RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 TCERG1LQ5VWI1 586 aa23.92■■□□□ 1.42
SHMT1-203ENST00000354098 TAS1R1Q7RTX1 841 aa23.92■■□□□ 1.42
SHMT1-203ENST00000354098 USP37Q86T82 979 aa23.92■■□□□ 1.42
SHMT1-203ENST00000354098 CNOT6LQ96LI5 555 aaKnown RBP23.92■■□□□ 1.42
SHMT1-203ENST00000354098 GPR62Q9BZJ7 368 aa23.92■■□□□ 1.42
SHMT1-203ENST00000354098 NAT10Q9H0A0 1025 aaKnown RBP23.92■■□□□ 1.42
SHMT1-203ENST00000354098 THAP9Q9H5L6 903 aa23.92■■□□□ 1.42
SHMT1-203ENST00000354098 METTL14Q9HCE5 456 aaKnown RBP23.92■■□□□ 1.42
SHMT1-203ENST00000354098 ITGA11Q9UKX5 1188 aa23.92■■□□□ 1.42
SHMT1-203ENST00000354098 AGAP1Q9UPQ3 857 aa23.92■■□□□ 1.42
SHMT1-203ENST00000354098 GTF3C5Q9Y5Q8 519 aaPredicted RBP23.92■■□□□ 1.42
SHMT1-203ENST00000354098 CARNS1A5YM72 827 aa23.92■■□□□ 1.42
SHMT1-203ENST00000354098 TMEM189-UBE2V1I3L0A0 370 aa23.92■■□□□ 1.42
SHMT1-203ENST00000354098 I3L4J1 428 aa23.92■■□□□ 1.42
SHMT1-203ENST00000354098 LPXNO60711 386 aa23.92■■□□□ 1.42
SHMT1-203ENST00000354098 CSPG5O95196 566 aa23.92■■□□□ 1.42
SHMT1-203ENST00000354098 GNA14O95837 355 aa23.92■■□□□ 1.42
SHMT1-203ENST00000354098 CST3P01034 146 aaPredicted RBP23.92■■□□□ 1.42
SHMT1-203ENST00000354098 MARSP56192 900 aaKnown RBP23.92■■□□□ 1.42
SHMT1-203ENST00000354098 KRT17Q04695 432 aa23.92■■□□□ 1.42
SHMT1-203ENST00000354098 TDRD10Q5VZ19 366 aaKnown RBP23.92■■□□□ 1.42
SHMT1-203ENST00000354098 GPR153Q6NV75 609 aa23.92■■□□□ 1.42
SHMT1-203ENST00000354098 AOPEPQ8N6M6 819 aa23.92■■□□□ 1.42
SHMT1-203ENST00000354098 POF1BQ8WVV4 589 aa23.92■■□□□ 1.42
SHMT1-203ENST00000354098 SLC35C1Q96A29 364 aa23.92■■□□□ 1.42
SHMT1-203ENST00000354098 PLXNA4Q9HCM2 1894 aa23.91■■□□□ 1.42
SHMT1-203ENST00000354098 EFEMP2O95967 443 aa23.91■■□□□ 1.42
SHMT1-203ENST00000354098 ZNF165P49910 485 aa23.91■■□□□ 1.42
SHMT1-203ENST00000354098 MYL5Q02045 173 aa23.91■■□□□ 1.42
SHMT1-203ENST00000354098 ENPEPQ07075 957 aa23.91■■□□□ 1.42
SHMT1-203ENST00000354098 CAMK1Q14012 370 aa23.91■■□□□ 1.42
SHMT1-203ENST00000354098 NCAPHQ15003 741 aa23.91■■□□□ 1.42
SHMT1-203ENST00000354098 FUT10Q6P4F1 479 aa23.91■■□□□ 1.42
SHMT1-203ENST00000354098 SV2AQ7L0J3 742 aa23.91■■□□□ 1.42
SHMT1-203ENST00000354098 DDX53Q86TM3 631 aaKnown RBP23.91■■□□□ 1.42
SHMT1-203ENST00000354098 FANCLQ9NW38 375 aa23.91■■□□□ 1.42
SHMT1-203ENST00000354098 SPTLC1O15269 473 aa23.9■■□□□ 1.42
SHMT1-203ENST00000354098 AP3M2P53677 418 aa23.9■■□□□ 1.42
SHMT1-203ENST00000354098 LILRA4P59901 499 aa23.9■■□□□ 1.42
SHMT1-203ENST00000354098 BIRC3Q13489 604 aa23.9■■□□□ 1.42
SHMT1-203ENST00000354098 C15orf39Q6ZRI6 1047 aa23.9■■□□□ 1.42
SHMT1-203ENST00000354098 TRIM59Q8IWR1 403 aa23.9■■□□□ 1.42
SHMT1-203ENST00000354098 DHX40Q8IX18 779 aaKnown RBP23.9■■□□□ 1.42
SHMT1-203ENST00000354098 B3GALT6Q96L58 329 aa23.9■■□□□ 1.42
SHMT1-203ENST00000354098 BPIFA3Q9BQP9 254 aa23.9■■□□□ 1.42
SHMT1-203ENST00000354098 NUB1Q9Y5A7 615 aa23.9■■□□□ 1.42
SHMT1-203ENST00000354098 VNN1O95497 513 aa23.89■■□□□ 1.42
SHMT1-203ENST00000354098 RBP5P82980 135 aa23.89■■□□□ 1.42
SHMT1-203ENST00000354098 ZACNQ401N2 412 aa23.89■■□□□ 1.42
SHMT1-203ENST00000354098 TIGD5Q53EQ6 642 aa23.89■■□□□ 1.42
SHMT1-203ENST00000354098 PHACTR2O75167 634 aa23.89■■□□□ 1.41
SHMT1-203ENST00000354098 ERVFC1P60507 584 aa23.89■■□□□ 1.41
SHMT1-203ENST00000354098 RNF168Q8IYW5 571 aaPredicted RBP23.89■■□□□ 1.41
SHMT1-203ENST00000354098 VPS52Q8N1B4 723 aa23.89■■□□□ 1.41
SHMT1-203ENST00000354098 DEFB123Q8N688 67 aa23.89■■□□□ 1.41
SHMT1-203ENST00000354098 HSD3B7Q9H2F3 369 aa23.89■■□□□ 1.41
SHMT1-203ENST00000354098 PUF60Q9UHX1 559 aaKnown RBP23.89■■□□□ 1.41
SHMT1-203ENST00000354098 LZTS1Q9Y250 596 aa23.89■■□□□ 1.41
SHMT1-203ENST00000354098 CBWD6Q4V339 395 aa23.88■■□□□ 1.41
SHMT1-203ENST00000354098 CBWD3Q5JTY5 395 aa23.88■■□□□ 1.41
SHMT1-203ENST00000354098 CBWD5Q5RIA9 395 aa23.88■■□□□ 1.41
SHMT1-203ENST00000354098 LRSAM1Q6UWE0 723 aa23.88■■□□□ 1.41
SHMT1-203ENST00000354098 ELMO3Q96BJ8 720 aa23.88■■□□□ 1.41
SHMT1-203ENST00000354098 TMEM8AQ9HCN3 771 aa23.88■■□□□ 1.41
SHMT1-203ENST00000354098 SF3B1O75533 1304 aaKnown RBP eCLIP23.88■■□□□ 1.418e-11■■■■■ 206.8
SHMT1-203ENST00000354098 COL4A4P53420 1690 aaPredicted RBP23.88■■□□□ 1.41
SHMT1-203ENST00000354098 GTF2H1P32780 548 aa23.87■■□□□ 1.41
SHMT1-203ENST00000354098 IRS1P35568 1242 aa23.87■■□□□ 1.41
SHMT1-203ENST00000354098 TAF6P49848 677 aa23.87■■□□□ 1.41
SHMT1-203ENST00000354098 MYL6P60660 151 aa23.87■■□□□ 1.41
SHMT1-203ENST00000354098 UBE3AQ05086 875 aa23.87■■□□□ 1.41
SHMT1-203ENST00000354098 IQCB1Q15051 598 aa23.87■■□□□ 1.41
SHMT1-203ENST00000354098 FAM171A1Q5VUB5 890 aa23.87■■□□□ 1.41
SHMT1-203ENST00000354098 CDKAL1Q5VV42 579 aa23.87■■□□□ 1.41
SHMT1-203ENST00000354098 FAM114A1Q8IWE2 563 aa23.87■■□□□ 1.41
SHMT1-203ENST00000354098 CBX8Q9HC52 389 aa23.87■■□□□ 1.41
SHMT1-203ENST00000354098 PCDHGC5Q9Y5F6 944 aa23.87■■□□□ 1.41
SHMT1-203ENST00000354098 UTP18Q9Y5J1 556 aaKnown RBP eCLIP23.87■■□□□ 1.41
SHMT1-203ENST00000354098 TRANK1O15050 2925 aa23.87■■□□□ 1.41
SHMT1-203ENST00000354098 KCNJ18B7U540 433 aa23.86■■□□□ 1.41
SHMT1-203ENST00000354098 LRRN2O75325 713 aa23.86■■□□□ 1.41
SHMT1-203ENST00000354098 SOD2P04179 222 aa23.86■■□□□ 1.41
SHMT1-203ENST00000354098 AARSP49588 968 aaKnown RBP eCLIP23.86■■□□□ 1.41
SHMT1-203ENST00000354098 TRPC3Q13507 836 aa23.86■■□□□ 1.41
SHMT1-203ENST00000354098 NCOA4Q13772 614 aa23.86■■□□□ 1.41
SHMT1-203ENST00000354098 ADGRE1Q14246 886 aa23.86■■□□□ 1.41
SHMT1-203ENST00000354098 KCNJ12Q14500 433 aa23.86■■□□□ 1.41
SHMT1-203ENST00000354098 KRT39Q6A163 491 aa23.86■■□□□ 1.41
SHMT1-203ENST00000354098 CEP57Q86XR8 500 aa23.86■■□□□ 1.41
SHMT1-203ENST00000354098 LRRC52Q8N7C0 313 aa23.86■■□□□ 1.41
SHMT1-203ENST00000354098 TAS1R2Q8TE23 839 aa23.86■■□□□ 1.41
SHMT1-203ENST00000354098 AUTS2Q8WXX7 1259 aa23.86■■□□□ 1.41
SHMT1-203ENST00000354098 HPDLQ96IR7 371 aa23.86■■□□□ 1.41
SHMT1-203ENST00000354098 TLR9Q9NR96 1032 aa23.86■■□□□ 1.41
SHMT1-203ENST00000354098 MAGEC2Q9UBF1 373 aaPredicted RBP23.86■■□□□ 1.41
SHMT1-203ENST00000354098 SCN1AP35498 2009 aa23.86■■□□□ 1.41
SHMT1-203ENST00000354098 KPNA7A9QM74 516 aa23.86■■□□□ 1.41
SHMT1-203ENST00000354098 TRAPPC3O43617 180 aa23.86■■□□□ 1.41
SHMT1-203ENST00000354098 STX10O60499 249 aa23.86■■□□□ 1.41
SHMT1-203ENST00000354098 MTIF2P46199 727 aaKnown RBP23.86■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms