RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 CNOT7Q9UIV1 285 aaKnown RBP20.12■□□□□ 0.81
UPF1-201ENST00000262803 VPS9D1Q9Y2B5 631 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 SUPT3HO75486 399 aa20.11■□□□□ 0.81
UPF1-201ENST00000262803 ACTN3Q08043 901 aaPredicted RBP20.11■□□□□ 0.81
UPF1-201ENST00000262803 SLC35G2Q8TBE7 412 aa20.11■□□□□ 0.81
UPF1-201ENST00000262803 VCPKMTQ9H867 229 aa20.11■□□□□ 0.81
UPF1-201ENST00000262803 C17orf75Q9HAS0 396 aa20.11■□□□□ 0.81
UPF1-201ENST00000262803 ARHGAP10A1A4S6 786 aa20.11■□□□□ 0.81
UPF1-201ENST00000262803 BYSLQ13895 437 aaKnown RBP20.11■□□□□ 0.81
UPF1-201ENST00000262803 PRUNE1Q86TP1 453 aa20.11■□□□□ 0.81
UPF1-201ENST00000262803 SMYD3Q9H7B4 428 aa20.11■□□□□ 0.81
UPF1-201ENST00000262803 ANKEF1Q9NU02 776 aa20.11■□□□□ 0.81
UPF1-201ENST00000262803 HSPBP1Q9NZL4 362 aa20.11■□□□□ 0.81
UPF1-201ENST00000262803 CNTNAP5Q8WYK1 1306 aa20.11■□□□□ 0.81
UPF1-201ENST00000262803 UBA6A0AVT1 1052 aaPredicted RBP20.11■□□□□ 0.81
UPF1-201ENST00000262803 CDH2P19022 906 aaPredicted RBP20.11■□□□□ 0.81
UPF1-201ENST00000262803 ATPAF2Q8N5M1 289 aa20.11■□□□□ 0.81
UPF1-201ENST00000262803 TMCO5AQ8N6Q1 288 aa20.11■□□□□ 0.81
UPF1-201ENST00000262803 SENP7Q9BQF6 1050 aa20.11■□□□□ 0.81
UPF1-201ENST00000262803 CYP2C8P10632 490 aa20.11■□□□□ 0.81
UPF1-201ENST00000262803 KCNA2P16389 499 aa20.11■□□□□ 0.81
UPF1-201ENST00000262803 FMO5P49326 533 aa20.11■□□□□ 0.81
UPF1-201ENST00000262803 ARSEP51690 589 aa20.11■□□□□ 0.81
UPF1-201ENST00000262803 GRIN1Q05586 938 aa20.11■□□□□ 0.81
UPF1-201ENST00000262803 SPATA16Q9BXB7 569 aa20.11■□□□□ 0.81
UPF1-201ENST00000262803 CCDC195A0A1B0GUA6 201 aa20.1■□□□□ 0.81
UPF1-201ENST00000262803 DFFAO00273 331 aa20.1■□□□□ 0.81
UPF1-201ENST00000262803 STAG3L1P0CL83 205 aa20.1■□□□□ 0.81
UPF1-201ENST00000262803 MUTP22033 750 aa20.1■□□□□ 0.81
UPF1-201ENST00000262803 C1orf146Q5VVC0 180 aa20.1■□□□□ 0.81
UPF1-201ENST00000262803 ANO5Q75V66 913 aa20.1■□□□□ 0.81
UPF1-201ENST00000262803 CD302Q8IX05 232 aa20.1■□□□□ 0.81
UPF1-201ENST00000262803 ANLNQ9NQW6 1124 aa20.1■□□□□ 0.81
UPF1-201ENST00000262803 ZFATQ9P243 1243 aa20.1■□□□□ 0.81
UPF1-201ENST00000262803 LRRIQ3A6PVS8 624 aaPredicted RBP20.1■□□□□ 0.81
UPF1-201ENST00000262803 MDH1P40925 334 aaKnown RBP20.1■□□□□ 0.81
UPF1-201ENST00000262803 EIF3EP60228 445 aaKnown RBP20.1■□□□□ 0.81
UPF1-201ENST00000262803 LAMC2Q13753 1193 aa20.1■□□□□ 0.81
UPF1-201ENST00000262803 TRIM51Q9BSJ1 452 aa20.1■□□□□ 0.81
UPF1-201ENST00000262803 AIPL1Q9NZN9 384 aa20.1■□□□□ 0.81
UPF1-201ENST00000262803 PSMD14O00487 310 aa20.1■□□□□ 0.81
UPF1-201ENST00000262803 RARBP10826 455 aa20.1■□□□□ 0.81
UPF1-201ENST00000262803 IL10P22301 178 aa20.1■□□□□ 0.81
UPF1-201ENST00000262803 SSTR3P32745 418 aaPredicted RBP20.1■□□□□ 0.81
UPF1-201ENST00000262803 LCA5Q86VQ0 697 aa20.1■□□□□ 0.81
UPF1-201ENST00000262803 AGBL3Q8NEM8 1001 aa20.1■□□□□ 0.81
UPF1-201ENST00000262803 ECT2Q9H8V3 914 aa20.1■□□□□ 0.81
UPF1-201ENST00000262803 AGAP1Q9UPQ3 857 aa20.1■□□□□ 0.81
UPF1-201ENST00000262803 CFAP73A6NFT4 308 aa20.1■□□□□ 0.81
UPF1-201ENST00000262803 HOXA2O43364 376 aa20.1■□□□□ 0.81
UPF1-201ENST00000262803 KCNA1Q09470 495 aa20.1■□□□□ 0.81
UPF1-201ENST00000262803 NDEL1Q9GZM8 345 aa20.1■□□□□ 0.81
UPF1-201ENST00000262803 RBM12Q9NTZ6 932 aaKnown RBP20.1■□□□□ 0.81
UPF1-201ENST00000262803 ZNF70Q9UC06 446 aaPredicted RBP20.1■□□□□ 0.81
UPF1-201ENST00000262803 MYCP01106 439 aaPredicted RBP20.09■□□□□ 0.81
UPF1-201ENST00000262803 HSPA9P38646 679 aaKnown RBP20.09■□□□□ 0.81
UPF1-201ENST00000262803 HIF1AQ16665 826 aa20.09■□□□□ 0.81
UPF1-201ENST00000262803 SH2D3AQ9BRG2 576 aa20.09■□□□□ 0.81
UPF1-201ENST00000262803 FHOD1Q9Y613 1164 aa20.09■□□□□ 0.81
UPF1-201ENST00000262803 PRPF4O43172 522 aaKnown RBP eCLIP20.09■□□□□ 0.81
UPF1-201ENST00000262803 RPS6KA5O75582 802 aa20.09■□□□□ 0.81
UPF1-201ENST00000262803 NDUFB10O96000 172 aa20.09■□□□□ 0.81
UPF1-201ENST00000262803 C16orf86Q6ZW13 317 aa20.09■□□□□ 0.81
UPF1-201ENST00000262803 GPRC5AQ8NFJ5 357 aa20.09■□□□□ 0.81
UPF1-201ENST00000262803 RASA1P20936 1047 aa20.09■□□□□ 0.81
UPF1-201ENST00000262803 ARL4DP49703 201 aa20.09■□□□□ 0.81
UPF1-201ENST00000262803 RGS4P49798 205 aa20.09■□□□□ 0.81
UPF1-201ENST00000262803 FASTKD1Q53R41 847 aaKnown RBP20.09■□□□□ 0.81
UPF1-201ENST00000262803 ZC3H12BQ5HYM0 836 aaKnown RBP20.09■□□□□ 0.81
UPF1-201ENST00000262803 EFHC1Q5JVL4 640 aa20.09■□□□□ 0.81
UPF1-201ENST00000262803 OPTNQ96CV9 577 aa20.09■□□□□ 0.81
UPF1-201ENST00000262803 SLC13A1Q9BZW2 595 aa20.09■□□□□ 0.81
UPF1-201ENST00000262803 ERAP1Q9NZ08 941 aa20.09■□□□□ 0.81
UPF1-201ENST00000262803 IQSEC2Q5JU85 1478 aa20.09■□□□□ 0.81
UPF1-201ENST00000262803 SLC2A3P11169 496 aa20.09■□□□□ 0.81
UPF1-201ENST00000262803 ARHGEF7Q14155 803 aa20.09■□□□□ 0.81
UPF1-201ENST00000262803 EMC2Q15006 297 aa20.09■□□□□ 0.81
UPF1-201ENST00000262803 SIK2Q9H0K1 926 aa20.09■□□□□ 0.81
UPF1-201ENST00000262803 CAMTA2O94983 1202 aa20.08■□□□□ 0.81
UPF1-201ENST00000262803 HOXC6P09630 235 aa20.08■□□□□ 0.81
UPF1-201ENST00000262803 LCP1P13796 627 aa20.08■□□□□ 0.81
UPF1-201ENST00000262803 KRT4P19013 534 aa20.08■□□□□ 0.81
UPF1-201ENST00000262803 HMOX2P30519 316 aa20.08■□□□□ 0.81
UPF1-201ENST00000262803 NAB2Q15742 525 aa20.08■□□□□ 0.81
UPF1-201ENST00000262803 BARGINQ6ZT62 677 aa20.08■□□□□ 0.81
UPF1-201ENST00000262803 NYAP1Q6ZVC0 841 aa20.08■□□□□ 0.81
UPF1-201ENST00000262803 KCNV2Q8TDN2 545 aa20.08■□□□□ 0.81
UPF1-201ENST00000262803 RIN2Q8WYP3 895 aaPredicted RBP20.08■□□□□ 0.81
UPF1-201ENST00000262803 GPRASP2Q96D09 838 aa20.08■□□□□ 0.81
UPF1-201ENST00000262803 SLC30A1Q9Y6M5 507 aa20.08■□□□□ 0.81
UPF1-201ENST00000262803 F5H423 210 aaPredicted RBP20.08■□□□□ 0.81
UPF1-201ENST00000262803 OCM2P0CE71 109 aa20.08■□□□□ 0.81
UPF1-201ENST00000262803 OCMP0CE72 109 aaPredicted RBP20.08■□□□□ 0.81
UPF1-201ENST00000262803 PDIA6Q15084 440 aa20.08■□□□□ 0.81
UPF1-201ENST00000262803 SMIM5Q71RC9 77 aa20.08■□□□□ 0.81
UPF1-201ENST00000262803 SMARCAL1Q9NZC9 954 aa20.08■□□□□ 0.81
UPF1-201ENST00000262803 SH3BP1Q9Y3L3 701 aa20.08■□□□□ 0.81
UPF1-201ENST00000262803 PITPNM2Q9BZ72 1349 aa20.08■□□□□ 0.8
UPF1-201ENST00000262803 AGTP01019 485 aa20.08■□□□□ 0.8
UPF1-201ENST00000262803 SLC9A1P19634 815 aa20.08■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms