RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 NSMCE4AQ9NXX6 385 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 MAD2L2Q9UI95 211 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 RASA1P20936 1047 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 SSTR3P32745 418 aaPredicted RBP14.24□□□□□ -0.13
SF3A1-201ENST00000215793 C4orf22Q6V702 233 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 MCEEQ96PE7 176 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 NT5C1AQ9BXI3 368 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 EHD2Q9NZN4 543 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 LRRC7Q96NW7 1537 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 GOLGA8RI6L899 631 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 ZBTB7AO95365 584 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 SYF2O95926 243 aaKnown RBP14.24□□□□□ -0.13
SF3A1-201ENST00000215793 JAMLQ86YT9 394 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 ATPAF2Q8N5M1 289 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 AGR3Q8TD06 166 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 TEKT4Q8WW24 435 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 FAM151AQ8WW52 585 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 AGAP3Q96P47 875 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 KCNK16Q96T55 309 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 PCDHB8Q9UN66 801 aa14.24□□□□□ -0.13
SF3A1-201ENST00000215793 TLR2O60603 784 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 GH1P01241 217 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 CHN1P15882 459 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 SPRP35270 261 aaPredicted RBP14.23□□□□□ -0.13
SF3A1-201ENST00000215793 ARL8AQ96BM9 186 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 FRMD8Q9BZ67 464 aaPredicted RBP14.23□□□□□ -0.13
SF3A1-201ENST00000215793 ALG13Q9NP73 1137 aaKnown RBP14.23□□□□□ -0.13
SF3A1-201ENST00000215793 KLHL11Q9NVR0 708 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 XPO7Q9UIA9 1087 aaKnown RBP14.23□□□□□ -0.13
SF3A1-201ENST00000215793 MYBP10242 640 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 RARBP10826 455 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 KDSRQ06136 332 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 RAD9BQ6WBX8 426 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 RIBC1Q8N443 379 aaPredicted RBP14.23□□□□□ -0.13
SF3A1-201ENST00000215793 CALML6Q8TD86 181 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 PTPRN2Q92932 1015 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 YIPF3Q9GZM5 350 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 UNC45AQ9H3U1 944 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 SLC38A7Q9NVC3 462 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 PRMT7Q9NVM4 692 aaPredicted RBP14.23□□□□□ -0.13
SF3A1-201ENST00000215793 LSM7Q9UK45 103 aaKnown RBP14.23□□□□□ -0.13
SF3A1-201ENST00000215793 SLC4A7Q9Y6M7 1214 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 FAM95CA0A1B0GW59 222 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 POLRMTO00411 1230 aaKnown RBP14.23□□□□□ -0.13
SF3A1-201ENST00000215793 EIF3HO15372 352 aaKnown RBP eCLIP14.23□□□□□ -0.13
SF3A1-201ENST00000215793 SUPT3HO75486 399 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 KRT16P08779 473 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 SLC9A1P19634 815 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 RGS7P49802 495 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 PDAP1Q13442 181 aaKnown RBP14.23□□□□□ -0.13
SF3A1-201ENST00000215793 PDK1Q15118 436 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 SMAD1Q15797 465 aaKnown RBP14.23□□□□□ -0.13
SF3A1-201ENST00000215793 ANKS1AQ92625 1134 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 CLMNQ96JQ2 1002 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 GJD4Q96KN9 370 aaPredicted RBP14.23□□□□□ -0.13
SF3A1-201ENST00000215793 FAM167BQ9BTA0 163 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 ANKEF1Q9NU02 776 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 IGSF9BQ9UPX0 1349 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 MTSS1O43312 755 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 HLA-DRAP01903 254 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 ANTXR2P58335 489 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 USP10Q14694 798 aaKnown RBP14.23□□□□□ -0.13
SF3A1-201ENST00000215793 CDC42EP5Q6NZY7 148 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 NR1H4Q96RI1 486 aaPredicted RBP14.23□□□□□ -0.13
SF3A1-201ENST00000215793 ERGIC2Q96RQ1 377 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 SH2D3AQ9BRG2 576 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 MXRA8Q9BRK3 442 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 MOV10L1Q9BXT6 1211 aaKnown RBP14.23□□□□□ -0.13
SF3A1-201ENST00000215793 FAM129AQ9BZQ8 928 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 ARHGEF38Q9NXL2 777 aa14.23□□□□□ -0.13
SF3A1-201ENST00000215793 ZC3H4Q9UPT8 1303 aaKnown RBP14.22□□□□□ -0.13
SF3A1-201ENST00000215793 CDH2P19022 906 aaPredicted RBP14.22□□□□□ -0.13
SF3A1-201ENST00000215793 PCSK1P29120 753 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 CENPCQ03188 943 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 IER5Q5VY09 327 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 ZNF473Q8WTR7 871 aaKnown RBP14.22□□□□□ -0.13
SF3A1-201ENST00000215793 GTF3C2Q8WUA4 911 aaPredicted RBP14.22□□□□□ -0.13
SF3A1-201ENST00000215793 XPO6Q96QU8 1125 aaKnown RBP14.22□□□□□ -0.13
SF3A1-201ENST00000215793 MRPL1Q9BYD6 325 aaKnown RBP14.22□□□□□ -0.13
SF3A1-201ENST00000215793 KCNF1Q9H3M0 494 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 RBM12Q9NTZ6 932 aaKnown RBP14.22□□□□□ -0.13
SF3A1-201ENST00000215793 ALG6Q9Y672 507 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 ALDH18A1P54886 795 aaKnown RBP14.22□□□□□ -0.13
SF3A1-201ENST00000215793 PRKCEQ02156 737 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 PRR5LQ6MZQ0 368 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 USP49Q70CQ1 688 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 RDM1Q8NG50 284 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 SPATA17Q96L03 361 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 NIF3L1Q9GZT8 377 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 KCNH4Q9UQ05 1017 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 TRAF3IP3Q9Y228 551 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 SLC30A1Q9Y6M5 507 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 SNRPAP09012 282 aaKnown RBP14.22□□□□□ -0.13
SF3A1-201ENST00000215793 COMTP21964 271 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 MICALL2Q8IY33 904 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 TAGAPQ8N103 731 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 ERP44Q9BS26 406 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 AURKCQ9UQB9 309 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 TARBP1Q13395 1621 aaKnown RBP14.22□□□□□ -0.13
SF3A1-201ENST00000215793 ZSCAN9O15535 394 aaPredicted RBP14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms