RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 FAR2Q96K12 515 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 CNOT3O75175 753 aaKnown RBP12.17□□□□□ -0.46
VPS13A-205ENST00000376636 NDUFAF6Q330K2 333 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 CYP4A22Q5TCH4 519 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 SPICE1Q8N0Z3 855 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 M0QYV0 167 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 DYRK3O43781 588 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 SRGAP2O75044 1071 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 MFN2O95140 757 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 WARSP23381 471 aaKnown RBP12.17□□□□□ -0.46
VPS13A-205ENST00000376636 SPANXN2Q5MJ10 180 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 ATL2Q8NHH9 583 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 TSR3Q9UJK0 312 aaKnown RBP12.17□□□□□ -0.46
VPS13A-205ENST00000376636 ADGRA2Q96PE1 1338 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 TSPAN9O75954 239 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 AP3M2P53677 418 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 STX4Q12846 297 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 STX5Q13190 355 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 TSNQ15631 228 aaKnown RBP12.17□□□□□ -0.46
VPS13A-205ENST00000376636 EDRF1Q3B7T1 1238 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 NLRP10Q86W26 655 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 SLC27A3Q5K4L6 730 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 LINC00301Q8NCQ3 95 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 STKLD1Q8NE28 680 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 MAGED4Q96JG8 741 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 PNMA6FA0A0J9YX94 578 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 PGK2P07205 417 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 UBTFL6P0CB48 400 aaPredicted RBP12.17□□□□□ -0.46
VPS13A-205ENST00000376636 AKT1P31749 480 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 CTCFP49711 727 aaPredicted RBP12.17□□□□□ -0.46
VPS13A-205ENST00000376636 CDH6P55285 790 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 TPI1P60174 286 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 SUPT20HL1Q3ZLR7 823 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 FAM102AQ5T9C2 384 aaPredicted RBP12.17□□□□□ -0.46
VPS13A-205ENST00000376636 SYDE2Q5VT97 1194 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 ADCK2Q7Z695 626 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 CLMNQ96JQ2 1002 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 TMCC3Q9ULS5 477 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 MICAL3Q7RTP6 2002 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 HOXC9P31274 260 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 ZNF200P98182 395 aaPredicted RBP12.17□□□□□ -0.46
VPS13A-205ENST00000376636 EPS8Q12929 822 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 L3MBTL3Q96JM7 780 aaPredicted RBP12.17□□□□□ -0.46
VPS13A-205ENST00000376636 TRIM51Q9BSJ1 452 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 VPS33BQ9H267 617 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 TASP1Q9H6P5 420 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 MAN1C1Q9NR34 630 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 RGS18Q9NS28 235 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 HERC5Q9UII4 1024 aaKnown RBP12.17□□□□□ -0.46
VPS13A-205ENST00000376636 FAM25AB3EWG3 89 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 FAM25CB3EWG5 89 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 FAM25GB3EWG6 89 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 PSTPIP1O43586 416 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 NFIL3Q16649 462 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 MDH1BQ5I0G3 518 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 ATPAF2Q8N5M1 289 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 ARHGEF26Q96DR7 871 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 BMP3P12645 472 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 RFFLQ8WZ73 363 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 PHACTR1Q9C0D0 580 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 VAV3Q9UKW4 847 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 MYOM2P54296 1465 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 USP19O94966 1318 aa12.17□□□□□ -0.46
VPS13A-205ENST00000376636 GSTA3Q16772 222 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 ANKS6Q68DC2 871 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 TWF2Q6IBS0 349 aaKnown RBP12.16□□□□□ -0.46
VPS13A-205ENST00000376636 CATSPER2Q96P56 530 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 XDHP47989 1333 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 DARSP14868 501 aaKnown RBP12.16□□□□□ -0.46
VPS13A-205ENST00000376636 KIAA0408Q6ZU52 694 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 ANKRD65E5RJM6 399 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 POLBP06746 335 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 CCDC130P13994 396 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 CHN1P15882 459 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 RPS7P62081 194 aaKnown RBP12.16□□□□□ -0.46
VPS13A-205ENST00000376636 AP3B2Q13367 1082 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 ZNF496Q96IT1 587 aaPredicted RBP12.16□□□□□ -0.46
VPS13A-205ENST00000376636 IPPQ9Y573 584 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 ALDH1A1P00352 501 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 CATSPER4Q7RTX7 472 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 MEI4A8MW99 385 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 FNTAP49354 379 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 CDK17Q00537 523 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 C10orf53Q8N6V4 93 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 ZNF473Q8WTR7 871 aaKnown RBP12.16□□□□□ -0.46
VPS13A-205ENST00000376636 DHX35Q9H5Z1 703 aaKnown RBP12.16□□□□□ -0.46
VPS13A-205ENST00000376636 CAAP1Q9H8G2 361 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 VTA1Q9NP79 307 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 PIK3CDO00329 1044 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 CCT3P49368 545 aaKnown RBP12.16□□□□□ -0.46
VPS13A-205ENST00000376636 ZNF618Q5T7W0 954 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 CCDC126Q96EE4 140 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 KLHL4Q9C0H6 718 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 C2orf40Q9H1Z8 148 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.16□□□□□ -0.46
VPS13A-205ENST00000376636 FAM47E-STBD1D6RA91 191 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 CYBBP04839 570 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 EIF3EP60228 445 aaKnown RBP12.16□□□□□ -0.46
VPS13A-205ENST00000376636 TAF2Q6P1X5 1199 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 ERP27Q96DN0 273 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms