RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 DERAQ9Y315 318 aa17.18■□□□□ 0.34
CLN3-201ENST00000333496 TRIOO75962 3097 aa17.17■□□□□ 0.34
CLN3-201ENST00000333496 TSC2P49815 1807 aa17.17■□□□□ 0.34
CLN3-201ENST00000333496 PPEF2O14830 753 aa17.17■□□□□ 0.34
CLN3-201ENST00000333496 XPOTO43592 962 aaKnown RBP17.17■□□□□ 0.34
CLN3-201ENST00000333496 LDHAP00338 332 aaKnown RBP17.17■□□□□ 0.34
CLN3-201ENST00000333496 WEE2P0C1S8 567 aa17.17■□□□□ 0.34
CLN3-201ENST00000333496 CREMQ03060 361 aa17.17■□□□□ 0.34
CLN3-201ENST00000333496 ITIH3Q06033 890 aa17.17■□□□□ 0.34
CLN3-201ENST00000333496 STK4Q13043 487 aa17.17■□□□□ 0.34
CLN3-201ENST00000333496 KMT5BQ4FZB7 885 aa17.17■□□□□ 0.34
CLN3-201ENST00000333496 ARMCX5Q6P1M9 558 aa17.17■□□□□ 0.34
CLN3-201ENST00000333496 KRBA2Q6ZNG9 492 aa17.17■□□□□ 0.34
CLN3-201ENST00000333496 BRSK2Q8IWQ3 736 aa17.17■□□□□ 0.34
CLN3-201ENST00000333496 GJD3Q8N144 294 aa17.17■□□□□ 0.34
CLN3-201ENST00000333496 KHSRPQ92945 711 aaKnown RBP eCLIP17.17■□□□□ 0.34
CLN3-201ENST00000333496 SUSD3Q96L08 255 aa17.17■□□□□ 0.34
CLN3-201ENST00000333496 CHMP5Q9NZZ3 219 aa17.17■□□□□ 0.34
CLN3-201ENST00000333496 MTRRQ9UBK8 725 aa17.17■□□□□ 0.34
CLN3-201ENST00000333496 C2CD2Q9Y426 696 aa17.17■□□□□ 0.34
CLN3-201ENST00000333496 NUB1Q9Y5A7 615 aa17.17■□□□□ 0.34
CLN3-201ENST00000333496 MYO10Q9HD67 2058 aa17.16■□□□□ 0.34
CLN3-201ENST00000333496 UBE4BO95155 1302 aa17.16■□□□□ 0.34
CLN3-201ENST00000333496 C1RP00736 705 aa17.16■□□□□ 0.34
CLN3-201ENST00000333496 MYL1P05976 194 aa17.16■□□□□ 0.34
CLN3-201ENST00000333496 MCM4P33991 863 aa17.16■□□□□ 0.34
CLN3-201ENST00000333496 TMEM132DQ14C87 1099 aa17.16■□□□□ 0.34
CLN3-201ENST00000333496 BMT2Q1RMZ1 405 aa17.16■□□□□ 0.34
CLN3-201ENST00000333496 TMC5Q6UXY8 1006 aa17.16■□□□□ 0.34
CLN3-201ENST00000333496 NELFCDQ8IXH7 590 aa17.16■□□□□ 0.34
CLN3-201ENST00000333496 KIAA0895Q8NCT3 520 aa17.16■□□□□ 0.34
CLN3-201ENST00000333496 BEST2Q8NFU1 509 aa17.16■□□□□ 0.34
CLN3-201ENST00000333496 SFXN1Q9H9B4 322 aa17.16■□□□□ 0.34
CLN3-201ENST00000333496 CIZ1Q9ULV3 898 aaPredicted RBP17.16■□□□□ 0.34
CLN3-201ENST00000333496 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.16■□□□□ 0.34
CLN3-201ENST00000333496 ANO9A1A5B4 782 aa17.15■□□□□ 0.34
CLN3-201ENST00000333496 SYN3O14994 580 aa17.15■□□□□ 0.34
CLN3-201ENST00000333496 EXTL3O43909 919 aa17.15■□□□□ 0.34
CLN3-201ENST00000333496 IL18RAPO95256 599 aa17.15■□□□□ 0.34
CLN3-201ENST00000333496 AARSP49588 968 aaKnown RBP eCLIP17.15■□□□□ 0.34
CLN3-201ENST00000333496 MRPL58Q14197 206 aaKnown RBP17.15■□□□□ 0.34
CLN3-201ENST00000333496 VARS2Q5ST30 1063 aaKnown RBP17.15■□□□□ 0.34
CLN3-201ENST00000333496 CES5AQ6NT32 575 aa17.15■□□□□ 0.34
CLN3-201ENST00000333496 PDXDC1Q6P996 788 aa17.15■□□□□ 0.34
CLN3-201ENST00000333496 GPD1LQ8N335 351 aa17.15■□□□□ 0.34
CLN3-201ENST00000333496 PHF7Q9BWX1 381 aaPredicted RBP17.15■□□□□ 0.34
CLN3-201ENST00000333496 M0QZQ0 153 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 PIRO00625 290 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 TBC1D4O60343 1298 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 RFPL2O75678 378 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 OR1D2P34982 312 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 DPYDQ12882 1025 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 SNW1Q13573 536 aaKnown RBP17.14■□□□□ 0.33
CLN3-201ENST00000333496 C9orf57Q5W0N0 161 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 ANKS3Q6ZW76 656 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 FMR1NBQ8N0W7 255 aaPredicted RBP17.14■□□□□ 0.33
CLN3-201ENST00000333496 ENGASEQ8NFI3 743 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 HDAC7Q8WUI4 952 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 POMKQ9H5K3 350 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 AGPAT3Q9NRZ7 376 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 EXOC1Q9NV70 894 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 DPP3Q9NY33 737 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 RBAKQ9NYW8 714 aaPredicted RBP17.14■□□□□ 0.33
CLN3-201ENST00000333496 HSPBP1Q9NZL4 362 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 FBXW11Q9UKB1 542 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 BACE2Q9Y5Z0 518 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 CDY1Q9Y6F8 540 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 LOC730098B7Z3J9 87 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 KIAA0391O15091 583 aaKnown RBP17.14■□□□□ 0.33
CLN3-201ENST00000333496 CLIC2O15247 247 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 SPTLC1O15269 473 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 PAPLNO95428 1278 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 RPN1P04843 607 aaKnown RBP17.14■□□□□ 0.33
CLN3-201ENST00000333496 SSTR3P32745 418 aaPredicted RBP17.14■□□□□ 0.33
CLN3-201ENST00000333496 LILRA4P59901 499 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 PSMD2Q13200 908 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 RAB33AQ14088 237 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 SCARA3Q6AZY7 606 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 GPR149Q86SP6 731 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 CBWD2Q8IUF1 395 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 KREMEN2Q8NCW0 462 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 NOC3LQ8WTT2 800 aaKnown RBP17.14■□□□□ 0.33
CLN3-201ENST00000333496 FAM84AQ96KN4 292 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 PLEKHA4Q9H4M7 779 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 PDE11AQ9HCR9 933 aa17.14■□□□□ 0.33
CLN3-201ENST00000333496 NOTCH4Q99466 2003 aa17.13■□□□□ 0.33
CLN3-201ENST00000333496 DOCK8Q8NF50 2099 aa17.13■□□□□ 0.33
CLN3-201ENST00000333496 CCDC195A0A1B0GUA6 201 aa17.13■□□□□ 0.33
CLN3-201ENST00000333496 SPDYE4A6NLX3 237 aa17.13■□□□□ 0.33
CLN3-201ENST00000333496 KNOP1Q1ED39 458 aaKnown RBP17.13■□□□□ 0.33
CLN3-201ENST00000333496 C15orf39Q6ZRI6 1047 aa17.13■□□□□ 0.33
CLN3-201ENST00000333496 NT5DC4Q86YG4 428 aa17.13■□□□□ 0.33
CLN3-201ENST00000333496 CMASQ8NFW8 434 aaPredicted RBP17.13■□□□□ 0.33
CLN3-201ENST00000333496 POP1Q99575 1024 aaKnown RBP17.13■□□□□ 0.33
CLN3-201ENST00000333496 PCDHB8Q9UN66 801 aa17.13■□□□□ 0.33
CLN3-201ENST00000333496 RHOBTB3O94955 611 aa17.12■□□□□ 0.33
CLN3-201ENST00000333496 MTHFRP42898 656 aa17.12■□□□□ 0.33
CLN3-201ENST00000333496 SNRPFP62306 86 aaKnown RBP17.12■□□□□ 0.33
CLN3-201ENST00000333496 ATAT1Q5SQI0 421 aa17.12■□□□□ 0.33
CLN3-201ENST00000333496 SLC8B1Q6J4K2 584 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms