RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 TTPALQ9BTX7 342 aa17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 CHST7Q9NS84 486 aa17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 INTS13Q9NVM9 706 aa17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 CTNND2Q9UQB3 1225 aa17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 TNNC2P02585 160 aa17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 CCNE1P24864 410 aa17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 PMS1P54277 932 aaKnown RBP17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 DUSP6Q16828 381 aa17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 RTP2Q5QGT7 225 aa17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 KIAA0319Q5VV43 1072 aa17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 EP400NLQ6ZTU2 488 aa17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 C1orf127Q8N9H9 656 aa17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 OR5B17Q8NGF7 314 aa17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 NELFBQ8WX92 580 aa17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 EEF2KMTQ96G04 330 aa17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 POP1Q99575 1024 aaKnown RBP17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 SSX2IPQ9Y2D8 614 aa17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 IRAK3Q9Y616 596 aa17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 MYO7AQ13402 2215 aa17.17■□□□□ 0.34
CCDC28A-201ENST00000332797 ANO9A1A5B4 782 aa17.17■□□□□ 0.34
CCDC28A-201ENST00000332797 PIRO00625 290 aa17.17■□□□□ 0.34
CCDC28A-201ENST00000332797 CETN3O15182 167 aa17.17■□□□□ 0.34
CCDC28A-201ENST00000332797 AKAP3O75969 853 aa17.17■□□□□ 0.34
CCDC28A-201ENST00000332797 ITGB3P05106 788 aa17.17■□□□□ 0.34
CCDC28A-201ENST00000332797 FGFR3P22607 806 aa17.17■□□□□ 0.34
CCDC28A-201ENST00000332797 TKTP29401 623 aaKnown RBP17.17■□□□□ 0.34
CCDC28A-201ENST00000332797 POLR2BP30876 1174 aaKnown RBP17.17■□□□□ 0.34
CCDC28A-201ENST00000332797 LRRC63Q05C16 580 aa17.17■□□□□ 0.34
CCDC28A-201ENST00000332797 DUOXA2Q1HG44 320 aa17.17■□□□□ 0.34
CCDC28A-201ENST00000332797 PRSS55Q6UWB4 352 aaPredicted RBP17.17■□□□□ 0.34
CCDC28A-201ENST00000332797 FAM186BQ8IYM0 893 aa17.17■□□□□ 0.34
CCDC28A-201ENST00000332797 CSGALNACT2Q8N6G5 542 aa17.17■□□□□ 0.34
CCDC28A-201ENST00000332797 PLEKHO2Q8TD55 490 aa17.17■□□□□ 0.34
CCDC28A-201ENST00000332797 SUSD3Q96L08 255 aa17.17■□□□□ 0.34
CCDC28A-201ENST00000332797 CDCA3Q99618 268 aaPredicted RBP17.17■□□□□ 0.34
CCDC28A-201ENST00000332797 EMILIN2Q9BXX0 1053 aa17.17■□□□□ 0.34
CCDC28A-201ENST00000332797 GZF1Q9H116 711 aaPredicted RBP17.17■□□□□ 0.34
CCDC28A-201ENST00000332797 PRDM6Q9NQX0 595 aa17.17■□□□□ 0.34
CCDC28A-201ENST00000332797 CLDND1Q9NY35 253 aa17.17■□□□□ 0.34
CCDC28A-201ENST00000332797 ITGA11Q9UKX5 1188 aa17.17■□□□□ 0.34
CCDC28A-201ENST00000332797 AGAP1Q9UPQ3 857 aa17.17■□□□□ 0.34
CCDC28A-201ENST00000332797 LRRIQ3A6PVS8 624 aaPredicted RBP17.16■□□□□ 0.34
CCDC28A-201ENST00000332797 LINC01565O15544 149 aa17.16■□□□□ 0.34
CCDC28A-201ENST00000332797 LILRB3O75022 631 aa17.16■□□□□ 0.34
CCDC28A-201ENST00000332797 SLC34A2O95436 690 aa17.16■□□□□ 0.34
CCDC28A-201ENST00000332797 KRT19P08727 400 aa17.16■□□□□ 0.34
CCDC28A-201ENST00000332797 PSMC2P35998 433 aaKnown RBP17.16■□□□□ 0.34
CCDC28A-201ENST00000332797 PSMD5Q16401 504 aa17.16■□□□□ 0.34
CCDC28A-201ENST00000332797 LLGL2Q6P1M3 1020 aa17.16■□□□□ 0.34
CCDC28A-201ENST00000332797 DSTYKQ6XUX3 929 aa17.16■□□□□ 0.34
CCDC28A-201ENST00000332797 PARD3BQ8TEW8 1205 aa17.16■□□□□ 0.34
CCDC28A-201ENST00000332797 ZNF560Q96MR9 790 aa17.16■□□□□ 0.34
CCDC28A-201ENST00000332797 VWA8A3KMH1 1905 aa17.15■□□□□ 0.34
CCDC28A-201ENST00000332797 BICDL2A1A5D9 508 aa17.15■□□□□ 0.34
CCDC28A-201ENST00000332797 MAPK13O15264 365 aa17.15■□□□□ 0.34
CCDC28A-201ENST00000332797 SPTLC1O15269 473 aa17.15■□□□□ 0.34
CCDC28A-201ENST00000332797 CLASP2O75122 1294 aaKnown RBP17.15■□□□□ 0.34
CCDC28A-201ENST00000332797 CNPP09543 421 aaKnown RBP17.15■□□□□ 0.34
CCDC28A-201ENST00000332797 EPB41P11171 864 aaKnown RBP17.15■□□□□ 0.34
CCDC28A-201ENST00000332797 RPL17P18621 184 aaKnown RBP17.15■□□□□ 0.34
CCDC28A-201ENST00000332797 TAF6P49848 677 aa17.15■□□□□ 0.34
CCDC28A-201ENST00000332797 STX17P56962 302 aa17.15■□□□□ 0.34
CCDC28A-201ENST00000332797 LILRA4P59901 499 aa17.15■□□□□ 0.34
CCDC28A-201ENST00000332797 FKBP3Q00688 224 aaKnown RBP17.15■□□□□ 0.34
CCDC28A-201ENST00000332797 PAK1Q13153 545 aa17.15■□□□□ 0.34
CCDC28A-201ENST00000332797 PDXDC1Q6P996 788 aa17.15■□□□□ 0.34
CCDC28A-201ENST00000332797 GLYCTKQ8IVS8 523 aa17.15■□□□□ 0.34
CCDC28A-201ENST00000332797 EFHBQ8N7U6 833 aa17.15■□□□□ 0.34
CCDC28A-201ENST00000332797 PIK3R5Q8WYR1 880 aa17.15■□□□□ 0.34
CCDC28A-201ENST00000332797 PABPC5Q96DU9 382 aaKnown RBP17.15■□□□□ 0.34
CCDC28A-201ENST00000332797 KLHL5Q96PQ7 755 aa17.15■□□□□ 0.34
CCDC28A-201ENST00000332797 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.15■□□□□ 0.34
CCDC28A-201ENST00000332797 SIX4Q9UIU6 781 aa17.15■□□□□ 0.34
CCDC28A-201ENST00000332797 R3HCC1Q9Y3T6 440 aaKnown RBP17.15■□□□□ 0.34
CCDC28A-201ENST00000332797 FSD2A1L4K1 749 aa17.14■□□□□ 0.33
CCDC28A-201ENST00000332797 SYN3O14994 580 aa17.14■□□□□ 0.33
CCDC28A-201ENST00000332797 TEX28O15482 410 aa17.14■□□□□ 0.33
CCDC28A-201ENST00000332797 NCK2O43639 380 aa17.14■□□□□ 0.33
CCDC28A-201ENST00000332797 KRT13P13646 458 aa17.14■□□□□ 0.33
CCDC28A-201ENST00000332797 KLRC2P26717 231 aa17.14■□□□□ 0.33
CCDC28A-201ENST00000332797 PNPLA4P41247 253 aa17.14■□□□□ 0.33
CCDC28A-201ENST00000332797 AARSP49588 968 aaKnown RBP eCLIP17.14■□□□□ 0.33
CCDC28A-201ENST00000332797 DLG4P78352 724 aa17.14■□□□□ 0.33
CCDC28A-201ENST00000332797 RBP5P82980 135 aa17.14■□□□□ 0.33
CCDC28A-201ENST00000332797 RBM10P98175 930 aaKnown RBP17.14■□□□□ 0.33
CCDC28A-201ENST00000332797 CREMQ03060 361 aa17.14■□□□□ 0.33
CCDC28A-201ENST00000332797 SV2CQ496J9 727 aa17.14■□□□□ 0.33
CCDC28A-201ENST00000332797 CCDC183Q5T5S1 534 aa17.14■□□□□ 0.33
CCDC28A-201ENST00000332797 SCARA3Q6AZY7 606 aa17.14■□□□□ 0.33
CCDC28A-201ENST00000332797 INTS8Q75QN2 995 aaKnown RBP17.14■□□□□ 0.33
CCDC28A-201ENST00000332797 TRAPPC11Q7Z392 1133 aa17.14■□□□□ 0.33
CCDC28A-201ENST00000332797 ZC3H3Q8IXZ2 948 aaKnown RBP17.14■□□□□ 0.33
CCDC28A-201ENST00000332797 GPR65Q8IYL9 337 aa17.14■□□□□ 0.33
CCDC28A-201ENST00000332797 LNX1Q8TBB1 728 aaPredicted RBP17.14■□□□□ 0.33
CCDC28A-201ENST00000332797 TMC2Q8TDI7 906 aa17.14■□□□□ 0.33
CCDC28A-201ENST00000332797 ZNF516Q92618 1163 aa17.14■□□□□ 0.33
CCDC28A-201ENST00000332797 HLA-CQ95604 372 aa17.14■□□□□ 0.33
CCDC28A-201ENST00000332797 MKNK1Q9BUB5 465 aa17.14■□□□□ 0.33
CCDC28A-201ENST00000332797 UBE2ZQ9H832 354 aaPredicted RBP17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms