RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 DDX60LQ5H9U9 1706 aaKnown RBP3.73□□□□□ -1.81
SYNE1-201ENST00000341594 C10orf71Q711Q0 1435 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 PHEXP78562 749 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 NLRP14Q86W24 1093 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 FREM3P0C091 2139 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 H3BSH0 61 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 RNASEH2AO75792 299 aaKnown RBP3.73□□□□□ -1.81
SYNE1-201ENST00000341594 CPNE8Q86YQ8 564 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 HVCN1Q96D96 273 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 C8orf48Q96LL4 319 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 TMED5Q9Y3A6 229 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 ZHX2Q9Y6X8 837 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 DNAJB5O75953 348 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 NTRK1P04629 796 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 DDX5P17844 614 aaKnown RBP3.73□□□□□ -1.81
SYNE1-201ENST00000341594 PLEKHO1Q53GL0 409 aaPredicted RBP3.73□□□□□ -1.81
SYNE1-201ENST00000341594 ATP11BQ9Y2G3 1177 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 CAMTA1Q9Y6Y1 1673 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 TRIM49BA6NDI0 452 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 TCP11X1B4DZS4 312 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 MAGEB3O15480 346 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 WEE2P0C1S8 567 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 BORAQ6PGQ7 559 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 A0A1W2PQJ5 194 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 NPTXRO95502 500 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 ITGADQ13349 1161 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 DPCR1Q3MIW9 517 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 ZBTB33Q86T24 672 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 SPATA20Q8TB22 786 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 CEP19Q96LK0 163 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 MMS19Q96T76 1030 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 COPG1Q9Y678 874 aaKnown RBP3.73□□□□□ -1.81
SYNE1-201ENST00000341594 SCNN1DP51172 638 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 FAM124AQ86V42 546 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 VSTM4Q8IW00 320 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 COA7Q96BR5 231 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 DNMT3AQ9Y6K1 912 aaPredicted RBP3.73□□□□□ -1.81
SYNE1-201ENST00000341594 FSCN2O14926 492 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 COL6A1P12109 1028 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 AKR1B1P15121 316 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 GRK3P35626 688 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 RCN1Q15293 331 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 FAM81AQ8TBF8 368 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 RNPC3Q96LT9 517 aaKnown RBP3.73□□□□□ -1.81
SYNE1-201ENST00000341594 CYP2S1Q96SQ9 504 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 LIN28AQ9H9Z2 209 aaKnown RBP3.73□□□□□ -1.81
SYNE1-201ENST00000341594 TUFT1Q9NNX1 390 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 PLXNB1O43157 2135 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 STMND1H3BQB6 276 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 LRPAP1P30533 357 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 FMR1Q06787 632 aaKnown RBP eCLIP3.73□□□□□ -1.81
SYNE1-201ENST00000341594 RWDD4Q6NW29 188 aaKnown RBP3.73□□□□□ -1.81
SYNE1-201ENST00000341594 ITM2BQ9Y287 266 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 PLXNA4Q9HCM2 1894 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 CFAP69A5D8W1 941 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 BDNFP23560 247 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 E4F1Q66K89 784 aaPredicted RBP3.73□□□□□ -1.81
SYNE1-201ENST00000341594 CNNM4Q6P4Q7 775 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 TNIP2Q8NFZ5 429 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 APOL6Q9BWW8 343 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 UBR3Q6ZT12 1888 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 MCF2LO15068 1137 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 NR5A1Q13285 461 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 TCP11X2Q5H9J9 407 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 C1orf141Q5JVX7 400 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 CCT8L2Q96SF2 557 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 VCPKMTQ9H867 229 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 MATN2O00339 956 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 C4orf22Q6V702 233 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 CTAGE3PQ8IX95 158 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 MTFMTQ96DP5 389 aaKnown RBP3.73□□□□□ -1.81
SYNE1-201ENST00000341594 HIC2Q96JB3 615 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 SLC4A9Q96Q91 983 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 EBF2Q9HAK2 575 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 SLC38A10Q9HBR0 1119 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 SLC40A1Q9NP59 571 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 TOM1L1O75674 476 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 TMTC3Q6ZXV5 915 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 TRMT10CQ7L0Y3 403 aaKnown RBP3.73□□□□□ -1.81
SYNE1-201ENST00000341594 TRIML2Q8N7C3 387 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 CCDC42Q96M95 316 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 PRKAG2Q9UGJ0 569 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 EXOC7Q9UPT5 735 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 HELZP42694 1942 aaKnown RBP3.73□□□□□ -1.81
SYNE1-201ENST00000341594 MIF4GDA9UHW6 222 aaKnown RBP3.73□□□□□ -1.81
SYNE1-201ENST00000341594 SLC22A1O15245 554 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 ATF3P18847 181 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 SEZ6Q53EL9 994 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 LGSNQ5TDP6 509 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 DHX40Q8IX18 779 aaKnown RBP3.73□□□□□ -1.81
SYNE1-201ENST00000341594 MIER2Q8N344 545 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 CCDC127Q96BQ5 260 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 RSL24D1Q9UHA3 163 aaKnown RBP3.73□□□□□ -1.81
SYNE1-201ENST00000341594 PJA2O43164 708 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 MX2P20592 715 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 BAG6P46379 1132 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 ESRRGP62508 458 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 ZNF589Q86UQ0 364 aaPredicted RBP3.73□□□□□ -1.81
SYNE1-201ENST00000341594 ZBED2Q9BTP6 218 aa3.73□□□□□ -1.81
SYNE1-201ENST00000341594 UBE2OQ9C0C9 1292 aaKnown RBP3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms