RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 EXTL3O43909 919 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 HIST1H2ABP04908 130 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 DSG3P32926 999 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 IL9RQ01113 521 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 KIF23Q02241 960 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-202ENST00000375405 BTKQ06187 659 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 MFSD14CQ5VZR4 134 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 C4orf22Q6V702 233 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 LRRC8DQ7L1W4 858 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 HIST3H2AQ7L7L0 130 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 BRSK1Q8TDC3 778 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 ZNF483Q8TF39 744 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-202ENST00000375405 HIST1H2ACQ93077 130 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 OSBPL9Q96SU4 736 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 TEKT3Q9BXF9 490 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 BHMT2Q9H2M3 363 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 RNF121Q9H920 327 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 CLEC4AQ9UMR7 237 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 NFU1Q9UMS0 254 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 SLC12A4Q9UP95 1085 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 NOX1Q9Y5S8 564 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 FGD6Q6ZV73 1430 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 DCLK1O15075 740 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 MED7O43513 233 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 DLGAP3O95886 979 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 CTSEP14091 401 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 NFKB1P19838 968 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 GRK3P35626 688 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 CAPZA1P52907 286 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 PRKAA1Q13131 559 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 NFYCQ13952 458 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 MESDQ14696 234 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 PSMD5Q16401 504 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 MEA1Q16626 185 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 ARHGAP15Q53QZ3 475 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 TYW3Q6IPR3 259 aaKnown RBP4.86□□□□□ -1.63
SCN1A-202ENST00000375405 ACAD10Q6JQN1 1059 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 SCUBE1Q8IWY4 988 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 SAMD3Q8N6K7 520 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 HASPINQ8TF76 798 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 APOL5Q9BWW9 433 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 DENND2AQ9ULE3 1009 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 EFR3BQ9Y2G0 817 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 SMARCA2P51531 1590 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 C15orf38-AP3S2A0A0A6YYH1 394 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 PSDA5PKW4 1024 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-202ENST00000375405 FAM20BO75063 409 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 ACTR2P61160 394 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 SKP1P63208 163 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 CNTN1Q12860 1018 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 LRP8Q14114 963 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 NCF4Q15080 339 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 BEND4Q6ZU67 534 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 SETD3Q86TU7 594 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-202ENST00000375405 OR8H2Q8N162 312 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 COQ8AQ8NI60 647 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 ACAP3Q96P50 834 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 RBCK1Q9BYM8 510 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 ANKRD2Q9GZV1 360 aa4.86□□□□□ -1.63
SCN1A-202ENST00000375405 CUX1P39880 1505 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 MAPK13O15264 365 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 NCK1P16333 377 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 LBPP18428 481 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 GALK1P51570 392 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 PAK2Q13177 524 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 COG2Q14746 738 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 MIS18BP1Q6P0N0 1132 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 SLC2A7Q6PXP3 512 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 RRAGAQ7L523 313 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 KRT28Q7Z3Y7 464 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 CRLF3Q8IUI8 442 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 GSPT2Q8IYD1 628 aaKnown RBP4.85□□□□□ -1.63
SCN1A-202ENST00000375405 CDK20Q8IZL9 346 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 FAM160A2Q8N612 972 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-202ENST00000375405 THOC1Q96FV9 657 aaKnown RBP4.85□□□□□ -1.63
SCN1A-202ENST00000375405 HSPBP1Q9NZL4 362 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 SUCOQ9UBS9 1254 aaKnown RBP4.85□□□□□ -1.63
SCN1A-202ENST00000375405 ANGPTL2Q9UKU9 493 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 WRBO00258 174 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 ATP8B1O43520 1251 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 PPM1BO75688 479 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 ZNF432O94892 652 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 ZBED1O96006 694 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 CYP17A1P05093 508 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 GNAT2P19087 354 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 PLCD1P51178 756 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 UBXN2AP68543 259 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 PTK2Q05397 1052 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 PLD1Q13393 1074 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 CYTH1Q15438 398 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 UBXN11Q5T124 520 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 JPH4Q96JJ6 628 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 RBBP8Q99708 897 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 MYH11P35749 1972 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 RNGTTO60942 597 aaKnown RBP4.85□□□□□ -1.63
SCN1A-202ENST00000375405 HLA-DRAP01903 254 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 LRG1P02750 347 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 MT-ND3P03897 115 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 S100A6P06703 90 aa4.85□□□□□ -1.63
SCN1A-202ENST00000375405 RALAP11233 206 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms