RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 TRPM8Q7Z2W7 1104 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 DDX42Q86XP3 938 aaKnown RBP eCLIP12.03□□□□□ -0.48
PTPRF-203ENST00000372407 C4orf33Q8N1A6 199 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 SARS2Q9NP81 518 aaKnown RBP12.03□□□□□ -0.48
PTPRF-203ENST00000372407 E5RI56 91 aa12.02□□□□□ -0.48
PTPRF-203ENST00000372407 SMAPO00193 183 aa12.02□□□□□ -0.48
PTPRF-203ENST00000372407 SEC24CP53992 1094 aa12.02□□□□□ -0.48
PTPRF-203ENST00000372407 SGSM1Q2NKQ1 1148 aa12.02□□□□□ -0.48
PTPRF-203ENST00000372407 DNAL1Q4LDG9 190 aa12.02□□□□□ -0.48
PTPRF-203ENST00000372407 KLHDC7AQ5VTJ3 777 aa12.02□□□□□ -0.48
PTPRF-203ENST00000372407 C16orf86Q6ZW13 317 aa12.02□□□□□ -0.48
PTPRF-203ENST00000372407 CLEC10AQ8IUN9 316 aa12.02□□□□□ -0.48
PTPRF-203ENST00000372407 CATSPER1Q8NEC5 780 aa12.02□□□□□ -0.48
PTPRF-203ENST00000372407 LPAR1Q92633 364 aa12.02□□□□□ -0.48
PTPRF-203ENST00000372407 PGBD4Q96DM1 585 aa12.02□□□□□ -0.48
PTPRF-203ENST00000372407 RIT2Q99578 217 aa12.02□□□□□ -0.48
PTPRF-203ENST00000372407 TEX13BQ9BXU2 312 aa12.02□□□□□ -0.48
PTPRF-203ENST00000372407 ADAM33Q9BZ11 813 aa12.02□□□□□ -0.48
PTPRF-203ENST00000372407 CCDC90BQ9GZT6 254 aa12.02□□□□□ -0.48
PTPRF-203ENST00000372407 MED1Q15648 1581 aaPredicted RBP12.02□□□□□ -0.48
PTPRF-203ENST00000372407 ADGRB2O60241 1585 aa12.02□□□□□ -0.49
PTPRF-203ENST00000372407 AP3B1O00203 1094 aa12.02□□□□□ -0.49
PTPRF-203ENST00000372407 SPAG6O75602 509 aa12.02□□□□□ -0.49
PTPRF-203ENST00000372407 SSTR3P32745 418 aaPredicted RBP12.02□□□□□ -0.49
PTPRF-203ENST00000372407 KCNJ1P48048 391 aa12.02□□□□□ -0.49
PTPRF-203ENST00000372407 SERPINB9P50453 376 aa12.02□□□□□ -0.49
PTPRF-203ENST00000372407 UGP2Q16851 508 aa12.02□□□□□ -0.49
PTPRF-203ENST00000372407 RFX8Q6ZV50 586 aa12.02□□□□□ -0.49
PTPRF-203ENST00000372407 APOBEC3FQ8IUX4 373 aaKnown RBP12.02□□□□□ -0.49
PTPRF-203ENST00000372407 KLHL11Q9NVR0 708 aa12.02□□□□□ -0.49
PTPRF-203ENST00000372407 STX18Q9P2W9 335 aaKnown RBP12.02□□□□□ -0.49
PTPRF-203ENST00000372407 AGAP1Q9UPQ3 857 aa12.02□□□□□ -0.49
PTPRF-203ENST00000372407 TMEM120BA0PK00 339 aa12.02□□□□□ -0.49
PTPRF-203ENST00000372407 EIF3DO15371 548 aaKnown RBP eCLIP12.02□□□□□ -0.49
PTPRF-203ENST00000372407 MOCS2O96007 188 aaPredicted RBP12.02□□□□□ -0.49
PTPRF-203ENST00000372407 IL10P22301 178 aa12.02□□□□□ -0.49
PTPRF-203ENST00000372407 BAATQ14032 418 aaPredicted RBP12.02□□□□□ -0.49
PTPRF-203ENST00000372407 COG2Q14746 738 aa12.02□□□□□ -0.49
PTPRF-203ENST00000372407 KIRREL3Q8IZU9 778 aa12.02□□□□□ -0.49
PTPRF-203ENST00000372407 ERP27Q96DN0 273 aa12.02□□□□□ -0.49
PTPRF-203ENST00000372407 ARHGEF26Q96DR7 871 aa12.02□□□□□ -0.49
PTPRF-203ENST00000372407 RPAP3Q9H6T3 665 aaPredicted RBP12.02□□□□□ -0.49
PTPRF-203ENST00000372407 SP110Q9HB58 689 aa12.02□□□□□ -0.49
PTPRF-203ENST00000372407 GPBP1L1Q9HC44 474 aaPredicted RBP12.02□□□□□ -0.49
PTPRF-203ENST00000372407 PRR12Q9ULL5 1215 aa12.02□□□□□ -0.49
PTPRF-203ENST00000372407 PXDNLA1KZ92 1463 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 KDM6AO15550 1401 aaPredicted RBP12.01□□□□□ -0.49
PTPRF-203ENST00000372407 KRT4P19013 534 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 RBP5P82980 135 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 PTPAQ15257 358 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 SMAD1Q15797 465 aaKnown RBP12.01□□□□□ -0.49
PTPRF-203ENST00000372407 STRIP1Q5VSL9 837 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 NOP9Q86U38 636 aaKnown RBP12.01□□□□□ -0.49
PTPRF-203ENST00000372407 TEX2Q8IWB9 1127 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 AGR3Q8TD06 166 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 RMDN2Q96LZ7 410 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 UBA6A0AVT1 1052 aaPredicted RBP12.01□□□□□ -0.49
PTPRF-203ENST00000372407 ENTPD3O75355 529 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 RBP3P10745 1247 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 MAGEA4P43358 317 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 ZNF200P98182 395 aaPredicted RBP12.01□□□□□ -0.49
PTPRF-203ENST00000372407 MXD4Q14582 209 aaPredicted RBP12.01□□□□□ -0.49
PTPRF-203ENST00000372407 RNF219Q5W0B1 726 aaPredicted RBP12.01□□□□□ -0.49
PTPRF-203ENST00000372407 EGFL8Q99944 293 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 NPHS2Q9NP85 383 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 C3orf70A6NLC5 250 aaPredicted RBP12.01□□□□□ -0.49
PTPRF-203ENST00000372407 NR3C2P08235 984 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 ZC2HC1CQ53FD0 456 aaPredicted RBP12.01□□□□□ -0.49
PTPRF-203ENST00000372407 BTBD8Q5XKL5 378 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 ARL8AQ96BM9 186 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 ATXN7L3BQ96GX2 97 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 EIF4E1BA6NMX2 242 aaKnown RBP12.01□□□□□ -0.49
PTPRF-203ENST00000372407 ENO1P06733 434 aaKnown RBP12.01□□□□□ -0.49
PTPRF-203ENST00000372407 KLC1Q07866 573 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 FOXD4Q12950 439 aaPredicted RBP12.01□□□□□ -0.49
PTPRF-203ENST00000372407 MED21Q13503 144 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 SLC29A2Q14542 456 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 FBXO33Q7Z6M2 555 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 RIBC1Q8N443 379 aaPredicted RBP12.01□□□□□ -0.49
PTPRF-203ENST00000372407 DTX3LQ8TDB6 740 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 SEPT1Q8WYJ6 367 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 KCNB2Q92953 911 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 KCNK16Q96T55 309 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 TRIM54Q9BYV2 358 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 AIPL1Q9NZN9 384 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 HACD3Q9P035 362 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 SCHIP1Q9P0W5 487 aaPredicted RBP12.01□□□□□ -0.49
PTPRF-203ENST00000372407 NAGPAQ9UK23 515 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 SNX9Q9Y5X1 595 aa12.01□□□□□ -0.49
PTPRF-203ENST00000372407 ASB14A6NK59 587 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 CCT8L1PA6NM43 557 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 TMCC1O94876 653 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 HMGCS2P54868 508 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 SNRPFP62306 86 aaKnown RBP12□□□□□ -0.49
PTPRF-203ENST00000372407 TRADDQ15628 312 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 TMEM143Q96AN5 459 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 MTBPQ96DY7 904 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 CELF4Q9BZC1 486 aaKnown RBP12□□□□□ -0.49
PTPRF-203ENST00000372407 TMEM8AQ9HCN3 771 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 GTF3C4Q9UKN8 822 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms