RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 TIMP1P01033 207 aa16.67■□□□□ 0.26
CCDC40-202ENST00000374876 GOLGA6DP0CG33 693 aa16.67■□□□□ 0.26
CCDC40-202ENST00000374876 C1orf220Q5T0J3 134 aa16.67■□□□□ 0.26
CCDC40-202ENST00000374876 TSEN2Q8NCE0 465 aaKnown RBP16.67■□□□□ 0.26
CCDC40-202ENST00000374876 ZSWIM2Q8NEG5 633 aa16.67■□□□□ 0.26
CCDC40-202ENST00000374876 CASKIN2Q8WXE0 1202 aa16.67■□□□□ 0.26
CCDC40-202ENST00000374876 AP1M1Q9BXS5 423 aa16.67■□□□□ 0.26
CCDC40-202ENST00000374876 NIFKQ9BYG3 293 aaKnown RBP16.67■□□□□ 0.26
CCDC40-202ENST00000374876 GOLGA6AQ9NYA3 693 aa16.67■□□□□ 0.26
CCDC40-202ENST00000374876 GOLGA8IPA6NC78 632 aa16.66■□□□□ 0.26
CCDC40-202ENST00000374876 GOLGA8JA6NMD2 632 aa16.66■□□□□ 0.26
CCDC40-202ENST00000374876 DKC1O60832 514 aaKnown RBP eCLIP16.66■□□□□ 0.26
CCDC40-202ENST00000374876 THPOP40225 353 aa16.66■□□□□ 0.26
CCDC40-202ENST00000374876 NPTX2P47972 431 aa16.66■□□□□ 0.26
CCDC40-202ENST00000374876 SNRNP35Q16560 246 aaKnown RBP16.66■□□□□ 0.26
CCDC40-202ENST00000374876 RASGEF1CQ8N431 466 aa16.66■□□□□ 0.26
CCDC40-202ENST00000374876 TMEM161BQ8NDZ6 487 aa16.66■□□□□ 0.26
CCDC40-202ENST00000374876 FAM76AQ8TAV0 307 aa16.66■□□□□ 0.26
CCDC40-202ENST00000374876 PLEKHO2Q8TD55 490 aa16.66■□□□□ 0.26
CCDC40-202ENST00000374876 DNAJB3Q8WWF6 145 aa16.66■□□□□ 0.26
CCDC40-202ENST00000374876 HVCN1Q96D96 273 aa16.66■□□□□ 0.26
CCDC40-202ENST00000374876 SCLYQ96I15 445 aa16.66■□□□□ 0.26
CCDC40-202ENST00000374876 TMEM117Q9H0C3 514 aa16.66■□□□□ 0.26
CCDC40-202ENST00000374876 FAM49AQ9H0Q0 323 aaPredicted RBP16.66■□□□□ 0.26
CCDC40-202ENST00000374876 THAP2Q9H0W7 228 aa16.66■□□□□ 0.26
CCDC40-202ENST00000374876 KMT5AQ9NQR1 393 aa16.66■□□□□ 0.26
CCDC40-202ENST00000374876 TAS2R14Q9NYV8 317 aa16.66■□□□□ 0.26
CCDC40-202ENST00000374876 DENND3A2RUS2 1198 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 GOLGA8KD6RF30 607 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 CCDC188H7C350 402 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 CKBP12277 381 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 USP8P40818 1118 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 TARBP2Q15633 366 aaKnown RBP16.65■□□□□ 0.26
CCDC40-202ENST00000374876 TRIM71Q2Q1W2 868 aaKnown RBP16.65■□□□□ 0.26
CCDC40-202ENST00000374876 PALB2Q86YC2 1186 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 MAP4K3Q8IVH8 894 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 WHAMMQ8TF30 809 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 SLC20A1Q8WUM9 679 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 KIFAP3Q92845 792 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 CEP170P1Q96L14 293 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 KIFC3Q9BVG8 833 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 WNT8AQ9H1J5 351 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 PMM2O15305 246 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 C22orf31O95567 290 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 ADRB2P07550 413 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 FAM153BP0C7A2 387 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 GUCY2FP51841 1108 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 TMEM62Q0P6H9 643 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 FAM153CQ494X1 144 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 ZNF618Q5T7W0 954 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 CBWD2Q8IUF1 395 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 ARHGEF26Q96DR7 871 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 CEP89Q96ST8 783 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 SH3GL2Q99962 352 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 CYP26B1Q9NR63 512 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 FAM153AQ9UHL3 310 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 EVPLQ92817 2033 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 COL1A2P08123 1366 aa16.65■□□□□ 0.26
CCDC40-202ENST00000374876 FAM170AA1A519 330 aa16.64■□□□□ 0.25
CCDC40-202ENST00000374876 ANKRD63C9JTQ0 380 aa16.64■□□□□ 0.25
CCDC40-202ENST00000374876 SART1O43290 800 aaKnown RBP16.64■□□□□ 0.25
CCDC40-202ENST00000374876 CLSTN1O94985 981 aa16.64■□□□□ 0.25
CCDC40-202ENST00000374876 CTSHP09668 335 aa16.64■□□□□ 0.25
CCDC40-202ENST00000374876 ADSSP30520 456 aa16.64■□□□□ 0.25
CCDC40-202ENST00000374876 BFSP2Q13515 415 aa16.64■□□□□ 0.25
CCDC40-202ENST00000374876 CFAP58Q5T655 872 aa16.64■□□□□ 0.25
CCDC40-202ENST00000374876 EFCAB12Q6NXP0 572 aa16.64■□□□□ 0.25
CCDC40-202ENST00000374876 RHOT2Q8IXI1 618 aa16.64■□□□□ 0.25
CCDC40-202ENST00000374876 LRRC71Q8N4P6 559 aa16.64■□□□□ 0.25
CCDC40-202ENST00000374876 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.64■□□□□ 0.25
CCDC40-202ENST00000374876 CCDC127Q96BQ5 260 aa16.64■□□□□ 0.25
CCDC40-202ENST00000374876 SAAL1Q96ER3 474 aa16.64■□□□□ 0.25
CCDC40-202ENST00000374876 C17orf75Q9HAS0 396 aa16.64■□□□□ 0.25
CCDC40-202ENST00000374876 CSF2RAP15509 400 aa16.63■□□□□ 0.25
CCDC40-202ENST00000374876 MAGEA10P43363 369 aaPredicted RBP16.63■□□□□ 0.25
CCDC40-202ENST00000374876 CUL1Q13616 776 aa16.63■□□□□ 0.25
CCDC40-202ENST00000374876 HLTFQ14527 1009 aaKnown RBP eCLIP16.63■□□□□ 0.25
CCDC40-202ENST00000374876 MFSD5Q6N075 450 aa16.63■□□□□ 0.25
CCDC40-202ENST00000374876 RPUSD2Q8IZ73 545 aaKnown RBP16.63■□□□□ 0.25
CCDC40-202ENST00000374876 PPM1KQ8N3J5 372 aa16.63■□□□□ 0.25
CCDC40-202ENST00000374876 SPIRE2Q8WWL2 714 aa16.63■□□□□ 0.25
CCDC40-202ENST00000374876 DDX47Q9H0S4 455 aaKnown RBP16.63■□□□□ 0.25
CCDC40-202ENST00000374876 ISCUQ9H1K1 167 aa16.63■□□□□ 0.25
CCDC40-202ENST00000374876 CWC15Q9P013 229 aaKnown RBP16.63■□□□□ 0.25
CCDC40-202ENST00000374876 FTLP02792 175 aaPredicted RBP16.63■□□□□ 0.25
CCDC40-202ENST00000374876 IQCF3P0C7M6 154 aa16.63■□□□□ 0.25
CCDC40-202ENST00000374876 CLCN3P51790 818 aa16.63■□□□□ 0.25
CCDC40-202ENST00000374876 MFAP3P55082 362 aa16.63■□□□□ 0.25
CCDC40-202ENST00000374876 TRADDQ15628 312 aa16.63■□□□□ 0.25
CCDC40-202ENST00000374876 KRT39Q6A163 491 aa16.63■□□□□ 0.25
CCDC40-202ENST00000374876 TAF2Q6P1X5 1199 aa16.63■□□□□ 0.25
CCDC40-202ENST00000374876 KIAA0319LQ8IZA0 1049 aa16.63■□□□□ 0.25
CCDC40-202ENST00000374876 MREGQ8N565 214 aa16.63■□□□□ 0.25
CCDC40-202ENST00000374876 EIF1ADQ8N9N8 165 aaKnown RBP16.63■□□□□ 0.25
CCDC40-202ENST00000374876 KAT5Q92993 513 aa16.63■□□□□ 0.25
CCDC40-202ENST00000374876 ZIM3Q96PE6 472 aa16.63■□□□□ 0.25
CCDC40-202ENST00000374876 PPP1R16BQ96T49 567 aa16.63■□□□□ 0.25
CCDC40-202ENST00000374876 LBHD1Q9BQE6 289 aaPredicted RBP16.63■□□□□ 0.25
CCDC40-202ENST00000374876 SLITRK6Q9H5Y7 841 aa16.63■□□□□ 0.25
CCDC40-202ENST00000374876 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms