RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 CYTH3O43739 400 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 IL18RAPO95256 599 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 FKBP9O95302 570 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 CD2BP2O95400 341 aaKnown RBP13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 HNRNPCP07910 306 aaKnown RBP eCLIP13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 C6orf10Q5SRN2 563 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 TTC39BQ5VTQ0 682 aaPredicted RBP13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 FKBP9P1Q75LS8 142 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 RNF149Q8NC42 400 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 OSBPL10Q9BXB5 764 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 OSBPL5Q9H0X9 879 aaPredicted RBP13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 RANBP17Q9H2T7 1088 aaKnown RBP13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 SH3BP1Q9Y3L3 701 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 APRTP07741 180 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 ACADSBP45954 432 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 USP10Q14694 798 aaKnown RBP13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 DAB2IPQ5VWQ8 1189 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 GLYCTKQ8IVS8 523 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 DTNBP1Q96EV8 351 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 UVRAGQ9P2Y5 699 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 ZNF200P98182 395 aaPredicted RBP13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 NKX1-1Q15270 411 aaPredicted RBP13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 QRICH1Q2TAL8 776 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 TASP1Q9H6P5 420 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 CYP26A1O43174 497 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 KCNB1Q14721 858 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 STAG2Q8N3U4 1231 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 DIS3LQ8TF46 1054 aaKnown RBP13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 F5H6K3 240 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 NCKAP1LP55160 1127 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 KLRC3Q07444 240 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 SPP2Q13103 211 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 CEP78Q5JTW2 689 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 LRIG3Q6UXM1 1119 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 C4orf22Q6V702 233 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 SEPT12Q8IYM1 358 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 FMR1NBQ8N0W7 255 aaPredicted RBP13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 CCDC134Q9H6E4 229 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 LATS2Q9NRM7 1088 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 KLC4Q9NSK0 619 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 ZC3H7BQ9UGR2 993 aaKnown RBP13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 LZTS3O60299 673 aaPredicted RBP13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 MLNP12872 115 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 CENPAP49450 140 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 PTRHD1Q6GMV3 140 aaKnown RBP13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 STK33Q9BYT3 514 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 NFKBIL1Q9UBC1 381 aaPredicted RBP13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 SPAG6O75602 509 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 CASP1P29466 404 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 STAT5BP51692 787 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 SV2CQ496J9 727 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 MDH1BQ5I0G3 518 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 VPS37AQ8NEZ2 397 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 NPHS2Q9NP85 383 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 RIC8BQ9NVN3 520 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 HDAC6Q9UBN7 1215 aa13.41□□□□□ -0.26
CCDC88C-204ENST00000389857 NMT2O60551 498 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 TOMM70O94826 608 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 ADRA2BP18089 450 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 ITIH2P19823 946 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 UGT3A1Q6NUS8 523 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 DCP1AQ9NPI6 582 aaPredicted RBP13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 NARFQ9UHQ1 456 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 CFAP99D6REC4 459 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 SOAT1P35610 550 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 SGSM1Q2NKQ1 1148 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 TKFCQ3LXA3 575 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 CAPRIN2Q6IMN6 1127 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 OXER1Q8TDS5 423 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 EME1Q96AY2 570 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 AGAP3Q96P47 875 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 TBC1D23Q9NUY8 699 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 PRRG1O14668 218 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 ENO3P13929 434 aaPredicted RBP13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 C16orf72Q14CZ0 275 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 MAPRE1Q15691 268 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 RABGAP1LQ5R372 815 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 IER5Q5VY09 327 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 AGGF1Q8N302 714 aaeCLIP13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 HSPBP1Q9NZL4 362 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 APEX2Q9UBZ4 518 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 ERBB3P21860 1342 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 ATP2C1P98194 919 aaPredicted RBP13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 ALX1Q15699 326 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 LUZP2Q86TE4 346 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 LONP2Q86WA8 852 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 CDR2LQ86X02 465 aaPredicted RBP13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 PRPF18Q99633 342 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 EPN3Q9H201 632 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 SMARCAD1Q9H4L7 1026 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 C20orf96Q9NUD7 363 aaPredicted RBP13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 ZNF711Q9Y462 761 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 ESYT3A0FGR9 886 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 PTK6Q13882 451 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 BYSLQ13895 437 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 TRIP4Q15650 581 aaPredicted RBP13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 HIST2H2ACQ16777 129 aaPredicted RBP13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 ICE2Q659A1 982 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 E4F1Q66K89 784 aaPredicted RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms