RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 CGRRF1Q99675 332 aa9.91□□□□□ -0.82
USP4-202ENST00000351842 SMYD3Q9H7B4 428 aa9.91□□□□□ -0.82
USP4-202ENST00000351842 KIAA1586Q9HCI6 787 aa9.91□□□□□ -0.82
USP4-202ENST00000351842 DNAJC12Q9UKB3 198 aa9.91□□□□□ -0.82
USP4-202ENST00000351842 C9IYK1 514 aa9.9□□□□□ -0.82
USP4-202ENST00000351842 DDHD2O94830 711 aa9.9□□□□□ -0.82
USP4-202ENST00000351842 PLEKP08567 350 aaPredicted RBP9.9□□□□□ -0.82
USP4-202ENST00000351842 MAGEA10P43363 369 aaPredicted RBP9.9□□□□□ -0.82
USP4-202ENST00000351842 IFRD2Q12894 506 aaPredicted RBP9.9□□□□□ -0.82
USP4-202ENST00000351842 COBLL1Q53SF7 1204 aa9.9□□□□□ -0.82
USP4-202ENST00000351842 PHLDB3Q6NSJ2 640 aa9.9□□□□□ -0.82
USP4-202ENST00000351842 DSTYKQ6XUX3 929 aa9.9□□□□□ -0.82
USP4-202ENST00000351842 TMEM173Q86WV6 379 aaPredicted RBP9.9□□□□□ -0.82
USP4-202ENST00000351842 SLC9A9Q8IVB4 645 aa9.9□□□□□ -0.82
USP4-202ENST00000351842 BEST2Q8NFU1 509 aa9.9□□□□□ -0.82
USP4-202ENST00000351842 AUTS2Q8WXX7 1259 aa9.9□□□□□ -0.82
USP4-202ENST00000351842 BORCS6Q96GS4 357 aa9.9□□□□□ -0.82
USP4-202ENST00000351842 MFSD14AQ96MC6 490 aa9.9□□□□□ -0.82
USP4-202ENST00000351842 CHORDC1Q9UHD1 332 aaPredicted RBP9.9□□□□□ -0.82
USP4-202ENST00000351842 LUC7L2Q9Y383 392 aaKnown RBP9.9□□□□□ -0.82
USP4-202ENST00000351842 LRRC53A6NM62 1247 aa9.9□□□□□ -0.82
USP4-202ENST00000351842 GOLGA6L6A8MZA4 724 aa9.9□□□□□ -0.82
USP4-202ENST00000351842 H0YGN5 161 aa9.9□□□□□ -0.82
USP4-202ENST00000351842 VNN1O95497 513 aa9.9□□□□□ -0.82
USP4-202ENST00000351842 GYPCP04921 128 aa9.9□□□□□ -0.82
USP4-202ENST00000351842 PSMC1P62191 440 aaKnown RBP9.9□□□□□ -0.82
USP4-202ENST00000351842 TSR1Q2NL82 804 aaKnown RBP9.9□□□□□ -0.82
USP4-202ENST00000351842 VSTM4Q8IW00 320 aa9.9□□□□□ -0.82
USP4-202ENST00000351842 OR6B3Q8NGW1 331 aa9.9□□□□□ -0.82
USP4-202ENST00000351842 RNPC3Q96LT9 517 aaKnown RBP9.9□□□□□ -0.82
USP4-202ENST00000351842 FAM161BQ96MY7 647 aa9.9□□□□□ -0.82
USP4-202ENST00000351842 NT5C1BQ96P26 610 aa9.9□□□□□ -0.82
USP4-202ENST00000351842 DESI2Q9BSY9 194 aa9.9□□□□□ -0.82
USP4-202ENST00000351842 MKNK1Q9BUB5 465 aa9.9□□□□□ -0.82
USP4-202ENST00000351842 TSPYL2Q9H2G4 693 aaPredicted RBP9.9□□□□□ -0.82
USP4-202ENST00000351842 TMEM8AQ9HCN3 771 aa9.9□□□□□ -0.82
USP4-202ENST00000351842 FAM49BQ9NUQ9 324 aa9.9□□□□□ -0.82
USP4-202ENST00000351842 TBC1D13Q9NVG8 400 aa9.9□□□□□ -0.82
USP4-202ENST00000351842 TFR2Q9UP52 801 aa9.9□□□□□ -0.82
USP4-202ENST00000351842 NR2E3Q9Y5X4 410 aa9.9□□□□□ -0.82
USP4-202ENST00000351842 STYXL1Q9Y6J8 313 aa9.9□□□□□ -0.82
USP4-202ENST00000351842 LCHNA4D1U4 455 aa9.9□□□□□ -0.83
USP4-202ENST00000351842 UCHL3P15374 230 aa9.9□□□□□ -0.83
USP4-202ENST00000351842 AXLP30530 894 aa9.9□□□□□ -0.83
USP4-202ENST00000351842 ABCD1P33897 745 aa9.9□□□□□ -0.83
USP4-202ENST00000351842 TNNC1P63316 161 aa9.9□□□□□ -0.83
USP4-202ENST00000351842 PTPROQ16827 1216 aa9.9□□□□□ -0.83
USP4-202ENST00000351842 NOMO2Q5JPE7 1267 aa9.9□□□□□ -0.83
USP4-202ENST00000351842 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.9□□□□□ -0.83
USP4-202ENST00000351842 USP38Q8NB14 1042 aa9.9□□□□□ -0.83
USP4-202ENST00000351842 C3orf58Q8NDZ4 430 aa9.9□□□□□ -0.83
USP4-202ENST00000351842 GSTCDQ8NEC7 633 aa9.9□□□□□ -0.83
USP4-202ENST00000351842 CACTINQ8WUQ7 758 aaKnown RBP9.9□□□□□ -0.83
USP4-202ENST00000351842 PGBD4Q96DM1 585 aa9.9□□□□□ -0.83
USP4-202ENST00000351842 FBXL18Q96ME1 805 aa9.9□□□□□ -0.83
USP4-202ENST00000351842 UBE2OQ9C0C9 1292 aaKnown RBP9.9□□□□□ -0.83
USP4-202ENST00000351842 DEF6Q9H4E7 631 aa9.9□□□□□ -0.83
USP4-202ENST00000351842 APOBEC3GQ9HC16 384 aaKnown RBP9.9□□□□□ -0.83
USP4-202ENST00000351842 TRMT1Q9NXH9 659 aaKnown RBP9.9□□□□□ -0.83
USP4-202ENST00000351842 SIX4Q9UIU6 781 aa9.9□□□□□ -0.83
USP4-202ENST00000351842 PCDHB4Q9Y5E5 795 aa9.9□□□□□ -0.83
USP4-202ENST00000351842 SLC4A7Q9Y6M7 1214 aa9.9□□□□□ -0.83
USP4-202ENST00000351842 CYP26A1O43174 497 aa9.89□□□□□ -0.83
USP4-202ENST00000351842 TLL1O43897 1013 aa9.89□□□□□ -0.83
USP4-202ENST00000351842 WDR5P61964 334 aaKnown RBP9.89□□□□□ -0.83
USP4-202ENST00000351842 MTF1Q14872 753 aa9.89□□□□□ -0.83
USP4-202ENST00000351842 DRAP1Q14919 205 aaPredicted RBP9.89□□□□□ -0.83
USP4-202ENST00000351842 ZACNQ401N2 412 aa9.89□□□□□ -0.83
USP4-202ENST00000351842 ZNF667Q5HYK9 610 aa9.89□□□□□ -0.83
USP4-202ENST00000351842 E4F1Q66K89 784 aaPredicted RBP9.89□□□□□ -0.83
USP4-202ENST00000351842 IQCEQ6IPM2 695 aa9.89□□□□□ -0.83
USP4-202ENST00000351842 RPUSD2Q8IZ73 545 aaKnown RBP9.89□□□□□ -0.83
USP4-202ENST00000351842 URGCPQ8TCY9 931 aa9.89□□□□□ -0.83
USP4-202ENST00000351842 RGS18Q9NS28 235 aa9.89□□□□□ -0.83
USP4-202ENST00000351842 TTC3P53804 2025 aa9.89□□□□□ -0.83
USP4-202ENST00000351842 SPTLC1O15269 473 aa9.89□□□□□ -0.83
USP4-202ENST00000351842 TADA2AO75478 443 aa9.89□□□□□ -0.83
USP4-202ENST00000351842 SHHQ15465 462 aa9.89□□□□□ -0.83
USP4-202ENST00000351842 CT47A1Q5JQC4 288 aaPredicted RBP9.89□□□□□ -0.83
USP4-202ENST00000351842 EP400NLQ6ZTU2 488 aa9.89□□□□□ -0.83
USP4-202ENST00000351842 WDR49Q8IV35 697 aa9.89□□□□□ -0.83
USP4-202ENST00000351842 STKLD1Q8NE28 680 aa9.89□□□□□ -0.83
USP4-202ENST00000351842 PGLYRP2Q96PD5 576 aa9.89□□□□□ -0.83
USP4-202ENST00000351842 CHST12Q9NRB3 414 aa9.89□□□□□ -0.83
USP4-202ENST00000351842 CGNQ9P2M7 1197 aaKnown RBP9.89□□□□□ -0.83
USP4-202ENST00000351842 HMGXB4Q9UGU5 601 aa9.89□□□□□ -0.83
USP4-202ENST00000351842 TRANK1O15050 2925 aa9.88□□□□□ -0.83
USP4-202ENST00000351842 FOXN3O00409 490 aaPredicted RBP9.88□□□□□ -0.83
USP4-202ENST00000351842 PODXLO00592 558 aa9.88□□□□□ -0.83
USP4-202ENST00000351842 C4BPAP04003 597 aaKnown RBP9.88□□□□□ -0.83
USP4-202ENST00000351842 OR4Q2P0C623 313 aa9.88□□□□□ -0.83
USP4-202ENST00000351842 ATP2A2P16615 1042 aaKnown RBP9.88□□□□□ -0.83
USP4-202ENST00000351842 RPL17P18621 184 aaKnown RBP9.88□□□□□ -0.83
USP4-202ENST00000351842 CNKSR3Q6P9H4 555 aa9.88□□□□□ -0.83
USP4-202ENST00000351842 C12orf56Q8IXR9 622 aa9.88□□□□□ -0.83
USP4-202ENST00000351842 MICAL1Q8TDZ2 1067 aa9.88□□□□□ -0.83
USP4-202ENST00000351842 CHP1Q99653 195 aa9.88□□□□□ -0.83
USP4-202ENST00000351842 FTHL17Q9BXU8 183 aa9.88□□□□□ -0.83
USP4-202ENST00000351842 KIAA0355O15063 1070 aa9.88□□□□□ -0.83
USP4-202ENST00000351842 KIF4AO95239 1232 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms