RNA–Protein interactions for RNA: ENST00000354757.4

PCDHB11-201, Transcript of protocadherin beta 11, humanhuman

APPRIS P1 BASIC

Gene PCDHB11, Length 4,198 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB11-201ENST00000354757 NIPA1Q7RTP0 329 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 TADA2BQ86TJ2 420 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 THEM5Q8N1Q8 247 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 PARD3BQ8TEW8 1205 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 RIN2Q8WYP3 895 aaPredicted RBP13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 INPP4AQ96PE3 977 aaPredicted RBP13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 CELF4Q9BZC1 486 aaKnown RBP13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 MYH14Q7Z406 1995 aaKnown RBP13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 STRCQ7RTU9 1775 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 NUP98P52948 1817 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 ADCY3O60266 1144 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 STX2P32856 288 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 ZNF484Q5JVG2 852 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 CCDC137Q6PK04 289 aaKnown RBP13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 B4GALNT4Q76KP1 1039 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 KIAA0319LQ8IZA0 1049 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 MTMR14Q8NCE2 650 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 ZC3H15Q8WU90 426 aaKnown RBP13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 NT5C1AQ9BXI3 368 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 FAM114A2Q9NRY5 505 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 FRMD3A2A2Y4 597 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 KIAA0391O15091 583 aaKnown RBP13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 B4GALT5O43286 388 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 RGMBQ6NW40 437 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 ARHGEF18Q6ZSZ5 1173 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 RHOT1Q8IXI2 618 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 KCTD17Q8N5Z5 321 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 CCDC110Q8TBZ0 833 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 SPIRE2Q8WWL2 714 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 DPP3Q9NY33 737 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 STRIP2Q9ULQ0 834 aa13.09□□□□□ -0.31
PCDHB11-201ENST00000354757 TTI1O43156 1089 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 HMBSP08397 361 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 CYP11B1P15538 503 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 RRM1P23921 792 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 KCNT1Q5JUK3 1230 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 PDZD4Q76G19 769 aaPredicted RBP13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 IRF2BP1Q8IU81 584 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 SAMD3Q8N6K7 520 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 EMC1Q8N766 993 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 MTMR8Q96EF0 704 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 PARVAQ9NVD7 372 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 MRPL42Q9Y6G3 142 aaKnown RBP13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 ASTN1O14525 1302 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 IGLV3-22A0A075B6J6 115 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 A0A1W2PQJ5 194 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 CASTOR2A6NHX0 329 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 H3BQF6 201 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 TJP3O95049 919 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 POMCP01189 267 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 MUTP22033 750 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 GARTP22102 1010 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 CELF3Q5SZQ8 465 aaKnown RBP13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 ANKS4BQ8N8V4 417 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 FUT8Q9BYC5 575 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 TRIM7Q9C029 511 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 ASNSD1Q9NWL6 643 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 CCDC188H7C350 402 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 TADA2AO75478 443 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 GJB6O95452 261 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 ATP5DP30049 168 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 AP3M2P53677 418 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 GLB1LQ6UWU2 654 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 TAOK1Q7L7X3 1001 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 RYBPQ8N488 228 aaPredicted RBP13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 URGCPQ8TCY9 931 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 L3MBTL3Q96JM7 780 aaPredicted RBP13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 TNIP3Q96KP6 325 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 XPNPEP3Q9NQH7 507 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 SMYD2Q9NRG4 433 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 NOVA2Q9UNW9 492 aaKnown RBP13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 TRIM17Q9Y577 477 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 TAF1P21675 1872 aa13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 PRRC2BQ5JSZ5 2229 aaKnown RBP13.08□□□□□ -0.32
PCDHB11-201ENST00000354757 ZNF862O60290 1169 aa13.07□□□□□ -0.32
PCDHB11-201ENST00000354757 ADRB2P07550 413 aa13.07□□□□□ -0.32
PCDHB11-201ENST00000354757 CHADLQ6NUI6 762 aa13.07□□□□□ -0.32
PCDHB11-201ENST00000354757 TMEM161BQ8NDZ6 487 aa13.07□□□□□ -0.32
PCDHB11-201ENST00000354757 HVCN1Q96D96 273 aa13.07□□□□□ -0.32
PCDHB11-201ENST00000354757 PPP1R12CQ9BZL4 782 aa13.07□□□□□ -0.32
PCDHB11-201ENST00000354757 MLXIPLQ9NP71 852 aa13.07□□□□□ -0.32
PCDHB11-201ENST00000354757 CISHQ9NSE2 258 aa13.07□□□□□ -0.32
PCDHB11-201ENST00000354757 NDC80O14777 642 aa13.07□□□□□ -0.32
PCDHB11-201ENST00000354757 TGFB1I1O43294 461 aa13.07□□□□□ -0.32
PCDHB11-201ENST00000354757 ELNP15502 786 aa13.07□□□□□ -0.32
PCDHB11-201ENST00000354757 KCNA3P22001 575 aa13.07□□□□□ -0.32
PCDHB11-201ENST00000354757 ACAT1P24752 427 aaKnown RBP13.07□□□□□ -0.32
PCDHB11-201ENST00000354757 TNFSF9P41273 254 aa13.07□□□□□ -0.32
PCDHB11-201ENST00000354757 SARNPP82979 210 aaKnown RBP13.07□□□□□ -0.32
PCDHB11-201ENST00000354757 TMED2Q15363 201 aa13.07□□□□□ -0.32
PCDHB11-201ENST00000354757 KDELC2Q7Z4H8 507 aa13.07□□□□□ -0.32
PCDHB11-201ENST00000354757 P3H4Q92791 437 aa13.07□□□□□ -0.32
PCDHB11-201ENST00000354757 SRGAP2BP0DMP2 458 aa13.07□□□□□ -0.32
PCDHB11-201ENST00000354757 IRX4P78413 519 aa13.07□□□□□ -0.32
PCDHB11-201ENST00000354757 FSCN1Q16658 493 aaKnown RBP13.07□□□□□ -0.32
PCDHB11-201ENST00000354757 DEFB128Q7Z7B8 93 aa13.07□□□□□ -0.32
PCDHB11-201ENST00000354757 FBF1Q8TES7 1133 aa13.07□□□□□ -0.32
PCDHB11-201ENST00000354757 CABS1Q96KC9 395 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms