RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 OSTNP61366 133 aa16.37■□□□□ 0.21
SF3B4-201ENST00000271628 PCBP1Q15365 356 aaKnown RBP eCLIP16.37■□□□□ 0.212e-6■■■■■ 34.9
SF3B4-201ENST00000271628 CEP120Q8N960 986 aa16.37■□□□□ 0.21
SF3B4-201ENST00000271628 ADPGKQ9BRR6 497 aa16.37■□□□□ 0.21
SF3B4-201ENST00000271628 PDZD7Q9H5P4 517 aa16.37■□□□□ 0.21
SF3B4-201ENST00000271628 SETD4Q9NVD3 440 aa16.37■□□□□ 0.21
SF3B4-201ENST00000271628 HPCAL4Q9UM19 191 aa16.37■□□□□ 0.21
SF3B4-201ENST00000271628 COG5Q9UP83 839 aa16.37■□□□□ 0.21
SF3B4-201ENST00000271628 TLL2Q9Y6L7 1015 aa16.37■□□□□ 0.21
SF3B4-201ENST00000271628 PASKQ96RG2 1323 aa16.37■□□□□ 0.21
SF3B4-201ENST00000271628 IVLP07476 585 aa16.36■□□□□ 0.21
SF3B4-201ENST00000271628 STAG3L1P0CL83 205 aa16.36■□□□□ 0.21
SF3B4-201ENST00000271628 MYBL1P10243 752 aa16.36■□□□□ 0.21
SF3B4-201ENST00000271628 GNA15P30679 374 aa16.36■□□□□ 0.21
SF3B4-201ENST00000271628 CLUL1Q15846 466 aa16.36■□□□□ 0.21
SF3B4-201ENST00000271628 CDR2LQ86X02 465 aaPredicted RBP16.36■□□□□ 0.21
SF3B4-201ENST00000271628 GOLGA6L1Q8N7Z2 621 aa16.36■□□□□ 0.21
SF3B4-201ENST00000271628 USP38Q8NB14 1042 aa16.36■□□□□ 0.21
SF3B4-201ENST00000271628 RPS6KC1Q96S38 1066 aa16.36■□□□□ 0.21
SF3B4-201ENST00000271628 AP5M1Q9H0R1 490 aa16.36■□□□□ 0.21
SF3B4-201ENST00000271628 RNF216Q9NWF9 866 aaPredicted RBP16.36■□□□□ 0.21
SF3B4-201ENST00000271628 GJD2Q9UKL4 321 aa16.36■□□□□ 0.21
SF3B4-201ENST00000271628 ALG6Q9Y672 507 aa16.36■□□□□ 0.21
SF3B4-201ENST00000271628 A0A1B0GUA9 196 aa16.36■□□□□ 0.21
SF3B4-201ENST00000271628 SMIM35A0A1B0GVV1 85 aa16.36■□□□□ 0.21
SF3B4-201ENST00000271628 MIF4GDA9UHW6 222 aaKnown RBP16.36■□□□□ 0.21
SF3B4-201ENST00000271628 TULP2O00295 520 aa16.36■□□□□ 0.21
SF3B4-201ENST00000271628 CEP104O60308 925 aa16.36■□□□□ 0.21
SF3B4-201ENST00000271628 ECM2O94769 699 aaPredicted RBP16.36■□□□□ 0.21
SF3B4-201ENST00000271628 SYF2O95926 243 aaKnown RBP16.36■□□□□ 0.21
SF3B4-201ENST00000271628 CXCL8P10145 99 aa16.36■□□□□ 0.21
SF3B4-201ENST00000271628 MYL6P60660 151 aa16.36■□□□□ 0.21
SF3B4-201ENST00000271628 YWHAEP62258 255 aaKnown RBP16.36■□□□□ 0.21
SF3B4-201ENST00000271628 APBB1IPQ7Z5R6 666 aaPredicted RBP16.36■□□□□ 0.21
SF3B4-201ENST00000271628 EFCAB13Q8IY85 973 aa16.36■□□□□ 0.21
SF3B4-201ENST00000271628 RASGEF1CQ8N431 466 aa16.36■□□□□ 0.21
SF3B4-201ENST00000271628 RBBP8NLQ8NC74 664 aaPredicted RBP16.36■□□□□ 0.21
SF3B4-201ENST00000271628 ZNF653Q96CK0 615 aa16.36■□□□□ 0.21
SF3B4-201ENST00000271628 PPP1R16BQ96T49 567 aa16.36■□□□□ 0.21
SF3B4-201ENST00000271628 NIF3L1Q9GZT8 377 aa16.36■□□□□ 0.21
SF3B4-201ENST00000271628 EHD2Q9NZN4 543 aa16.36■□□□□ 0.21
SF3B4-201ENST00000271628 PGRMC1O00264 195 aaKnown RBP16.35■□□□□ 0.21
SF3B4-201ENST00000271628 CSDE1O75534 798 aaKnown RBP16.35■□□□□ 0.21
SF3B4-201ENST00000271628 CYP1A1P04798 512 aaPredicted RBP16.35■□□□□ 0.21
SF3B4-201ENST00000271628 SMIM10L2AP0DMW4 78 aa16.35■□□□□ 0.21
SF3B4-201ENST00000271628 SMIM10L2BP0DMW5 78 aa16.35■□□□□ 0.21
SF3B4-201ENST00000271628 NSFP46459 744 aaKnown RBP16.35■□□□□ 0.21
SF3B4-201ENST00000271628 CENPCQ03188 943 aa16.35■□□□□ 0.21
SF3B4-201ENST00000271628 ZNF699Q32M78 642 aa16.35■□□□□ 0.21
SF3B4-201ENST00000271628 C8orf74Q6P047 294 aa16.35■□□□□ 0.21
SF3B4-201ENST00000271628 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.35■□□□□ 0.21
SF3B4-201ENST00000271628 LRRC1Q9BTT6 524 aa16.35■□□□□ 0.21
SF3B4-201ENST00000271628 KATNAL1Q9BW62 490 aa16.35■□□□□ 0.21
SF3B4-201ENST00000271628 GCOM2Q9BZD3 368 aaPredicted RBP16.35■□□□□ 0.21
SF3B4-201ENST00000271628 CARD9Q9H257 536 aa16.35■□□□□ 0.21
SF3B4-201ENST00000271628 RBM12Q9NTZ6 932 aaKnown RBP16.35■□□□□ 0.21
SF3B4-201ENST00000271628 TTC7AQ9ULT0 858 aaPredicted RBP16.35■□□□□ 0.21
SF3B4-201ENST00000271628 ANK1P16157 1881 aa16.35■□□□□ 0.21
SF3B4-201ENST00000271628 A0A0U1RQG5 324 aaPredicted RBP16.34■□□□□ 0.21
SF3B4-201ENST00000271628 MBLAC1A4D2B0 266 aaPredicted RBP16.34■□□□□ 0.21
SF3B4-201ENST00000271628 FAM155AB1AL88 458 aaPredicted RBP16.34■□□□□ 0.21
SF3B4-201ENST00000271628 TSPAN1O60635 241 aa16.34■□□□□ 0.21
SF3B4-201ENST00000271628 RNF40O75150 1001 aa16.34■□□□□ 0.21
SF3B4-201ENST00000271628 TM4SF4P48230 202 aa16.34■□□□□ 0.21
SF3B4-201ENST00000271628 TNNC1P63316 161 aa16.34■□□□□ 0.21
SF3B4-201ENST00000271628 MFSD10Q14728 455 aa16.34■□□□□ 0.21
SF3B4-201ENST00000271628 CCL14Q16627 93 aa16.34■□□□□ 0.21
SF3B4-201ENST00000271628 NT5DC4Q86YG4 428 aa16.34■□□□□ 0.21
SF3B4-201ENST00000271628 CD302Q8IX05 232 aa16.34■□□□□ 0.21
SF3B4-201ENST00000271628 UBL4BQ8N7F7 174 aa16.34■□□□□ 0.21
SF3B4-201ENST00000271628 UBR7Q8N806 425 aa16.34■□□□□ 0.21
SF3B4-201ENST00000271628 ZNF564Q8TBZ8 553 aaPredicted RBP16.34■□□□□ 0.21
SF3B4-201ENST00000271628 KAT2BQ92831 832 aa16.34■□□□□ 0.21
SF3B4-201ENST00000271628 CPB2Q96IY4 423 aa16.34■□□□□ 0.21
SF3B4-201ENST00000271628 VCPIP1Q96JH7 1222 aa16.34■□□□□ 0.21
SF3B4-201ENST00000271628 NUP85Q9BW27 656 aa16.34■□□□□ 0.21
SF3B4-201ENST00000271628 SMARCAL1Q9NZC9 954 aa16.34■□□□□ 0.21
SF3B4-201ENST00000271628 CNOT8Q9UFF9 292 aaKnown RBP16.34■□□□□ 0.21
SF3B4-201ENST00000271628 TMEM59LQ9UK28 342 aa16.34■□□□□ 0.21
SF3B4-201ENST00000271628 UMODL1Q5DID0 1318 aa16.34■□□□□ 0.21
SF3B4-201ENST00000271628 LACTBL1A8MY62 500 aa16.34■□□□□ 0.21
SF3B4-201ENST00000271628 IGHA2P01877 340 aa16.34■□□□□ 0.21
SF3B4-201ENST00000271628 CRHR2Q13324 411 aa16.34■□□□□ 0.21
SF3B4-201ENST00000271628 DCAF4L1Q3SXM0 396 aa16.34■□□□□ 0.21
SF3B4-201ENST00000271628 MCOLN2Q8IZK6 566 aa16.34■□□□□ 0.21
SF3B4-201ENST00000271628 NAP1L3Q99457 506 aaPredicted RBP16.34■□□□□ 0.21
SF3B4-201ENST00000271628 FAM204AQ9H8W3 233 aa16.34■□□□□ 0.21
SF3B4-201ENST00000271628 AVENQ9NQS1 362 aaPredicted RBP16.34■□□□□ 0.21
SF3B4-201ENST00000271628 CCDC188H7C350 402 aa16.33■□□□□ 0.21
SF3B4-201ENST00000271628 HAS3O00219 553 aa16.33■□□□□ 0.21
SF3B4-201ENST00000271628 ZNF132P52740 706 aa16.33■□□□□ 0.21
SF3B4-201ENST00000271628 TMEM192Q8IY95 271 aa16.33■□□□□ 0.21
SF3B4-201ENST00000271628 AENQ8WTP8 325 aaKnown RBP16.33■□□□□ 0.21
SF3B4-201ENST00000271628 CYFIP2Q96F07 1278 aa16.33■□□□□ 0.21
SF3B4-201ENST00000271628 HHIPL1Q96JK4 782 aa16.33■□□□□ 0.21
SF3B4-201ENST00000271628 ACAP3Q96P50 834 aa16.33■□□□□ 0.21
SF3B4-201ENST00000271628 WNT8AQ9H1J5 351 aa16.33■□□□□ 0.21
SF3B4-201ENST00000271628 ADAMTS10Q9H324 1103 aa16.33■□□□□ 0.21
SF3B4-201ENST00000271628 CISHQ9NSE2 258 aa16.33■□□□□ 0.21
SF3B4-201ENST00000271628 STIM2Q9P246 746 aa16.33■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms