RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 DNERQ8NFT8 737 aa11.03□□□□□ -0.64
LIMA1-201ENST00000341247 SELENOSQ9BQE4 189 aa11.03□□□□□ -0.64
LIMA1-201ENST00000341247 INO80BQ9C086 356 aaPredicted RBP11.03□□□□□ -0.64
LIMA1-201ENST00000341247 ASCC2Q9H1I8 757 aaPredicted RBP11.03□□□□□ -0.64
LIMA1-201ENST00000341247 NXF1Q9UBU9 619 aaKnown RBP11.03□□□□□ -0.64
LIMA1-201ENST00000341247 FAM187AA6NFU0 413 aa11.02□□□□□ -0.64
LIMA1-201ENST00000341247 B4GALT5O43286 388 aa11.02□□□□□ -0.64
LIMA1-201ENST00000341247 ACSL3O95573 720 aa11.02□□□□□ -0.64
LIMA1-201ENST00000341247 CTNNA2P26232 953 aa11.02□□□□□ -0.64
LIMA1-201ENST00000341247 RPL7AP62424 266 aaKnown RBP11.02□□□□□ -0.64
LIMA1-201ENST00000341247 KRT17Q04695 432 aa11.02□□□□□ -0.64
LIMA1-201ENST00000341247 MKRN3Q13064 507 aaKnown RBP11.02□□□□□ -0.64
LIMA1-201ENST00000341247 DENND2CQ68D51 928 aa11.02□□□□□ -0.64
LIMA1-201ENST00000341247 SEPT1Q8WYJ6 367 aa11.02□□□□□ -0.64
LIMA1-201ENST00000341247 SEC14L1Q92503 715 aa11.02□□□□□ -0.64
LIMA1-201ENST00000341247 PDGFCQ9NRA1 345 aa11.02□□□□□ -0.64
LIMA1-201ENST00000341247 BHMG1C9JSJ3 638 aaPredicted RBP11.02□□□□□ -0.65
LIMA1-201ENST00000341247 STAM2O75886 525 aa11.02□□□□□ -0.65
LIMA1-201ENST00000341247 ECEL1O95672 775 aa11.02□□□□□ -0.65
LIMA1-201ENST00000341247 CLTAP09496 248 aa11.02□□□□□ -0.65
LIMA1-201ENST00000341247 RALAP11233 206 aa11.02□□□□□ -0.65
LIMA1-201ENST00000341247 ACO1P21399 889 aaKnown RBP11.02□□□□□ -0.65
LIMA1-201ENST00000341247 CLCN3P51790 818 aa11.02□□□□□ -0.65
LIMA1-201ENST00000341247 SIX1Q15475 284 aaPredicted RBP11.02□□□□□ -0.65
LIMA1-201ENST00000341247 LRIG3Q6UXM1 1119 aa11.02□□□□□ -0.65
LIMA1-201ENST00000341247 RUFY4Q6ZNE9 571 aa11.02□□□□□ -0.65
LIMA1-201ENST00000341247 DPH6Q7L8W6 267 aa11.02□□□□□ -0.65
LIMA1-201ENST00000341247 EPS8L3Q8TE67 593 aaKnown RBP11.02□□□□□ -0.65
LIMA1-201ENST00000341247 IMPG2Q9BZV3 1241 aa11.02□□□□□ -0.65
LIMA1-201ENST00000341247 KIAA1586Q9HCI6 787 aa11.02□□□□□ -0.65
LIMA1-201ENST00000341247 FOXO6A8MYZ6 492 aa11.02□□□□□ -0.65
LIMA1-201ENST00000341247 TLR3O15455 904 aaKnown RBP11.02□□□□□ -0.65
LIMA1-201ENST00000341247 ADCY3O60266 1144 aa11.02□□□□□ -0.65
LIMA1-201ENST00000341247 ATG7O95352 703 aa11.02□□□□□ -0.65
LIMA1-201ENST00000341247 FAM182AQ5T1J6 154 aa11.02□□□□□ -0.65
LIMA1-201ENST00000341247 FAM160B1Q5W0V3 765 aa11.02□□□□□ -0.65
LIMA1-201ENST00000341247 SLFN12LQ6IEE8 588 aa11.02□□□□□ -0.65
LIMA1-201ENST00000341247 ENOSF1Q7L5Y1 443 aa11.02□□□□□ -0.65
LIMA1-201ENST00000341247 C1orf131Q8NDD1 294 aaKnown RBP11.02□□□□□ -0.65
LIMA1-201ENST00000341247 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.02□□□□□ -0.652e-6■■■■■ 29
LIMA1-201ENST00000341247 HAUS1Q96CS2 278 aa11.02□□□□□ -0.65
LIMA1-201ENST00000341247 DDX23Q9BUQ8 820 aaKnown RBP11.02□□□□□ -0.65
LIMA1-201ENST00000341247 PPFIA2O75334 1257 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 MTA2O94776 668 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 KRT10P13645 584 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 PSMC4P43686 418 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 RAP1GAPP47736 663 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 LAMTOR4Q0VGL1 99 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 ANKS1BQ7Z6G8 1248 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 RIOX2Q8IUF8 465 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 PPP1R13LQ8WUF5 828 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 SPATA33Q96N06 139 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 CGRRF1Q99675 332 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 EPB41L4BQ9H329 900 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 RNF181Q9P0P0 153 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 MTRF1LQ9UGC7 380 aaKnown RBP11.01□□□□□ -0.65
LIMA1-201ENST00000341247 FAM169AQ9Y6X4 670 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 CNTNAP2Q9UHC6 1331 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 DICER1Q9UPY3 1922 aaKnown RBP11.01□□□□□ -0.65
LIMA1-201ENST00000341247 PRKCBP05771 671 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 ATF7P17544 494 aaPredicted RBP11.01□□□□□ -0.65
LIMA1-201ENST00000341247 ICAM3P32942 547 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 LIG3P49916 1009 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 IFI35P80217 286 aaPredicted RBP11.01□□□□□ -0.65
LIMA1-201ENST00000341247 CALCOCO2Q13137 446 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 NEDD9Q14511 834 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 PPP2R5EQ16537 467 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 PTGISQ16647 500 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 CYP4A22Q5TCH4 519 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 TMEM192Q8IY95 271 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 PCYOX1Q9UHG3 505 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 FEZ2Q9UHY8 353 aaPredicted RBP11.01□□□□□ -0.65
LIMA1-201ENST00000341247 PASKQ96RG2 1323 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 CD19P15391 556 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 YBX3P16989 372 aaKnown RBP eCLIP11.01□□□□□ -0.65
LIMA1-201ENST00000341247 NOMO3P69849 1222 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 TRPC3Q13507 836 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 NOL9Q5SY16 702 aaKnown RBP11.01□□□□□ -0.65
LIMA1-201ENST00000341247 LIN9Q5TKA1 542 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 MON1BQ7L1V2 547 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 ABRAQ8N0Z2 381 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 EIF1ADQ8N9N8 165 aaKnown RBP11.01□□□□□ -0.65
LIMA1-201ENST00000341247 ZNF606Q8WXB4 792 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 FGD4Q96M96 766 aa11.01□□□□□ -0.65
LIMA1-201ENST00000341247 ZC3H11AO75152 810 aaKnown RBP eCLIP11□□□□□ -0.65
LIMA1-201ENST00000341247 HSPA6P17066 643 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 CHKAP35790 457 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 BPIFB4P59827 614 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 PPP2R2AP63151 447 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 ADCY1Q08828 1119 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 MAMLD1Q13495 774 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 SH3D19Q5HYK7 790 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 HP1BP3Q5SSJ5 553 aaPredicted RBP11□□□□□ -0.65
LIMA1-201ENST00000341247 EEF1DP3Q658K8 133 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 METTL7BQ6UX53 244 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 DHX37Q8IY37 1157 aaKnown RBP11□□□□□ -0.65
LIMA1-201ENST00000341247 TAB3Q8N5C8 712 aaPredicted RBP11□□□□□ -0.65
LIMA1-201ENST00000341247 CCT8L2Q96SF2 557 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 NIFKQ9BYG3 293 aaKnown RBP11□□□□□ -0.65
LIMA1-201ENST00000341247 PABPC3Q9H361 631 aaKnown RBP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms