RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 SLFN12LQ6IEE8 588 aa23.6■■□□□ 1.37
CCDC28B-201ENST00000373602 HSCBQ8IWL3 235 aa23.6■■□□□ 1.37
CCDC28B-201ENST00000373602 APPL2Q8NEU8 664 aa23.6■■□□□ 1.37
CCDC28B-201ENST00000373602 PRSS33Q8NF86 280 aa23.6■■□□□ 1.37
CCDC28B-201ENST00000373602 RSAD2Q8WXG1 361 aa23.6■■□□□ 1.37
CCDC28B-201ENST00000373602 PANK2Q9BZ23 570 aa23.6■■□□□ 1.37
CCDC28B-201ENST00000373602 FBXL5Q9UKA1 691 aa23.6■■□□□ 1.37
CCDC28B-201ENST00000373602 POLIQ9UNA4 740 aa23.6■■□□□ 1.37
CCDC28B-201ENST00000373602 ZFP37Q9Y6Q3 630 aaPredicted RBP23.6■■□□□ 1.37
CCDC28B-201ENST00000373602 DOCK6Q96HP0 2047 aa23.6■■□□□ 1.37
CCDC28B-201ENST00000373602 TISP43B9A030 160 aa23.59■■□□□ 1.37
CCDC28B-201ENST00000373602 M0QZQ0 153 aa23.59■■□□□ 1.37
CCDC28B-201ENST00000373602 HOXD11P31277 338 aaPredicted RBP23.59■■□□□ 1.37
CCDC28B-201ENST00000373602 STAT6P42226 847 aa23.59■■□□□ 1.37
CCDC28B-201ENST00000373602 AARSP49588 968 aaKnown RBP eCLIP23.59■■□□□ 1.37
CCDC28B-201ENST00000373602 CTXN3Q4LDR2 81 aa23.59■■□□□ 1.37
CCDC28B-201ENST00000373602 ADALQ6DHV7 355 aa23.59■■□□□ 1.37
CCDC28B-201ENST00000373602 ZNF280DQ6N043 979 aa23.59■■□□□ 1.37
CCDC28B-201ENST00000373602 ZNF396Q96N95 335 aaPredicted RBP23.59■■□□□ 1.37
CCDC28B-201ENST00000373602 ARHGEF37A1IGU5 675 aa23.58■■□□□ 1.37
CCDC28B-201ENST00000373602 ANHXE9PGG2 379 aa23.58■■□□□ 1.37
CCDC28B-201ENST00000373602 SPTLC2O15270 562 aa23.58■■□□□ 1.37
CCDC28B-201ENST00000373602 PPP6R2O75170 966 aa23.58■■□□□ 1.37
CCDC28B-201ENST00000373602 PDIA4P13667 645 aaKnown RBP23.58■■□□□ 1.37
CCDC28B-201ENST00000373602 GUCY2FP51841 1108 aa23.58■■□□□ 1.37
CCDC28B-201ENST00000373602 NHLH1Q02575 133 aa23.58■■□□□ 1.37
CCDC28B-201ENST00000373602 SPATA1Q5VX52 437 aa23.58■■□□□ 1.37
CCDC28B-201ENST00000373602 FAM212AQ96EL1 285 aa23.58■■□□□ 1.37
CCDC28B-201ENST00000373602 MRPL44Q9H9J2 332 aaKnown RBP23.58■■□□□ 1.37
CCDC28B-201ENST00000373602 TFIP11Q9UBB9 837 aaKnown RBP23.58■■□□□ 1.37
CCDC28B-201ENST00000373602 DNMT3BQ9UBC3 853 aaKnown RBP23.58■■□□□ 1.37
CCDC28B-201ENST00000373602 CDH7Q9ULB5 785 aa23.58■■□□□ 1.37
CCDC28B-201ENST00000373602 MYH15Q9Y2K3 1946 aa23.57■■□□□ 1.36
CCDC28B-201ENST00000373602 FRMD3A2A2Y4 597 aa23.57■■□□□ 1.36
CCDC28B-201ENST00000373602 NARSO43776 548 aaKnown RBP23.57■■□□□ 1.36
CCDC28B-201ENST00000373602 ATF2P15336 505 aa23.57■■□□□ 1.36
CCDC28B-201ENST00000373602 ELF1P32519 619 aa23.57■■□□□ 1.36
CCDC28B-201ENST00000373602 ACOT2P49753 483 aa23.57■■□□□ 1.36
CCDC28B-201ENST00000373602 ARPP19P56211 112 aa23.57■■□□□ 1.36
CCDC28B-201ENST00000373602 POU5F1Q01860 360 aaKnown RBP23.57■■□□□ 1.36
CCDC28B-201ENST00000373602 HTR4Q13639 388 aa23.57■■□□□ 1.36
CCDC28B-201ENST00000373602 TPGS2Q68CL5 300 aa23.57■■□□□ 1.36
CCDC28B-201ENST00000373602 JADE1Q6IE81 842 aa23.57■■□□□ 1.36
CCDC28B-201ENST00000373602 TCEAL8Q8IYN2 117 aa23.57■■□□□ 1.36
CCDC28B-201ENST00000373602 SLC44A3Q8N4M1 653 aa23.57■■□□□ 1.36
CCDC28B-201ENST00000373602 IKZF4Q9H2S9 585 aa23.57■■□□□ 1.36
CCDC28B-201ENST00000373602 OLFML3Q9NRN5 406 aa23.57■■□□□ 1.36
CCDC28B-201ENST00000373602 HCFC1R1Q9NWW0 138 aa23.57■■□□□ 1.36
CCDC28B-201ENST00000373602 AGO2Q9UKV8 859 aaKnown RBP23.57■■□□□ 1.36
CCDC28B-201ENST00000373602 DERAQ9Y315 318 aa23.57■■□□□ 1.36
CCDC28B-201ENST00000373602 OAZ2O95190 189 aa23.56■■□□□ 1.36
CCDC28B-201ENST00000373602 YEATS4O95619 227 aa23.56■■□□□ 1.36
CCDC28B-201ENST00000373602 ADSSP30520 456 aa23.56■■□□□ 1.36
CCDC28B-201ENST00000373602 NUBP1P53384 320 aa23.56■■□□□ 1.36
CCDC28B-201ENST00000373602 POSTNQ15063 836 aa23.56■■□□□ 1.36
CCDC28B-201ENST00000373602 PABPC1LQ4VXU2 614 aaKnown RBP23.56■■□□□ 1.36
CCDC28B-201ENST00000373602 PDILTQ8N807 584 aa23.56■■□□□ 1.36
CCDC28B-201ENST00000373602 BEST2Q8NFU1 509 aa23.56■■□□□ 1.36
CCDC28B-201ENST00000373602 ASB7Q9H672 318 aa23.56■■□□□ 1.36
CCDC28B-201ENST00000373602 TBC1D7Q9P0N9 293 aa23.56■■□□□ 1.36
CCDC28B-201ENST00000373602 KCNH3Q9ULD8 1083 aa23.56■■□□□ 1.36
CCDC28B-201ENST00000373602 EXOC7Q9UPT5 735 aa23.56■■□□□ 1.36
CCDC28B-201ENST00000373602 NFICP08651 508 aa23.55■■□□□ 1.36
CCDC28B-201ENST00000373602 IDEP14735 1019 aa23.55■■□□□ 1.36
CCDC28B-201ENST00000373602 PTPN5P54829 565 aa23.55■■□□□ 1.36
CCDC28B-201ENST00000373602 YWHAHQ04917 246 aaPredicted RBP23.55■■□□□ 1.36
CCDC28B-201ENST00000373602 KCNA1Q09470 495 aa23.55■■□□□ 1.36
CCDC28B-201ENST00000373602 TCF15Q12870 199 aa23.55■■□□□ 1.36
CCDC28B-201ENST00000373602 TMEM132DQ14C87 1099 aa23.55■■□□□ 1.36
CCDC28B-201ENST00000373602 L1TD1Q5T7N2 865 aaKnown RBP23.55■■□□□ 1.36
CCDC28B-201ENST00000373602 ITFG1Q8TB96 612 aa23.55■■□□□ 1.36
CCDC28B-201ENST00000373602 POMGNT1Q8WZA1 660 aa23.55■■□□□ 1.36
CCDC28B-201ENST00000373602 FGF13Q92913 245 aa23.55■■□□□ 1.36
CCDC28B-201ENST00000373602 ACCSQ96QU6 501 aa23.55■■□□□ 1.36
CCDC28B-201ENST00000373602 MFSD1Q9H3U5 465 aa23.55■■□□□ 1.36
CCDC28B-201ENST00000373602 CYP4F11Q9HBI6 524 aa23.55■■□□□ 1.36
CCDC28B-201ENST00000373602 WNT16Q9UBV4 365 aa23.55■■□□□ 1.36
CCDC28B-201ENST00000373602 AFF4Q9UHB7 1163 aaKnown RBP23.55■■□□□ 1.36
CCDC28B-201ENST00000373602 FBXL21Q9UKT6 434 aa23.55■■□□□ 1.36
CCDC28B-201ENST00000373602 MAFFQ9ULX9 164 aa23.55■■□□□ 1.36
CCDC28B-201ENST00000373602 C2CD2Q9Y426 696 aa23.55■■□□□ 1.36
CCDC28B-201ENST00000373602 PCDHB13Q9Y5F0 798 aa23.55■■□□□ 1.36
CCDC28B-201ENST00000373602 NUMBLQ9Y6R0 609 aa23.55■■□□□ 1.36
CCDC28B-201ENST00000373602 NOTCH4Q99466 2003 aa23.54■■□□□ 1.36
CCDC28B-201ENST00000373602 PRRG1O14668 218 aa23.54■■□□□ 1.36
CCDC28B-201ENST00000373602 PPEF2O14830 753 aa23.54■■□□□ 1.36
CCDC28B-201ENST00000373602 GCNT3O95395 438 aa23.54■■□□□ 1.36
CCDC28B-201ENST00000373602 SEC24AO95486 1093 aa23.54■■□□□ 1.36
CCDC28B-201ENST00000373602 LRG1P02750 347 aa23.54■■□□□ 1.36
CCDC28B-201ENST00000373602 HSP90AA1P07900 732 aaKnown RBP23.54■■□□□ 1.36
CCDC28B-201ENST00000373602 ZSCAN22P10073 491 aaPredicted RBP23.54■■□□□ 1.36
CCDC28B-201ENST00000373602 SRFP11831 508 aa23.54■■□□□ 1.36
CCDC28B-201ENST00000373602 FOXD4L5Q5VV16 416 aaPredicted RBP23.54■■□□□ 1.36
CCDC28B-201ENST00000373602 C9orf57Q5W0N0 161 aa23.54■■□□□ 1.36
CCDC28B-201ENST00000373602 ASTLQ6HA08 431 aaPredicted RBP23.54■■□□□ 1.36
CCDC28B-201ENST00000373602 CRELD2Q6UXH1 353 aaPredicted RBP23.54■■□□□ 1.36
CCDC28B-201ENST00000373602 DSTYKQ6XUX3 929 aa23.54■■□□□ 1.36
CCDC28B-201ENST00000373602 TMEM105Q8N8V8 129 aa23.54■■□□□ 1.36
CCDC28B-201ENST00000373602 FOXD4L4Q8WXT5 416 aaPredicted RBP23.54■■□□□ 1.36
CCDC28B-201ENST00000373602 OXCT2Q9BYC2 517 aaPredicted RBP23.54■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms