RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 DDX39AO00148 427 aaKnown RBP22.43■■□□□ 1.18
UPF3A-202ENST00000375299 IPO5O00410 1097 aaKnown RBP22.43■■□□□ 1.18
UPF3A-202ENST00000375299 T-ENOLP0DO92 83 aa22.43■■□□□ 1.18
UPF3A-202ENST00000375299 GM2AP17900 193 aa22.43■■□□□ 1.18
UPF3A-202ENST00000375299 ADSSP30520 456 aa22.43■■□□□ 1.18
UPF3A-202ENST00000375299 RNASELQ05823 741 aaKnown RBP22.43■■□□□ 1.18
UPF3A-202ENST00000375299 WASHC2DQ5SRD0 308 aa22.43■■□□□ 1.18
UPF3A-202ENST00000375299 PODNQ7Z5L7 613 aa22.43■■□□□ 1.18
UPF3A-202ENST00000375299 TDRPQ86YL5 185 aa22.43■■□□□ 1.18
UPF3A-202ENST00000375299 C10orf82Q8WW14 230 aa22.43■■□□□ 1.18
UPF3A-202ENST00000375299 FAM118BQ9BPY3 351 aa22.43■■□□□ 1.18
UPF3A-202ENST00000375299 TRABDQ9H4I3 376 aa22.43■■□□□ 1.18
UPF3A-202ENST00000375299 TMEM8AQ9HCN3 771 aa22.43■■□□□ 1.18
UPF3A-202ENST00000375299 UNGP13051 313 aaPredicted RBP22.43■■□□□ 1.18
UPF3A-202ENST00000375299 KLRC2P26717 231 aa22.43■■□□□ 1.18
UPF3A-202ENST00000375299 STAT2P52630 851 aa22.43■■□□□ 1.18
UPF3A-202ENST00000375299 SNRNP35Q16560 246 aaKnown RBP22.43■■□□□ 1.18
UPF3A-202ENST00000375299 C11orf91Q3C1V1 193 aa22.43■■□□□ 1.18
UPF3A-202ENST00000375299 NUDCD1Q96RS6 583 aa22.43■■□□□ 1.18
UPF3A-202ENST00000375299 MRIQ9BWK5 157 aa22.43■■□□□ 1.18
UPF3A-202ENST00000375299 KIAA1586Q9HCI6 787 aa22.43■■□□□ 1.18
UPF3A-202ENST00000375299 GRID1Q9ULK0 1009 aa22.43■■□□□ 1.18
UPF3A-202ENST00000375299 SMG5Q9UPR3 1016 aaKnown RBP22.43■■□□□ 1.18
UPF3A-202ENST00000375299 RASSF2P50749 326 aa22.42■■□□□ 1.18
UPF3A-202ENST00000375299 RBM5P52756 815 aaKnown RBP eCLIP22.42■■□□□ 1.18
UPF3A-202ENST00000375299 JAG1P78504 1218 aa22.42■■□□□ 1.18
UPF3A-202ENST00000375299 ANO7Q6IWH7 933 aa22.42■■□□□ 1.18
UPF3A-202ENST00000375299 ZNF449Q6P9G9 518 aa22.42■■□□□ 1.18
UPF3A-202ENST00000375299 MIER3Q7Z3K6 550 aa22.42■■□□□ 1.18
UPF3A-202ENST00000375299 LRRC8CQ8TDW0 803 aa22.42■■□□□ 1.18
UPF3A-202ENST00000375299 CCDC127Q96BQ5 260 aa22.42■■□□□ 1.18
UPF3A-202ENST00000375299 RIT2Q99578 217 aa22.42■■□□□ 1.18
UPF3A-202ENST00000375299 ST6GALNAC4Q9H4F1 302 aa22.42■■□□□ 1.18
UPF3A-202ENST00000375299 SAYSD1Q9NPB0 183 aa22.42■■□□□ 1.18
UPF3A-202ENST00000375299 GH2P01242 217 aa22.42■■□□□ 1.18
UPF3A-202ENST00000375299 KRT5P13647 590 aa22.42■■□□□ 1.18
UPF3A-202ENST00000375299 ATP6V1C1P21283 382 aa22.42■■□□□ 1.18
UPF3A-202ENST00000375299 EPHB2P29323 1055 aa22.42■■□□□ 1.18
UPF3A-202ENST00000375299 P3H1Q32P28 736 aa22.42■■□□□ 1.18
UPF3A-202ENST00000375299 SPDYAQ5MJ70 313 aa22.42■■□□□ 1.18
UPF3A-202ENST00000375299 LMNTD2Q8IXW0 634 aa22.42■■□□□ 1.18
UPF3A-202ENST00000375299 SH3TC2Q8TF17 1288 aa22.42■■□□□ 1.18
UPF3A-202ENST00000375299 YIPF3Q9GZM5 350 aa22.42■■□□□ 1.18
UPF3A-202ENST00000375299 MYBL1P10243 752 aa22.41■■□□□ 1.18
UPF3A-202ENST00000375299 RARRES1P49788 294 aa22.41■■□□□ 1.18
UPF3A-202ENST00000375299 CCDC174Q6PII3 467 aa22.41■■□□□ 1.18
UPF3A-202ENST00000375299 LARGE2Q8N3Y3 721 aa22.41■■□□□ 1.18
UPF3A-202ENST00000375299 FBXL13Q8NEE6 735 aa22.41■■□□□ 1.18
UPF3A-202ENST00000375299 ASAP3Q8TDY4 903 aa22.41■■□□□ 1.18
UPF3A-202ENST00000375299 TAS1R2Q8TE23 839 aa22.41■■□□□ 1.18
UPF3A-202ENST00000375299 PARD3BQ8TEW8 1205 aa22.41■■□□□ 1.18
UPF3A-202ENST00000375299 TRIM11Q96F44 468 aa22.41■■□□□ 1.18
UPF3A-202ENST00000375299 TTC25Q96NG3 672 aa22.41■■□□□ 1.18
UPF3A-202ENST00000375299 SMC6Q96SB8 1091 aa22.41■■□□□ 1.18
UPF3A-202ENST00000375299 TMX4Q9H1E5 349 aaPredicted RBP22.41■■□□□ 1.18
UPF3A-202ENST00000375299 RAB20Q9NX57 234 aa22.41■■□□□ 1.18
UPF3A-202ENST00000375299 SENP1Q9P0U3 644 aa22.41■■□□□ 1.18
UPF3A-202ENST00000375299 TRAFD1O14545 582 aaPredicted RBP22.41■■□□□ 1.18
UPF3A-202ENST00000375299 PSTPIP1O43586 416 aa22.41■■□□□ 1.18
UPF3A-202ENST00000375299 PROSCO94903 275 aa22.41■■□□□ 1.18
UPF3A-202ENST00000375299 CALCAP01258 141 aa22.41■■□□□ 1.18
UPF3A-202ENST00000375299 FDX1P10109 184 aa22.41■■□□□ 1.18
UPF3A-202ENST00000375299 PKN2Q16513 984 aaKnown RBP22.41■■□□□ 1.18
UPF3A-202ENST00000375299 DAB2IPQ5VWQ8 1189 aa22.41■■□□□ 1.18
UPF3A-202ENST00000375299 PHLDB2Q86SQ0 1253 aa22.41■■□□□ 1.18
UPF3A-202ENST00000375299 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP22.41■■□□□ 1.18
UPF3A-202ENST00000375299 IWS1Q96ST2 819 aa22.41■■□□□ 1.18
UPF3A-202ENST00000375299 OSBPL8Q9BZF1 889 aa22.41■■□□□ 1.18
UPF3A-202ENST00000375299 TRPC5Q9UL62 973 aaPredicted RBP22.41■■□□□ 1.18
UPF3A-202ENST00000375299 RPL26L1Q9UNX3 145 aaKnown RBP22.41■■□□□ 1.18
UPF3A-202ENST00000375299 DYNC1LI1Q9Y6G9 523 aaKnown RBP22.41■■□□□ 1.18
UPF3A-202ENST00000375299 SLX4Q8IY92 1834 aa22.41■■□□□ 1.18
UPF3A-202ENST00000375299 EIF4E1BA6NMX2 242 aaKnown RBP22.4■■□□□ 1.18
UPF3A-202ENST00000375299 POC1B-GALNT4F8VUJ3 575 aa22.4■■□□□ 1.18
UPF3A-202ENST00000375299 SLC16A4O15374 487 aa22.4■■□□□ 1.18
UPF3A-202ENST00000375299 P4HBP07237 508 aaKnown RBP22.4■■□□□ 1.18
UPF3A-202ENST00000375299 KRT15P19012 456 aa22.4■■□□□ 1.18
UPF3A-202ENST00000375299 ATP4AP20648 1035 aa22.4■■□□□ 1.18
UPF3A-202ENST00000375299 PCK1P35558 622 aa22.4■■□□□ 1.18
UPF3A-202ENST00000375299 GSTA5Q7RTV2 222 aa22.4■■□□□ 1.18
UPF3A-202ENST00000375299 ELMO3Q96BJ8 720 aa22.4■■□□□ 1.18
UPF3A-202ENST00000375299 ZHX2Q9Y6X8 837 aa22.4■■□□□ 1.18
UPF3A-202ENST00000375299 COL11A2P13942 1736 aaPredicted RBP22.4■■□□□ 1.18
UPF3A-202ENST00000375299 UMODL1Q5DID0 1318 aa22.4■■□□□ 1.18
UPF3A-202ENST00000375299 EME2A4GXA9 379 aaPredicted RBP22.4■■□□□ 1.18
UPF3A-202ENST00000375299 ABLIM1O14639 778 aa22.4■■□□□ 1.18
UPF3A-202ENST00000375299 CBX6O95503 412 aa22.4■■□□□ 1.18
UPF3A-202ENST00000375299 RPA3P35244 121 aaPredicted RBP22.4■■□□□ 1.18
UPF3A-202ENST00000375299 PCNX4Q63HM2 1172 aa22.4■■□□□ 1.18
UPF3A-202ENST00000375299 ANKS1BQ7Z6G8 1248 aa22.4■■□□□ 1.18
UPF3A-202ENST00000375299 RHOT1Q8IXI2 618 aa22.4■■□□□ 1.18
UPF3A-202ENST00000375299 C4orf33Q8N1A6 199 aa22.4■■□□□ 1.18
UPF3A-202ENST00000375299 NLGN1Q8N2Q7 840 aa22.4■■□□□ 1.18
UPF3A-202ENST00000375299 TOPORSQ9NS56 1045 aaPredicted RBP22.4■■□□□ 1.18
UPF3A-202ENST00000375299 NCKAP1LP55160 1127 aa22.39■■□□□ 1.18
UPF3A-202ENST00000375299 MRPS35P82673 323 aaKnown RBP22.39■■□□□ 1.18
UPF3A-202ENST00000375299 DACT2Q5SW24 774 aa22.39■■□□□ 1.18
UPF3A-202ENST00000375299 STRIP1Q5VSL9 837 aa22.39■■□□□ 1.18
UPF3A-202ENST00000375299 LLGL2Q6P1M3 1020 aa22.39■■□□□ 1.18
UPF3A-202ENST00000375299 TTC8Q8TAM2 541 aa22.39■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms