RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 FRYLO94915 3013 aa15.21■□□□□ 0.03
LINC00339-211ENST00000641009 VPS37CA5D8V6 355 aaPredicted RBP15.2■□□□□ 0.02
LINC00339-211ENST00000641009 CLDN3O15551 220 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 CXCL8P10145 99 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 PLCG1P19174 1290 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 CLCN5P51795 746 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 MCL1Q07820 350 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 KARSQ15046 597 aaKnown RBP15.2■□□□□ 0.02
LINC00339-211ENST00000641009 SF3A1Q15459 793 aaKnown RBP15.2■□□□□ 0.02
LINC00339-211ENST00000641009 VARS2Q5ST30 1063 aaKnown RBP15.2■□□□□ 0.02
LINC00339-211ENST00000641009 ATOH1Q92858 354 aaPredicted RBP15.2■□□□□ 0.02
LINC00339-211ENST00000641009 BICD1Q96G01 975 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 BLOC1S4Q9NUP1 217 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 HCFC1R1Q9NWW0 138 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 KRBA1A5PL33 1030 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 ANHXE9PGG2 379 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 SLC26A4O43511 780 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 PI15O43692 258 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 XYLBO75191 536 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 BMP15O95972 392 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 RPL9P32969 192 aaKnown RBP15.2■□□□□ 0.02
LINC00339-211ENST00000641009 LONP1P36776 959 aaKnown RBP15.2■□□□□ 0.02
LINC00339-211ENST00000641009 NUBP1P53384 320 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 SPAG1Q07617 926 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 CUL4AQ13619 759 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 HTR4Q13639 388 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 MCM6Q14566 821 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 HAUS6Q7Z4H7 955 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 RASSF8Q8NHQ8 419 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 ITFG1Q8TB96 612 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 NXPE3Q969Y0 559 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 TUBGCP4Q9UGJ1 667 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 ODF2LQ9ULJ1 636 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 CA14Q9ULX7 337 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 NUB1Q9Y5A7 615 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 NUMBLQ9Y6R0 609 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 SCN1AP35498 2009 aa15.2■□□□□ 0.02
LINC00339-211ENST00000641009 TSC2P49815 1807 aa15.19■□□□□ 0.02
LINC00339-211ENST00000641009 WDR27A2RRH5 827 aa15.19■□□□□ 0.02
LINC00339-211ENST00000641009 H0YCG3 227 aa15.19■□□□□ 0.02
LINC00339-211ENST00000641009 SRFP11831 508 aa15.19■□□□□ 0.02
LINC00339-211ENST00000641009 AOC1P19801 751 aa15.19■□□□□ 0.02
LINC00339-211ENST00000641009 TNFSF9P41273 254 aa15.19■□□□□ 0.02
LINC00339-211ENST00000641009 ROR1Q01973 937 aa15.19■□□□□ 0.02
LINC00339-211ENST00000641009 UVSSAQ2YD98 709 aa15.19■□□□□ 0.02
LINC00339-211ENST00000641009 SLC8B1Q6J4K2 584 aa15.19■□□□□ 0.02
LINC00339-211ENST00000641009 MYCT1Q8N699 235 aa15.19■□□□□ 0.02
LINC00339-211ENST00000641009 GPR152Q8TDT2 470 aa15.19■□□□□ 0.02
LINC00339-211ENST00000641009 RAD54LQ92698 747 aa15.19■□□□□ 0.02
LINC00339-211ENST00000641009 FGF13Q92913 245 aa15.19■□□□□ 0.02
LINC00339-211ENST00000641009 FGF14Q92915 247 aa15.19■□□□□ 0.02
LINC00339-211ENST00000641009 RPP25Q9BUL9 199 aaKnown RBP15.19■□□□□ 0.02
LINC00339-211ENST00000641009 DNMT3BQ9UBC3 853 aaKnown RBP15.19■□□□□ 0.02
LINC00339-211ENST00000641009 WNT16Q9UBV4 365 aa15.19■□□□□ 0.02
LINC00339-211ENST00000641009 CDH7Q9ULB5 785 aa15.19■□□□□ 0.02
LINC00339-211ENST00000641009 COL4A3Q01955 1670 aa15.19■□□□□ 0.02
LINC00339-211ENST00000641009 K7ENM7 598 aa15.18■□□□□ 0.02
LINC00339-211ENST00000641009 SYN3O14994 580 aa15.18■□□□□ 0.02
LINC00339-211ENST00000641009 FAM13AO94988 1023 aa15.18■□□□□ 0.02
LINC00339-211ENST00000641009 MCM4P33991 863 aa15.18■□□□□ 0.02
LINC00339-211ENST00000641009 LIG4P49917 911 aa15.18■□□□□ 0.02
LINC00339-211ENST00000641009 ZNF131P52739 623 aa15.18■□□□□ 0.02
LINC00339-211ENST00000641009 ARPP19P56211 112 aa15.18■□□□□ 0.02
LINC00339-211ENST00000641009 PABPC1LQ4VXU2 614 aaKnown RBP15.18■□□□□ 0.02
LINC00339-211ENST00000641009 SPECC1Q5M775 1068 aa15.18■□□□□ 0.02
LINC00339-211ENST00000641009 ZBTB41Q5SVQ8 909 aa15.18■□□□□ 0.02
LINC00339-211ENST00000641009 PARM1Q6UWI2 310 aa15.18■□□□□ 0.02
LINC00339-211ENST00000641009 ZNF461Q8TAF7 563 aa15.18■□□□□ 0.02
LINC00339-211ENST00000641009 IRF2BPLQ9H1B7 796 aa15.18■□□□□ 0.02
LINC00339-211ENST00000641009 ZHX3Q9H4I2 956 aa15.18■□□□□ 0.02
LINC00339-211ENST00000641009 PARVGQ9HBI0 331 aa15.18■□□□□ 0.02
LINC00339-211ENST00000641009 TBX20Q9UMR3 447 aa15.18■□□□□ 0.02
LINC00339-211ENST00000641009 CLIC4Q9Y696 253 aa15.18■□□□□ 0.02
LINC00339-211ENST00000641009 ZFP37Q9Y6Q3 630 aaPredicted RBP15.18■□□□□ 0.02
LINC00339-211ENST00000641009 RIF1Q5UIP0 2472 aaKnown RBP15.17■□□□□ 0.02
LINC00339-211ENST00000641009 TTC26A0AVF1 554 aa15.17■□□□□ 0.02
LINC00339-211ENST00000641009 STK25O00506 426 aa15.17■□□□□ 0.02
LINC00339-211ENST00000641009 HNRNPDLO14979 420 aaKnown RBP15.17■□□□□ 0.02
LINC00339-211ENST00000641009 FAM189A1O60320 539 aa15.17■□□□□ 0.02
LINC00339-211ENST00000641009 TBC1D4O60343 1298 aa15.17■□□□□ 0.02
LINC00339-211ENST00000641009 ABLIM3O94929 683 aa15.17■□□□□ 0.02
LINC00339-211ENST00000641009 KRT18P05783 430 aaKnown RBP15.17■□□□□ 0.02
LINC00339-211ENST00000641009 POU2F2P09086 479 aa15.17■□□□□ 0.02
LINC00339-211ENST00000641009 CLTAP09496 248 aa15.17■□□□□ 0.02
LINC00339-211ENST00000641009 MRPL58Q14197 206 aaKnown RBP15.17■□□□□ 0.02
LINC00339-211ENST00000641009 USP49Q70CQ1 688 aa15.17■□□□□ 0.02
LINC00339-211ENST00000641009 ING5Q8WYH8 240 aa15.17■□□□□ 0.02
LINC00339-211ENST00000641009 DDX12PQ92771 950 aa15.17■□□□□ 0.02
LINC00339-211ENST00000641009 KCNN1Q92952 543 aa15.17■□□□□ 0.02
LINC00339-211ENST00000641009 KIF12Q96FN5 646 aa15.17■□□□□ 0.02
LINC00339-211ENST00000641009 EPSTI1Q96J88 318 aa15.17■□□□□ 0.02
LINC00339-211ENST00000641009 SUSD3Q96L08 255 aa15.17■□□□□ 0.02
LINC00339-211ENST00000641009 PLEKHA5Q9HAU0 1116 aa15.17■□□□□ 0.02
LINC00339-211ENST00000641009 FBXL5Q9UKA1 691 aa15.17■□□□□ 0.02
LINC00339-211ENST00000641009 CACNA1IQ9P0X4 2223 aa15.16■□□□□ 0.02
LINC00339-211ENST00000641009 PRRG1O14668 218 aa15.16■□□□□ 0.02
LINC00339-211ENST00000641009 TRAK2O60296 914 aa15.16■□□□□ 0.02
LINC00339-211ENST00000641009 MARCKSP29966 332 aaPredicted RBP15.16■□□□□ 0.02
LINC00339-211ENST00000641009 NMT1P30419 496 aaKnown RBP15.16■□□□□ 0.02
LINC00339-211ENST00000641009 ELF1P32519 619 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms