RNA–Protein interactions for RNA: ENST00000368531.6

TPM3-211, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 1,115 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-211ENST00000368531 PPM1AP35813 382 aa15□□□□□ -0.01
TPM3-211ENST00000368531 MTIF2P46199 727 aaKnown RBP15□□□□□ -0.01
TPM3-211ENST00000368531 KRT17Q04695 432 aa15□□□□□ -0.01
TPM3-211ENST00000368531 TDRD10Q5VZ19 366 aaKnown RBP15□□□□□ -0.01
TPM3-211ENST00000368531 LRSAM1Q6UWE0 723 aa15□□□□□ -0.01
TPM3-211ENST00000368531 Q7L0L9 218 aa15□□□□□ -0.01
TPM3-211ENST00000368531 FAM114A1Q8IWE2 563 aa15□□□□□ -0.01
TPM3-211ENST00000368531 ELMO3Q96BJ8 720 aa15□□□□□ -0.01
TPM3-211ENST00000368531 C11orf84Q9BUA3 381 aaPredicted RBP15□□□□□ -0.01
TPM3-211ENST00000368531 TSPY26PQ9H489 355 aa15□□□□□ -0.01
TPM3-211ENST00000368531 PRDM12Q9H4Q4 367 aa15□□□□□ -0.01
TPM3-211ENST00000368531 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15□□□□□ -0.018e-7■■■■■ 194.6
TPM3-211ENST00000368531 SIX4Q9UIU6 781 aa15□□□□□ -0.01
TPM3-211ENST00000368531 ADAM28Q9UKQ2 775 aa15□□□□□ -0.01
TPM3-211ENST00000368531 ANO9A1A5B4 782 aa14.99□□□□□ -0.01
TPM3-211ENST00000368531 BECN2A8MW95 431 aa14.99□□□□□ -0.01
TPM3-211ENST00000368531 KCNJ18B7U540 433 aa14.99□□□□□ -0.01
TPM3-211ENST00000368531 C5orf67F2Z3F1 127 aa14.99□□□□□ -0.01
TPM3-211ENST00000368531 PIRO00625 290 aa14.99□□□□□ -0.01
TPM3-211ENST00000368531 IKBKBO14920 756 aa14.99□□□□□ -0.01
TPM3-211ENST00000368531 CST3P01034 146 aaPredicted RBP14.99□□□□□ -0.01
TPM3-211ENST00000368531 CA8P35219 290 aa14.99□□□□□ -0.01
TPM3-211ENST00000368531 CLDN10P78369 228 aa14.99□□□□□ -0.01
TPM3-211ENST00000368531 RBP5P82980 135 aa14.99□□□□□ -0.01
TPM3-211ENST00000368531 TRPC3Q13507 836 aa14.99□□□□□ -0.01
TPM3-211ENST00000368531 KCNJ12Q14500 433 aa14.99□□□□□ -0.01
TPM3-211ENST00000368531 GRIN2CQ14957 1233 aa14.99□□□□□ -0.01
TPM3-211ENST00000368531 FUT10Q6P4F1 479 aa14.99□□□□□ -0.01
TPM3-211ENST00000368531 CD300LGQ6UXG3 332 aa14.99□□□□□ -0.01
TPM3-211ENST00000368531 SV2AQ7L0J3 742 aa14.99□□□□□ -0.01
TPM3-211ENST00000368531 TAS1R1Q7RTX1 841 aa14.99□□□□□ -0.01
TPM3-211ENST00000368531 CEP57Q86XR8 500 aa14.99□□□□□ -0.01
TPM3-211ENST00000368531 DHX40Q8IX18 779 aaKnown RBP14.99□□□□□ -0.01
TPM3-211ENST00000368531 SPPL3Q8TCT6 385 aa14.99□□□□□ -0.01
TPM3-211ENST00000368531 POF1BQ8WVV4 589 aa14.99□□□□□ -0.01
TPM3-211ENST00000368531 B3GALT6Q96L58 329 aa14.99□□□□□ -0.01
TPM3-211ENST00000368531 GPR62Q9BZJ7 368 aa14.99□□□□□ -0.01
TPM3-211ENST00000368531 CBX8Q9HC52 389 aa14.99□□□□□ -0.01
TPM3-211ENST00000368531 ITGA11Q9UKX5 1188 aa14.99□□□□□ -0.01
TPM3-211ENST00000368531 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.99□□□□□ -0.01
TPM3-211ENST00000368531 MYO9BQ13459 2157 aa14.98□□□□□ -0.01
TPM3-211ENST00000368531 SMTNL1A8MU46 457 aa14.98□□□□□ -0.01
TPM3-211ENST00000368531 H3BNC9 293 aa14.98□□□□□ -0.01
TPM3-211ENST00000368531 CDK11BP21127 795 aaKnown RBP14.98□□□□□ -0.01
TPM3-211ENST00000368531 DNAJB1P25685 340 aa14.98□□□□□ -0.01
TPM3-211ENST00000368531 PIK3CAP42336 1068 aa14.98□□□□□ -0.01
TPM3-211ENST00000368531 AP3M2P53677 418 aa14.98□□□□□ -0.01
TPM3-211ENST00000368531 MYL6P60660 151 aa14.98□□□□□ -0.01
TPM3-211ENST00000368531 PLCB3Q01970 1234 aa14.98□□□□□ -0.01
TPM3-211ENST00000368531 NCAPHQ15003 741 aa14.98□□□□□ -0.01
TPM3-211ENST00000368531 TIGD5Q53EQ6 642 aa14.98□□□□□ -0.01
TPM3-211ENST00000368531 FAM171A1Q5VUB5 890 aa14.98□□□□□ -0.01
TPM3-211ENST00000368531 DSTYKQ6XUX3 929 aa14.98□□□□□ -0.01
TPM3-211ENST00000368531 LUZP1Q86V48 1076 aa14.98□□□□□ -0.01
TPM3-211ENST00000368531 TRIM59Q8IWR1 403 aa14.98□□□□□ -0.01
TPM3-211ENST00000368531 VPS52Q8N1B4 723 aa14.98□□□□□ -0.01
TPM3-211ENST00000368531 MICAL1Q8TDZ2 1067 aa14.98□□□□□ -0.01
TPM3-211ENST00000368531 SLC35C1Q96A29 364 aa14.98□□□□□ -0.01
TPM3-211ENST00000368531 BPIFA3Q9BQP9 254 aa14.98□□□□□ -0.01
TPM3-211ENST00000368531 VN1R3Q9BXE9 311 aa14.98□□□□□ -0.01
TPM3-211ENST00000368531 TMEM8AQ9HCN3 771 aa14.98□□□□□ -0.01
TPM3-211ENST00000368531 PUF60Q9UHX1 559 aaKnown RBP14.98□□□□□ -0.01
TPM3-211ENST00000368531 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.98□□□□□ -0.01
TPM3-211ENST00000368531 TMEM265A0A087WTH1 108 aa14.97□□□□□ -0.01
TPM3-211ENST00000368531 CARNS1A5YM72 827 aa14.97□□□□□ -0.01
TPM3-211ENST00000368531 TMEM189-UBE2V1I3L0A0 370 aa14.97□□□□□ -0.01
TPM3-211ENST00000368531 PES1O00541 588 aaKnown RBP14.97□□□□□ -0.01
TPM3-211ENST00000368531 C2CD2LO14523 706 aa14.97□□□□□ -0.01
TPM3-211ENST00000368531 SPTLC1O15269 473 aa14.97□□□□□ -0.01
TPM3-211ENST00000368531 STX10O60499 249 aa14.97□□□□□ -0.01
TPM3-211ENST00000368531 VNN1O95497 513 aa14.97□□□□□ -0.01
TPM3-211ENST00000368531 HLA-DRAP01903 254 aa14.97□□□□□ -0.01
TPM3-211ENST00000368531 PRKCSHP14314 528 aaPredicted RBP14.97□□□□□ -0.01
TPM3-211ENST00000368531 TAF6P49848 677 aa14.97□□□□□ -0.01
TPM3-211ENST00000368531 FXR1P51114 621 aaKnown RBP eCLIP14.97□□□□□ -0.01
TPM3-211ENST00000368531 MARSP56192 900 aaKnown RBP14.97□□□□□ -0.01
TPM3-211ENST00000368531 LILRA4P59901 499 aa14.97□□□□□ -0.01
TPM3-211ENST00000368531 ENPEPQ07075 957 aa14.97□□□□□ -0.01
TPM3-211ENST00000368531 KCNH2Q12809 1159 aa14.97□□□□□ -0.01
TPM3-211ENST00000368531 NCOA4Q13772 614 aa14.97□□□□□ -0.01
TPM3-211ENST00000368531 IQCB1Q15051 598 aa14.97□□□□□ -0.01
TPM3-211ENST00000368531 ZACNQ401N2 412 aa14.97□□□□□ -0.01
TPM3-211ENST00000368531 CBWD6Q4V339 395 aa14.97□□□□□ -0.01
TPM3-211ENST00000368531 TCP11X2Q5H9J9 407 aa14.97□□□□□ -0.01
TPM3-211ENST00000368531 CBWD3Q5JTY5 395 aa14.97□□□□□ -0.01
TPM3-211ENST00000368531 CBWD5Q5RIA9 395 aa14.97□□□□□ -0.01
TPM3-211ENST00000368531 DDX53Q86TM3 631 aaKnown RBP14.97□□□□□ -0.01
TPM3-211ENST00000368531 CXorf38Q8TB03 319 aa14.97□□□□□ -0.01
TPM3-211ENST00000368531 AUTS2Q8WXX7 1259 aa14.97□□□□□ -0.01
TPM3-211ENST00000368531 HPDLQ96IR7 371 aa14.97□□□□□ -0.01
TPM3-211ENST00000368531 ZNF560Q96MR9 790 aa14.97□□□□□ -0.01
TPM3-211ENST00000368531 PI4K2AQ9BTU6 479 aa14.97□□□□□ -0.01
TPM3-211ENST00000368531 TAB2Q9NYJ8 693 aa14.97□□□□□ -0.01
TPM3-211ENST00000368531 VWA8A3KMH1 1905 aa14.97□□□□□ -0.01
TPM3-211ENST00000368531 ATG2AQ2TAZ0 1938 aa14.97□□□□□ -0.01
TPM3-211ENST00000368531 SF3B1O75533 1304 aaKnown RBP eCLIP14.96□□□□□ -0.017e-7■■■■■ 108.6
TPM3-211ENST00000368531 TRAPPC3O43617 180 aa14.96□□□□□ -0.01
TPM3-211ENST00000368531 LRRN2O75325 713 aa14.96□□□□□ -0.01
TPM3-211ENST00000368531 TKTP29401 623 aaKnown RBP14.96□□□□□ -0.01
TPM3-211ENST00000368531 GTF2H1P32780 548 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms