT17Q9BSW7 474 aa10.27□□□□□ -0.76
COL6A3-204ENST00000392003 CENPOQ9BU64 300 aa10.27□□□□□ -0.76
COL6A3-204ENST00000392003 SNCAIPQ9Y6H5 919 aa10.27□□□□□ -0.76
COL6A3-204ENST00000392003 ADGRA3Q8IWK6 1321 aa10.27□□□□□ -0.77
COL6A3-204ENST00000392003 E7EVH7 732 aa10.27□□□□□ -0.77
COL6A3-204ENST00000392003 H0YGN5 161 aa10.27□□□□□ -0.77
COL6A3-204ENST00000392003 CA8P35219 290 aa10.27□□□□□ -0.77
COL6A3-204ENST00000392003 CETN2P41208 172 aa10.27□□□□□ -0.77
COL6A3-204ENST00000392003 PEX5P50542 639 aa10.27□□□□□ -0.77
COL6A3-204ENST00000392003 PPP2R2AP63151 447 aa10.27□□□□□ -0.77
COL6A3-204ENST00000392003 PTGISQ16647 500 aa10.27□□□□□ -0.77
COL6A3-204ENST00000392003 LMBRD2Q68DH5 695 aaPredicted RBP10.27□□□□□ -0.77
COL6A3-204ENST00000392003 ERO1BQ86YB8 467 aa10.27□□□□□ -0.77
COL6A3-204ENST00000392003 TMEM143Q96AN5 459 aa10.27□□□□□ -0.77
COL6A3-204ENST00000392003 MSTO1Q9BUK6 570 aa10.27□□□□□ -0.77
COL6A3-204ENST00000392003 ADAMTS5Q9UNA0 930 aa10.27□□□□□ -0.77
COL6A3-204ENST00000392003 NFS1Q9Y697 457 aa10.27□□□□□ -0.77
COL6A3-204ENST00000392003 MYPNQ86TC9 1320 aa10.27□□□□□ -0.77
COL6A3-204ENST00000392003 TLDC2A0PJX2 215 aa10.27□□□□□ -0.77
COL6A3-204ENST00000392003 COILP38432 576 aaPredicted RBP10.27□□□□□ -0.77
COL6A3-204ENST00000392003 NAMPTP43490 491 aa10.27□□□□□ -0.77
COL6A3-204ENST00000392003 ACOT2P49753 483 aa10.27□□□□□ -0.77
COL6A3-204ENST00000392003 MCCD1P59942 119 aaPredicted RBP10.27□□□□□ -0.77
COL6A3-204ENST00000392003 KCTD2Q14681 263 aa10.27□□□□□ -0.77
COL6A3-204ENST00000392003 SLMAPQ14BN4 828 aa10.27□□□□□ -0.77
COL6A3-204ENST00000392003 SGO2Q562F6 1265 aa10.27□□□□□ -0.77
COL6A3-204ENST00000392003 CLMNQ96JQ2 1002 aa10.27□□□□□ -0.77
COL6A3-204ENST00000392003 PPANQ9NQ55 473 aaKnown RBP10.27□□□□□ -0.77
COL6A3-204ENST00000392003 PDLIM7Q9NR12 457 aa10.27□□□□□ -0.77
COL6A3-204ENST00000392003 RBAKQ9NYW8 714 aaPredicted RBP10.27□□□□□ -0.77
COL6A3-204ENST00000392003 ANKFY1Q9P2R3 1169 aa10.27□□□□□ -0.77
COL6A3-204ENST00000392003 PTPN22Q9Y2R2 807 aa10.27□□□□□ -0.77
COL6A3-204ENST00000392003 PCDHB4Q9Y5E5 795 aa10.27□□□□□ -0.77
COL6A3-204ENST00000392003 FAM169AQ9Y6X4 670 aa10.27□□□□□ -0.77
COL6A3-204ENST00000392003 A0A087WUV0 522 aaPredicted RBP10.26□□□□□ -0.77
COL6A3-204ENST00000392003 RGS20O76081 388 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 STBD1O95210 358 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 HARSP12081 509 aaKnown RBP10.26□□□□□ -0.77
COL6A3-204ENST00000392003 EPHX2P34913 555 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 SLC1A1P43005 524 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 FNTAP49354 379 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 CLNS1AP54105 237 aaKnown RBP10.26□□□□□ -0.77
COL6A3-204ENST00000392003 MAGOHP61326 146 aaKnown RBP10.26□□□□□ -0.77
COL6A3-204ENST00000392003 NOL9Q5SY16 702 aaKnown RBP10.26□□□□□ -0.77
COL6A3-204ENST00000392003 FAM160B1Q5W0V3 765 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 ZNF280DQ6N043 979 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 PPP1R2P3Q6NXS1 205 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 TRIM72Q6ZMU5 477 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 TRIM42Q8IWZ5 723 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 DNERQ8NFT8 737 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 FBXO25Q8TCJ0 367 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 PSPC1Q8WXF1 523 aaKnown RBP10.26□□□□□ -0.77
COL6A3-204ENST00000392003 ELMO3Q96BJ8 720 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 STMN4Q9H169 189 aaPredicted RBP10.26□□□□□ -0.77
COL6A3-204ENST00000392003 PABPC3Q9H361 631 aaKnown RBP10.26□□□□□ -0.77
COL6A3-204ENST00000392003 AVENQ9NQS1 362 aaPredicted RBP10.26□□□□□ -0.77
COL6A3-204ENST00000392003 SRRM3A6NNA2 597 aaPredicted RBP10.26□□□□□ -0.77
COL6A3-204ENST00000392003 NOP56O00567 594 aaKnown RBP10.26□□□□□ -0.77
COL6A3-204ENST00000392003 OSBPP22059 807 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 MAN1A1P33908 653 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 SDR16C5Q8N3Y7 309 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 SLC10A4Q96EP9 437 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 TCHPQ9BT92 498 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 PTGIRP43119 386 aa10.26□□□□□ -0.77
COL6A3-204ENST00000392003 ACTN3Q08043 901 aaPredicted RBP10.26□□□□□ -0.77
COL6A3-204ENST00000392003 KCTD19Q17RG1 926 aaPredicted RBP10.26□□□□□ -0.77
COL6A3-204ENST00000392003 ZACNQ401N2 412 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms