RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 OSBPL8Q9BZF1 889 aa11.17□□□□□ -0.62
COL3A1-202ENST00000317840 ELP3Q9H9T3 547 aa11.17□□□□□ -0.62
COL3A1-202ENST00000317840 TBX20Q9UMR3 447 aa11.17□□□□□ -0.62
COL3A1-202ENST00000317840 IKBKGQ9Y6K9 419 aa11.17□□□□□ -0.62
COL3A1-202ENST00000317840 DDX60LQ5H9U9 1706 aaKnown RBP11.17□□□□□ -0.62
COL3A1-202ENST00000317840 KRT10P13645 584 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 CHRNB2P17787 502 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 ACOT2P49753 483 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 SESN3P58005 492 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 PIGWQ7Z7B1 504 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 NLGN2Q8NFZ4 835 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 PARD3BQ8TEW8 1205 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 AGAP11Q8TF27 550 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 CFAP57Q96MR6 1250 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 LRRC37BQ96QE4 947 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 LBHD1Q9BQE6 289 aaPredicted RBP11.16□□□□□ -0.62
COL3A1-202ENST00000317840 FAM167BQ9BTA0 163 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 A1CFQ9NQ94 594 aaKnown RBP11.16□□□□□ -0.62
COL3A1-202ENST00000317840 AGAP1Q9UPQ3 857 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 LRRD1A4D1F6 860 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 LRRIQ4A6NIV6 560 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 KRT1P04264 644 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 ZBTB48P10074 688 aaPredicted RBP11.16□□□□□ -0.62
COL3A1-202ENST00000317840 BPIFB4P59827 614 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 PSMC5P62195 406 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 GPS1Q13098 491 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 RPAINQ86UA6 219 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 RHOT1Q8IXI2 618 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 LMO3Q8TAP4 145 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 SHC3Q92529 594 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 ACSF2Q96CM8 615 aaPredicted RBP11.16□□□□□ -0.62
COL3A1-202ENST00000317840 TXLNGYQ9BZA5 131 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 ADAM7Q9H2U9 754 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 SYNCQ9H7C4 482 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 SLC24A3Q9HC58 644 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 RREB1Q92766 1687 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 WDR64B1ANS9 1081 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 SKAP2O75563 359 aaPredicted RBP11.16□□□□□ -0.62
COL3A1-202ENST00000317840 MAGEA4P43358 317 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 NPTX2P47972 431 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 GSCP56915 257 aaPredicted RBP11.16□□□□□ -0.62
COL3A1-202ENST00000317840 MYBPC2Q14324 1141 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 NFIL3Q16649 462 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 ZBED8Q8IZ13 594 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 CCHCR1Q8TD31 782 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 FAM81BQ96LP2 452 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 MRPL47Q9HD33 250 aaKnown RBP11.16□□□□□ -0.62
COL3A1-202ENST00000317840 NINJ2Q9NZG7 142 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 GABBR1Q9UBS5 961 aa11.16□□□□□ -0.62
COL3A1-202ENST00000317840 FAM47DPA6NHR8 397 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 GJB6O95452 261 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 CAV1Q03135 178 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 SPARCL1Q14515 664 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 TKFCQ3LXA3 575 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 SPOPLQ6IQ16 392 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 PLEKHO2Q8TD55 490 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 RAB3IPQ96QF0 476 aaPredicted RBP11.15□□□□□ -0.62
COL3A1-202ENST00000317840 LRRC19Q9H756 370 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 TBC1D22BQ9NU19 505 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 MCM8Q9UJA3 840 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 DCTN4Q9UJW0 460 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 NOCTQ9UK39 431 aaKnown RBP11.15□□□□□ -0.62
COL3A1-202ENST00000317840 R3HDM2Q9Y2K5 976 aaKnown RBP11.15□□□□□ -0.62
COL3A1-202ENST00000317840 BTAF1O14981 1849 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 MGRN1O60291 552 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 GCKP35557 465 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 MSH2P43246 934 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 ARSEP51690 589 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 SWSAP1Q6NVH7 229 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 TRIM11Q96F44 468 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 NEU2Q9Y3R4 380 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 A8MUI8 341 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 CYP1A2P05177 515 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 NCALDP61601 193 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 STAT4Q14765 748 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 TAF11Q15544 211 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 FYB2Q5VWT5 728 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 FAM228AQ86W67 206 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 GPD1LQ8N335 351 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 ZNF280CQ8ND82 737 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 SYT11Q9BT88 431 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 DCLK3Q9C098 648 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 TRABDQ9H4I3 376 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 ATP6V0A4Q9HBG4 840 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 TXLNGQ9NUQ3 528 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 PCDHB2Q9Y5E7 798 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 MYH11P35749 1972 aa11.15□□□□□ -0.62
COL3A1-202ENST00000317840 ATP8B3O60423 1300 aa11.14□□□□□ -0.63
COL3A1-202ENST00000317840 GOLGA8RI6L899 631 aa11.14□□□□□ -0.63
COL3A1-202ENST00000317840 CD19P15391 556 aa11.14□□□□□ -0.63
COL3A1-202ENST00000317840 MUTP22033 750 aa11.14□□□□□ -0.63
COL3A1-202ENST00000317840 TARSP26639 723 aaKnown RBP11.14□□□□□ -0.63
COL3A1-202ENST00000317840 GNA15P30679 374 aa11.14□□□□□ -0.63
COL3A1-202ENST00000317840 MMP14P50281 582 aa11.14□□□□□ -0.63
COL3A1-202ENST00000317840 ANKMY2Q8IV38 441 aa11.14□□□□□ -0.63
COL3A1-202ENST00000317840 SLC17A8Q8NDX2 589 aa11.14□□□□□ -0.63
COL3A1-202ENST00000317840 ALG13Q9NP73 1137 aaKnown RBP11.14□□□□□ -0.63
COL3A1-202ENST00000317840 PIAS1O75925 651 aa11.14□□□□□ -0.63
COL3A1-202ENST00000317840 KRT16P08779 473 aa11.14□□□□□ -0.63
COL3A1-202ENST00000317840 CLEC16AQ2KHT3 1053 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms