RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 FAM213AQ9BRX8 229 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 HOMER3Q9NSC5 361 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 RAB20Q9NX57 234 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 USP15Q9Y4E8 981 aaPredicted RBP10.7□□□□□ -0.7
LIG3-201ENST00000262327 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.7□□□□□ -0.7
LIG3-201ENST00000262327 ZSCAN5DPP0CG00 497 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 ATF2P15336 505 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 STX2P32856 288 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 PSMC4P43686 418 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 MTMR1Q13613 665 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 ITIH4Q14624 930 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 TMED2Q15363 201 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 NBPF12Q5TAG4 269 aaPredicted RBP10.69□□□□□ -0.7
LIG3-201ENST00000262327 ACAD10Q6JQN1 1059 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 USP50Q70EL3 339 aaPredicted RBP10.69□□□□□ -0.7
LIG3-201ENST00000262327 FITM2Q8N6M3 262 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 GLIS1Q8NBF1 620 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 AGAP11Q8TF27 550 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 DDX1Q92499 740 aaKnown RBP10.69□□□□□ -0.7
LIG3-201ENST00000262327 TGS1Q96RS0 853 aaKnown RBP10.69□□□□□ -0.7
LIG3-201ENST00000262327 C11orf70Q9BRQ4 267 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 NSRP1Q9H0G5 558 aaKnown RBP10.69□□□□□ -0.7
LIG3-201ENST00000262327 EHMT1Q9H9B1 1298 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 KIF9Q9HAQ2 790 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 NINJ2Q9NZG7 142 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 KCND2Q9NZV8 630 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 KRT16P08779 473 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 KRT10P13645 584 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 ETS1P14921 441 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 RFX1P22670 979 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 IVDP26440 423 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 GBP2P32456 591 aaPredicted RBP10.69□□□□□ -0.7
LIG3-201ENST00000262327 NPTX2P47972 431 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 WNT7BP56706 349 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 TAS2R40P59535 323 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 WLSQ5T9L3 541 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 CYFIP1Q7L576 1253 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 GSTA5Q7RTV2 222 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 FBXL13Q8NEE6 735 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 KLHL29Q96CT2 875 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 BICD1Q96G01 975 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 LRRC19Q9H756 370 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 TBX20Q9UMR3 447 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 NAALADL1Q9UQQ1 740 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 MROH7Q68CQ1 1323 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 POC1B-GALNT4F8VUJ3 575 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 PLA2G6O60733 806 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 SKAP2O75563 359 aaPredicted RBP10.69□□□□□ -0.7
LIG3-201ENST00000262327 GGPS1O95749 300 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 TTC4O95801 387 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 CCNE2O96020 404 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 TCF4P15884 667 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 GTF2BQ00403 316 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 GRIK3Q13003 919 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 SLC39A4Q6P5W5 647 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 ZC3H15Q8WU90 426 aaKnown RBP10.69□□□□□ -0.7
LIG3-201ENST00000262327 DCPSQ96C86 337 aaKnown RBP10.69□□□□□ -0.7
LIG3-201ENST00000262327 SNF8Q96H20 258 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 RUNDC3BQ96NL0 473 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 RIT2Q99578 217 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 AGO4Q9HCK5 861 aaKnown RBP10.69□□□□□ -0.7
LIG3-201ENST00000262327 RPS6KL1Q9Y6S9 549 aa10.69□□□□□ -0.7
LIG3-201ENST00000262327 GLTPD2A6NH11 291 aa10.68□□□□□ -0.7
LIG3-201ENST00000262327 FSCN2O14926 492 aa10.68□□□□□ -0.7
LIG3-201ENST00000262327 HNRNPDLO14979 420 aaKnown RBP10.68□□□□□ -0.7
LIG3-201ENST00000262327 CLNS1AP54105 237 aaKnown RBP10.68□□□□□ -0.7
LIG3-201ENST00000262327 MGAT5Q09328 741 aa10.68□□□□□ -0.7
LIG3-201ENST00000262327 CRYMQ14894 314 aa10.68□□□□□ -0.7
LIG3-201ENST00000262327 NAA25Q14CX7 972 aa10.68□□□□□ -0.7
LIG3-201ENST00000262327 CLEC16AQ2KHT3 1053 aa10.68□□□□□ -0.7
LIG3-201ENST00000262327 SEZ6Q53EL9 994 aa10.68□□□□□ -0.7
LIG3-201ENST00000262327 TNFAIP8L3Q5GJ75 292 aa10.68□□□□□ -0.7
LIG3-201ENST00000262327 KCNV2Q8TDN2 545 aa10.68□□□□□ -0.7
LIG3-201ENST00000262327 DCLK3Q9C098 648 aa10.68□□□□□ -0.7
LIG3-201ENST00000262327 STMN4Q9H169 189 aaPredicted RBP10.68□□□□□ -0.7
LIG3-201ENST00000262327 ADGRA3Q8IWK6 1321 aa10.68□□□□□ -0.7
LIG3-201ENST00000262327 BANF1O75531 89 aa10.68□□□□□ -0.7
LIG3-201ENST00000262327 NQO1P15559 274 aaKnown RBP10.68□□□□□ -0.7
LIG3-201ENST00000262327 FOXN2P32314 431 aa10.68□□□□□ -0.7
LIG3-201ENST00000262327 ACOT2P49753 483 aa10.68□□□□□ -0.7
LIG3-201ENST00000262327 RNASELQ05823 741 aaKnown RBP10.68□□□□□ -0.7
LIG3-201ENST00000262327 CLUL1Q15846 466 aa10.68□□□□□ -0.7
LIG3-201ENST00000262327 CGB2Q6NT52 195 aa10.68□□□□□ -0.7
LIG3-201ENST00000262327 RHBDF2Q6PJF5 856 aa10.68□□□□□ -0.7
LIG3-201ENST00000262327 TRMT10CQ7L0Y3 403 aaKnown RBP10.68□□□□□ -0.7
LIG3-201ENST00000262327 SPATA21Q7Z572 469 aa10.68□□□□□ -0.7
LIG3-201ENST00000262327 SLC17A8Q8NDX2 589 aa10.68□□□□□ -0.7
LIG3-201ENST00000262327 TMEM161BQ8NDZ6 487 aa10.68□□□□□ -0.7
LIG3-201ENST00000262327 NSMCE1Q8WV22 266 aa10.68□□□□□ -0.7
LIG3-201ENST00000262327 C10orf88Q9H8K7 445 aa10.68□□□□□ -0.7
LIG3-201ENST00000262327 KMT5AQ9NQR1 393 aa10.68□□□□□ -0.7
LIG3-201ENST00000262327 ZNF536O15090 1300 aa10.67□□□□□ -0.7
LIG3-201ENST00000262327 AP1G2O75843 785 aa10.67□□□□□ -0.7
LIG3-201ENST00000262327 SUN1O94901 812 aa10.67□□□□□ -0.7
LIG3-201ENST00000262327 FASTKD3Q14CZ7 662 aaKnown RBP10.67□□□□□ -0.7
LIG3-201ENST00000262327 IZUMO3Q5VZ72 239 aa10.67□□□□□ -0.7
LIG3-201ENST00000262327 MFSD5Q6N075 450 aa10.67□□□□□ -0.7
LIG3-201ENST00000262327 ZNF365Q70YC5 407 aa10.67□□□□□ -0.7
LIG3-201ENST00000262327 ANO5Q75V66 913 aa10.67□□□□□ -0.7
LIG3-201ENST00000262327 SCYL3Q8IZE3 742 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms