RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 PODXLO00592 558 aa16.48■□□□□ 0.23
SYNE2-228ENST00000639659 OR52Z1P0C646 297 aa16.48■□□□□ 0.23
SYNE2-228ENST00000639659 MYL4P12829 197 aa16.48■□□□□ 0.23
SYNE2-228ENST00000639659 GDI1P31150 447 aa16.48■□□□□ 0.23
SYNE2-228ENST00000639659 RBM25P49756 843 aaKnown RBP16.48■□□□□ 0.23
SYNE2-228ENST00000639659 SOX4Q06945 474 aaPredicted RBP16.48■□□□□ 0.23
SYNE2-228ENST00000639659 ZNF174Q15697 407 aa16.48■□□□□ 0.23
SYNE2-228ENST00000639659 ME3Q16798 604 aa16.48■□□□□ 0.23
SYNE2-228ENST00000639659 ZNF568Q3ZCX4 644 aa16.48■□□□□ 0.23
SYNE2-228ENST00000639659 FAM78AQ5JUQ0 283 aa16.48■□□□□ 0.23
SYNE2-228ENST00000639659 POTEHQ6S545 545 aa16.48■□□□□ 0.23
SYNE2-228ENST00000639659 CD300LGQ6UXG3 332 aa16.48■□□□□ 0.23
SYNE2-228ENST00000639659 ELMOD1Q8N336 334 aa16.48■□□□□ 0.23
SYNE2-228ENST00000639659 GPR161Q8N6U8 529 aaKnown RBP16.48■□□□□ 0.23
SYNE2-228ENST00000639659 NSUN7Q8NE18 718 aaKnown RBP16.48■□□□□ 0.23
SYNE2-228ENST00000639659 CLDN23Q96B33 292 aa16.48■□□□□ 0.23
SYNE2-228ENST00000639659 POLR3CQ9BUI4 534 aaPredicted RBP16.48■□□□□ 0.23
SYNE2-228ENST00000639659 TRMT61BQ9BVS5 477 aaKnown RBP16.48■□□□□ 0.23
SYNE2-228ENST00000639659 PRMT8Q9NR22 394 aaPredicted RBP16.48■□□□□ 0.23
SYNE2-228ENST00000639659 TICRRQ7Z2Z1 1910 aa16.48■□□□□ 0.23
SYNE2-228ENST00000639659 SMIM28A0A1B0GU29 152 aa16.47■□□□□ 0.23
SYNE2-228ENST00000639659 KRT37O76014 449 aa16.47■□□□□ 0.23
SYNE2-228ENST00000639659 GJA1P17302 382 aa16.47■□□□□ 0.23
SYNE2-228ENST00000639659 SDHBP21912 280 aa16.47■□□□□ 0.23
SYNE2-228ENST00000639659 CCT6AP40227 531 aaKnown RBP16.47■□□□□ 0.23
SYNE2-228ENST00000639659 RPS9P46781 194 aaKnown RBP16.47■□□□□ 0.23
SYNE2-228ENST00000639659 EFNA5P52803 228 aa16.47■□□□□ 0.23
SYNE2-228ENST00000639659 SPEM2Q0P670 501 aa16.47■□□□□ 0.23
SYNE2-228ENST00000639659 SAFBQ15424 915 aaKnown RBP eCLIP16.47■□□□□ 0.23
SYNE2-228ENST00000639659 HS6ST3Q8IZP7 471 aa16.47■□□□□ 0.23
SYNE2-228ENST00000639659 ZNF461Q8TAF7 563 aa16.47■□□□□ 0.23
SYNE2-228ENST00000639659 DNASE1L2Q92874 299 aa16.47■□□□□ 0.23
SYNE2-228ENST00000639659 BHMT2Q9H2M3 363 aa16.47■□□□□ 0.23
SYNE2-228ENST00000639659 SLITRK6Q9H5Y7 841 aa16.47■□□□□ 0.23
SYNE2-228ENST00000639659 TOPORSQ9NS56 1045 aaPredicted RBP16.47■□□□□ 0.23
SYNE2-228ENST00000639659 INSL5Q9Y5Q6 135 aa16.47■□□□□ 0.23
SYNE2-228ENST00000639659 SPTBN2O15020 2390 aa16.46■□□□□ 0.23
SYNE2-228ENST00000639659 PRR5-ARHGAP8B1AHC4 643 aa16.46■□□□□ 0.23
SYNE2-228ENST00000639659 K7ERI5 159 aa16.46■□□□□ 0.23
SYNE2-228ENST00000639659 MAN2B1O00754 1011 aa16.46■□□□□ 0.23
SYNE2-228ENST00000639659 ZNF197O14709 1029 aa16.46■□□□□ 0.23
SYNE2-228ENST00000639659 TBC1D4O60343 1298 aa16.46■□□□□ 0.23
SYNE2-228ENST00000639659 LILRB5O75023 590 aa16.46■□□□□ 0.23
SYNE2-228ENST00000639659 SEC24AO95486 1093 aa16.46■□□□□ 0.23
SYNE2-228ENST00000639659 FCARP24071 287 aa16.46■□□□□ 0.23
SYNE2-228ENST00000639659 RPA1P27694 616 aa16.46■□□□□ 0.23
SYNE2-228ENST00000639659 MCM4P33991 863 aa16.46■□□□□ 0.23
SYNE2-228ENST00000639659 ARHGAP8P85298 464 aa16.46■□□□□ 0.23
SYNE2-228ENST00000639659 PPP2R5DQ14738 602 aa16.46■□□□□ 0.23
SYNE2-228ENST00000639659 CTXN3Q4LDR2 81 aa16.46■□□□□ 0.23
SYNE2-228ENST00000639659 CYP4A22Q5TCH4 519 aa16.46■□□□□ 0.23
SYNE2-228ENST00000639659 HAUS3Q68CZ6 603 aa16.46■□□□□ 0.23
SYNE2-228ENST00000639659 IQCEQ6IPM2 695 aa16.46■□□□□ 0.23
SYNE2-228ENST00000639659 RTL10Q7L3V2 364 aa16.46■□□□□ 0.23
SYNE2-228ENST00000639659 FAM3CQ92520 227 aa16.46■□□□□ 0.23
SYNE2-228ENST00000639659 BORCS6Q96GS4 357 aa16.46■□□□□ 0.23
SYNE2-228ENST00000639659 TCHPQ9BT92 498 aa16.46■□□□□ 0.23
SYNE2-228ENST00000639659 CDT1Q9H211 546 aa16.46■□□□□ 0.23
SYNE2-228ENST00000639659 LMAN1LQ9HAT1 526 aa16.46■□□□□ 0.23
SYNE2-228ENST00000639659 PARD6AQ9NPB6 346 aa16.46■□□□□ 0.23
SYNE2-228ENST00000639659 SLC38A7Q9NVC3 462 aa16.46■□□□□ 0.23
SYNE2-228ENST00000639659 PIAS3Q9Y6X2 628 aa16.46■□□□□ 0.23
SYNE2-228ENST00000639659 ARHGEF37A1IGU5 675 aa16.45■□□□□ 0.22
SYNE2-228ENST00000639659 H7C4K7 107 aa16.45■□□□□ 0.22
SYNE2-228ENST00000639659 NRG2O14511 850 aaPredicted RBP16.45■□□□□ 0.22
SYNE2-228ENST00000639659 CPB1P15086 417 aa16.45■□□□□ 0.22
SYNE2-228ENST00000639659 VIPR2P41587 438 aa16.45■□□□□ 0.22
SYNE2-228ENST00000639659 GRM5P41594 1212 aa16.45■□□□□ 0.22
SYNE2-228ENST00000639659 CCR2P41597 374 aa16.45■□□□□ 0.22
SYNE2-228ENST00000639659 PEX3P56589 373 aa16.45■□□□□ 0.22
SYNE2-228ENST00000639659 TWF1Q12792 350 aa16.45■□□□□ 0.22
SYNE2-228ENST00000639659 GNL2Q13823 731 aaKnown RBP16.45■□□□□ 0.22
SYNE2-228ENST00000639659 PRSS36Q5K4E3 855 aa16.45■□□□□ 0.22
SYNE2-228ENST00000639659 SLC8B1Q6J4K2 584 aa16.45■□□□□ 0.22
SYNE2-228ENST00000639659 VITQ6UXI7 678 aa16.45■□□□□ 0.22
SYNE2-228ENST00000639659 KIFAP3Q92845 792 aa16.45■□□□□ 0.22
SYNE2-228ENST00000639659 IRF7Q92985 503 aa16.45■□□□□ 0.22
SYNE2-228ENST00000639659 C18orf25Q96B23 403 aaPredicted RBP16.45■□□□□ 0.22
SYNE2-228ENST00000639659 ZNF512Q96ME7 567 aaPredicted RBP16.45■□□□□ 0.22
SYNE2-228ENST00000639659 CHRDQ9H2X0 955 aa16.45■□□□□ 0.22
SYNE2-228ENST00000639659 FBXL5Q9UKA1 691 aa16.45■□□□□ 0.22
SYNE2-228ENST00000639659 TNFSF13BQ9Y275 285 aa16.45■□□□□ 0.22
SYNE2-228ENST00000639659 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.45■□□□□ 0.22
SYNE2-228ENST00000639659 CACNA1BQ00975 2339 aa16.45■□□□□ 0.22
SYNE2-228ENST00000639659 PHLPP2Q6ZVD8 1323 aa16.45■□□□□ 0.22
SYNE2-228ENST00000639659 ATF2P15336 505 aa16.44■□□□□ 0.22
SYNE2-228ENST00000639659 FZD5Q13467 585 aa16.44■□□□□ 0.22
SYNE2-228ENST00000639659 ECM1Q16610 540 aa16.44■□□□□ 0.22
SYNE2-228ENST00000639659 ZNF280DQ6N043 979 aa16.44■□□□□ 0.22
SYNE2-228ENST00000639659 ZSWIM3Q96MP5 696 aa16.44■□□□□ 0.22
SYNE2-228ENST00000639659 ZMAT2Q96NC0 199 aaKnown RBP16.44■□□□□ 0.22
SYNE2-228ENST00000639659 ASB16Q96NS5 453 aa16.44■□□□□ 0.22
SYNE2-228ENST00000639659 TARS2Q9BW92 718 aaKnown RBP16.44■□□□□ 0.22
SYNE2-228ENST00000639659 MRPL4Q9BYD3 311 aaKnown RBP16.44■□□□□ 0.22
SYNE2-228ENST00000639659 ZNF334Q9HCZ1 680 aaPredicted RBP16.44■□□□□ 0.22
SYNE2-228ENST00000639659 AVENQ9NQS1 362 aaPredicted RBP16.44■□□□□ 0.22
SYNE2-228ENST00000639659 DDX19AQ9NUU7 478 aaKnown RBP16.44■□□□□ 0.22
SYNE2-228ENST00000639659 KIAA1024Q9UPX6 916 aa16.44■□□□□ 0.22
SYNE2-228ENST00000639659 SHISA7A6NL88 538 aa16.43■□□□□ 0.22
SYNE2-228ENST00000639659 ZNF263O14978 683 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms