RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 ACAD10Q6JQN1 1059 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 GSTA5Q7RTV2 222 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 PARD3BQ8TEW8 1205 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 MAML1Q92585 1016 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 CCDC77Q9BR77 488 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 SAYSD1Q9NPB0 183 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 DPPA5A6NC42 116 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 TCEA3O75764 348 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 TPBGLP0DKB5 382 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 SSR1P43307 286 aaKnown RBP23.75■■□□□ 1.39
TRIM28-202ENST00000341753 MAGEA4P43358 317 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 CCNG1P51959 295 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 THEMIS2Q5TEJ8 643 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 ANO7Q6IWH7 933 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 ANKS1BQ7Z6G8 1248 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 GLIS1Q8NBF1 620 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 SPDYE1Q8NFV5 336 aaPredicted RBP23.75■■□□□ 1.39
TRIM28-202ENST00000341753 GRAMD1AQ96CP6 724 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 SLC7A6OSQ96CW6 309 aaPredicted RBP23.75■■□□□ 1.39
TRIM28-202ENST00000341753 CYP39A1Q9NYL5 469 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 MROH7Q68CQ1 1323 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 SLC16A4O15374 487 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 WFS1O76024 890 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 GCAP28676 217 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 RPA3P35244 121 aaPredicted RBP23.75■■□□□ 1.39
TRIM28-202ENST00000341753 SESN3P58005 492 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 P3H1Q32P28 736 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 TAS1R2Q8TE23 839 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 GRK7Q8WTQ7 553 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 STK32AQ8WU08 396 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 ACCSQ96QU6 501 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 TMOD2Q9NZR1 351 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 USH1CQ9Y6N9 552 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 A6NHS1 94 aa23.74■■□□□ 1.39
TRIM28-202ENST00000341753 MAP3K13O43283 966 aa23.74■■□□□ 1.39
TRIM28-202ENST00000341753 GRIN3BO60391 1043 aa23.74■■□□□ 1.39
TRIM28-202ENST00000341753 NPM3O75607 178 aaKnown RBP23.74■■□□□ 1.39
TRIM28-202ENST00000341753 PIAS1O75925 651 aa23.74■■□□□ 1.39
TRIM28-202ENST00000341753 LUC7L3O95232 432 aaKnown RBP23.74■■□□□ 1.39
TRIM28-202ENST00000341753 ZSCAN5DPP0CG00 497 aa23.74■■□□□ 1.39
TRIM28-202ENST00000341753 KRT15P19012 456 aa23.74■■□□□ 1.39
TRIM28-202ENST00000341753 DLGAP5Q15398 846 aa23.74■■□□□ 1.39
TRIM28-202ENST00000341753 CEP55Q53EZ4 464 aa23.74■■□□□ 1.39
TRIM28-202ENST00000341753 HELQQ8TDG4 1101 aa23.74■■□□□ 1.39
TRIM28-202ENST00000341753 DDX1Q92499 740 aaKnown RBP23.74■■□□□ 1.39
TRIM28-202ENST00000341753 EURLQ9NYK6 297 aa23.74■■□□□ 1.39
TRIM28-202ENST00000341753 USTQ9Y2C2 406 aa23.74■■□□□ 1.39
TRIM28-202ENST00000341753 MAPK13O15264 365 aa23.74■■□□□ 1.39
TRIM28-202ENST00000341753 CD58P19256 250 aa23.74■■□□□ 1.39
TRIM28-202ENST00000341753 STAT4Q14765 748 aa23.74■■□□□ 1.39
TRIM28-202ENST00000341753 DDX27Q96GQ7 796 aaKnown RBP23.74■■□□□ 1.39
TRIM28-202ENST00000341753 TRABDQ9H4I3 376 aa23.74■■□□□ 1.39
TRIM28-202ENST00000341753 KIAA1586Q9HCI6 787 aa23.74■■□□□ 1.39
TRIM28-202ENST00000341753 LARSQ9P2J5 1176 aaKnown RBP23.74■■□□□ 1.39
TRIM28-202ENST00000341753 STARD13Q9Y3M8 1113 aa23.74■■□□□ 1.39
TRIM28-202ENST00000341753 ATP4AP20648 1035 aa23.73■■□□□ 1.39
TRIM28-202ENST00000341753 CTCFP49711 727 aaPredicted RBP23.73■■□□□ 1.39
TRIM28-202ENST00000341753 YARSP54577 528 aaKnown RBP23.73■■□□□ 1.39
TRIM28-202ENST00000341753 MOGSQ13724 837 aa23.73■■□□□ 1.39
TRIM28-202ENST00000341753 SLC1A5Q15758 541 aa23.73■■□□□ 1.39
TRIM28-202ENST00000341753 TRABD2AQ86V40 505 aa23.73■■□□□ 1.39
TRIM28-202ENST00000341753 AGGF1Q8N302 714 aaeCLIP23.73■■□□□ 1.39
TRIM28-202ENST00000341753 LARGE2Q8N3Y3 721 aa23.73■■□□□ 1.39
TRIM28-202ENST00000341753 KIFC3Q9BVG8 833 aa23.73■■□□□ 1.39
TRIM28-202ENST00000341753 SPATS2LQ9NUQ6 558 aaKnown RBP23.73■■□□□ 1.39
TRIM28-202ENST00000341753 P4HA2O15460 535 aa23.73■■□□□ 1.39
TRIM28-202ENST00000341753 FGFR1P11362 822 aa23.73■■□□□ 1.39
TRIM28-202ENST00000341753 PARP6Q2NL67 630 aa23.73■■□□□ 1.39
TRIM28-202ENST00000341753 TAF1BQ53T94 588 aaPredicted RBP23.73■■□□□ 1.39
TRIM28-202ENST00000341753 RSBN1LQ6PCB5 846 aaPredicted RBP23.73■■□□□ 1.39
TRIM28-202ENST00000341753 TMEM206Q9H813 350 aa23.73■■□□□ 1.39
TRIM28-202ENST00000341753 CNTNAP1P78357 1384 aa23.72■■□□□ 1.39
TRIM28-202ENST00000341753 WDR91A4D1P6 747 aa23.72■■□□□ 1.39
TRIM28-202ENST00000341753 SPDYE5A6NIY4 337 aa23.72■■□□□ 1.39
TRIM28-202ENST00000341753 IPO5O00410 1097 aaKnown RBP23.72■■□□□ 1.39
TRIM28-202ENST00000341753 CAV1Q03135 178 aa23.72■■□□□ 1.39
TRIM28-202ENST00000341753 CLEC16AQ2KHT3 1053 aa23.72■■□□□ 1.39
TRIM28-202ENST00000341753 HAUS6Q7Z4H7 955 aa23.72■■□□□ 1.39
TRIM28-202ENST00000341753 DENND2DQ9H6A0 471 aaPredicted RBP23.72■■□□□ 1.39
TRIM28-202ENST00000341753 TMX2Q9Y320 296 aa23.72■■□□□ 1.39
TRIM28-202ENST00000341753 NEU2Q9Y3R4 380 aa23.72■■□□□ 1.39
TRIM28-202ENST00000341753 NUMBLQ9Y6R0 609 aa23.72■■□□□ 1.39
TRIM28-202ENST00000341753 ETS1P14921 441 aa23.72■■□□□ 1.39
TRIM28-202ENST00000341753 PEX3P56589 373 aa23.72■■□□□ 1.39
TRIM28-202ENST00000341753 PCNX4Q63HM2 1172 aa23.72■■□□□ 1.39
TRIM28-202ENST00000341753 SYDE1Q6ZW31 735 aaPredicted RBP23.72■■□□□ 1.39
TRIM28-202ENST00000341753 VTI1AQ96AJ9 217 aa23.72■■□□□ 1.39
TRIM28-202ENST00000341753 TEKT3Q9BXF9 490 aa23.72■■□□□ 1.39
TRIM28-202ENST00000341753 FHDC1Q9C0D6 1143 aaPredicted RBP23.72■■□□□ 1.39
TRIM28-202ENST00000341753 A0A1W2PPM1 405 aa23.71■■□□□ 1.39
TRIM28-202ENST00000341753 PIK3CDO00329 1044 aa23.71■■□□□ 1.39
TRIM28-202ENST00000341753 POLR2MP0CAP2 368 aa23.71■■□□□ 1.39
TRIM28-202ENST00000341753 CA4P22748 312 aa23.71■■□□□ 1.39
TRIM28-202ENST00000341753 PTDSS1P48651 473 aaKnown RBP23.71■■□□□ 1.39
TRIM28-202ENST00000341753 TAS2R40P59535 323 aa23.71■■□□□ 1.39
TRIM28-202ENST00000341753 SPARCL1Q14515 664 aa23.71■■□□□ 1.39
TRIM28-202ENST00000341753 KAZNQ674X7 775 aa23.71■■□□□ 1.39
TRIM28-202ENST00000341753 RFWD3Q6PCD5 774 aa23.71■■□□□ 1.39
TRIM28-202ENST00000341753 LRRC8CQ8TDW0 803 aa23.71■■□□□ 1.39
TRIM28-202ENST00000341753 LRRC42Q9Y546 428 aa23.71■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms