RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 ZNF862O60290 1169 aa5.07□□□□□ -1.6
CSMD3-201ENST00000297405 C5orf22Q49AR2 442 aa5.07□□□□□ -1.6
CSMD3-201ENST00000297405 FBXW10Q5XX13 1052 aa5.07□□□□□ -1.6
CSMD3-201ENST00000297405 DSTYKQ6XUX3 929 aa5.07□□□□□ -1.6
CSMD3-201ENST00000297405 FAM92BQ6ZTR7 304 aa5.07□□□□□ -1.6
CSMD3-201ENST00000297405 GPT2Q8TD30 523 aa5.07□□□□□ -1.6
CSMD3-201ENST00000297405 TCEAL3Q969E4 200 aa5.07□□□□□ -1.6
CSMD3-201ENST00000297405 EDC3Q96F86 508 aaKnown RBP5.07□□□□□ -1.6
CSMD3-201ENST00000297405 SH3BP4Q9P0V3 963 aa5.07□□□□□ -1.6
CSMD3-201ENST00000297405 GCNT4Q9P109 453 aa5.07□□□□□ -1.6
CSMD3-201ENST00000297405 PDGFRBP09619 1106 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 FAUP35544 74 aaKnown RBP5.06□□□□□ -1.6
CSMD3-201ENST00000297405 CASP4P49662 377 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 MYOM2P54296 1465 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 SCUBE1Q8IWY4 988 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 SPATA4Q8NEY3 305 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 OR7A2PQ8NGA2 310 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 APPBP2Q92624 585 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 CCNB1IP1Q9NPC3 277 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 GSTK1Q9Y2Q3 226 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 CACNA1HO95180 2353 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 EIF4G3O43432 1585 aaKnown RBP5.06□□□□□ -1.6
CSMD3-201ENST00000297405 REM1O75628 298 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 RFX4Q33E94 735 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 UTS2BQ765I0 119 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 RBM12BQ8IXT5 1001 aaKnown RBP5.06□□□□□ -1.6
CSMD3-201ENST00000297405 MYCBPAPQ8TBZ2 947 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 OSBPL6Q9BZF3 934 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 SERHL2Q9H4I8 314 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 SERHLQ9NQF3 203 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 CASP8AP2Q9UKL3 1982 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 UBE2QL1A1L167 161 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 TEX28O15482 410 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 ITIH2P19823 946 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 ALDH18A1P54886 795 aaKnown RBP5.06□□□□□ -1.6
CSMD3-201ENST00000297405 ITGADQ13349 1161 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 RSBN1Q5VWQ0 802 aaPredicted RBP5.06□□□□□ -1.6
CSMD3-201ENST00000297405 FBXO42Q6P3S6 717 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 COL23A1Q86Y22 540 aaPredicted RBP5.06□□□□□ -1.6
CSMD3-201ENST00000297405 FAM172AQ8WUF8 416 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 CYGBQ8WWM9 190 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 SPOCK3Q9BQ16 436 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 CHID1Q9BWS9 393 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 TET1Q8NFU7 2136 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 PDLIM1O00151 329 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 IFNA7P01567 189 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 OGNP20774 298 aaKnown RBP5.06□□□□□ -1.6
CSMD3-201ENST00000297405 ARL4AP40617 200 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 VSNL1P62760 191 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 OTUD4Q01804 1114 aaKnown RBP5.06□□□□□ -1.6
CSMD3-201ENST00000297405 MECOMQ03112 1051 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 TDRD5Q8NAT2 981 aaKnown RBP5.06□□□□□ -1.6
CSMD3-201ENST00000297405 RDH13Q8NBN7 331 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 C1orf131Q8NDD1 294 aaKnown RBP5.06□□□□□ -1.6
CSMD3-201ENST00000297405 TMCO6Q96DC7 493 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 Q96MT0 163 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 FOPNLQ96NB1 174 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 OSBPL3Q9H4L5 887 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 PCDHB15Q9Y5E8 787 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 A0A0X1KG70 313 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 SSU72P8A0A1W2PR75 194 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 ATP6V1C1P21283 382 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 FGFR2P21802 821 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 TBXAS1P24557 533 aaPredicted RBP5.06□□□□□ -1.6
CSMD3-201ENST00000297405 MARK2Q7KZI7 788 aaKnown RBP5.06□□□□□ -1.6
CSMD3-201ENST00000297405 TTC30AQ86WT1 665 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 FAM133AQ8N9E0 248 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 PCDHA13Q9Y5I0 950 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 hCG_2014768A0A024R1R8 64 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 KCNK1O00180 336 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 ACSL3O95573 720 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 CCDC130P13994 396 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 VCLP18206 1134 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 TAF12Q16514 161 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 CNDP1Q96KN2 507 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 CNOT6LQ96LI5 555 aaKnown RBP5.06□□□□□ -1.6
CSMD3-201ENST00000297405 USP1O94782 785 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 PRKAR1AP10644 381 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 GRK2P25098 689 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 ARHGDIBP52566 201 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 HDLBPQ00341 1268 aaKnown RBP5.06□□□□□ -1.6
CSMD3-201ENST00000297405 ZNF846Q147U1 533 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 LEMD2Q8NC56 503 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 PLEKHA8Q96JA3 519 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 TNIP3Q96KP6 325 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 DESI2Q9BSY9 194 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 COMMD9Q9P000 198 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 ANAPC7Q9UJX3 599 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 PLK4O00444 970 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 MAGEB3O15480 346 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 IFNA14P01570 189 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 NPEPPSP55786 919 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 ATP2B3Q16720 1220 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 ZFP69Q49AA0 526 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 CYFIP1Q7L576 1253 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 DNAAF3Q8N9W5 541 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 GLMNQ92990 594 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 FAM167BQ9BTA0 163 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 TBC1D7Q9P0N9 293 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 MTMR7Q9Y216 660 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms