RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 TNFSF13BQ9Y275 285 aa21.3■■□□□ 1
CLN3-262ENST00000637699 WDR27A2RRH5 827 aa21.29■■□□□ 1
CLN3-262ENST00000637699 ABLIM3O94929 683 aa21.29■■□□□ 1
CLN3-262ENST00000637699 CCT6AP40227 531 aaKnown RBP21.29■■□□□ 1
CLN3-262ENST00000637699 RPS9P46781 194 aaKnown RBP21.29■■□□□ 1
CLN3-262ENST00000637699 ADCY1Q08828 1119 aa21.29■■□□□ 1
CLN3-262ENST00000637699 FZD5Q13467 585 aa21.29■■□□□ 1
CLN3-262ENST00000637699 SECISBP2LQ93073 1101 aaKnown RBP21.29■■□□□ 1
CLN3-262ENST00000637699 CCDC94Q9BW85 323 aaPredicted RBP21.29■■□□□ 1
CLN3-262ENST00000637699 CDT1Q9H211 546 aa21.29■■□□□ 1
CLN3-262ENST00000637699 BRD9Q9H8M2 597 aa21.29■■□□□ 1
CLN3-262ENST00000637699 TOPORSQ9NS56 1045 aaPredicted RBP21.29■■□□□ 1
CLN3-262ENST00000637699 NDRG2Q9UN36 371 aaKnown RBP21.29■■□□□ 1
CLN3-262ENST00000637699 SMG5Q9UPR3 1016 aaKnown RBP21.29■■□□□ 1
CLN3-262ENST00000637699 SHISA7A6NL88 538 aa21.28■■□□□ 1
CLN3-262ENST00000637699 CCDC169A6NNP5 214 aa21.28■■□□□ 1
CLN3-262ENST00000637699 PODXLO00592 558 aa21.28■■□□□ 1
CLN3-262ENST00000637699 SEC24AO95486 1093 aa21.28■■□□□ 1
CLN3-262ENST00000637699 ATF2P15336 505 aa21.28■■□□□ 1
CLN3-262ENST00000637699 GRM5P41594 1212 aa21.28■■□□□ 1
CLN3-262ENST00000637699 MTAPQ13126 283 aa21.28■■□□□ 1
CLN3-262ENST00000637699 ZNF568Q3ZCX4 644 aa21.28■■□□□ 1
CLN3-262ENST00000637699 FAM78AQ5JUQ0 283 aa21.28■■□□□ 1
CLN3-262ENST00000637699 PRSS36Q5K4E3 855 aa21.28■■□□□ 1
CLN3-262ENST00000637699 HAUS3Q68CZ6 603 aa21.28■■□□□ 1
CLN3-262ENST00000637699 ALKAL1Q6UXT8 129 aa21.28■■□□□ 1
CLN3-262ENST00000637699 NELL1Q92832 810 aa21.28■■□□□ 1
CLN3-262ENST00000637699 ZMAT2Q96NC0 199 aaKnown RBP21.28■■□□□ 1
CLN3-262ENST00000637699 ACO2Q99798 780 aaKnown RBP21.28■■□□□ 1
CLN3-262ENST00000637699 EPC1Q9H2F5 836 aa21.28■■□□□ 1
CLN3-262ENST00000637699 ZFP14Q9HCL3 533 aa21.28■■□□□ 1
CLN3-262ENST00000637699 SLC38A7Q9NVC3 462 aa21.28■■□□□ 1
CLN3-262ENST00000637699 KIAA1024Q9UPX6 916 aa21.28■■□□□ 1
CLN3-262ENST00000637699 NRG2O14511 850 aaPredicted RBP21.27■■□□□ 1
CLN3-262ENST00000637699 LILRB5O75023 590 aa21.27■■□□□ 1
CLN3-262ENST00000637699 MUTP22033 750 aa21.27■■□□□ 1
CLN3-262ENST00000637699 FCARP24071 287 aa21.27■■□□□ 1
CLN3-262ENST00000637699 NEK4P51957 841 aa21.27■■□□□ 1
CLN3-262ENST00000637699 PEX3P56589 373 aa21.27■■□□□ 1
CLN3-262ENST00000637699 XKR4Q5GH76 650 aa21.27■■□□□ 1
CLN3-262ENST00000637699 GPR161Q8N6U8 529 aaKnown RBP21.27■■□□□ 1
CLN3-262ENST00000637699 DNASE1L2Q92874 299 aa21.27■■□□□ 1
CLN3-262ENST00000637699 PRMT8Q9NR22 394 aaPredicted RBP21.27■■□□□ 1
CLN3-262ENST00000637699 DAXXQ9UER7 740 aaPredicted RBP21.27■■□□□ 1
CLN3-262ENST00000637699 NUB1Q9Y5A7 615 aa21.27■■□□□ 1
CLN3-262ENST00000637699 SPTBN2O15020 2390 aa21.26■□□□□ 0.99
CLN3-262ENST00000637699 H7C4K7 107 aa21.26■□□□□ 0.99
CLN3-262ENST00000637699 ZNF197O14709 1029 aa21.26■□□□□ 0.99
CLN3-262ENST00000637699 TBC1D4O60343 1298 aa21.26■□□□□ 0.99
CLN3-262ENST00000637699 CCR2P41597 374 aa21.26■□□□□ 0.99
CLN3-262ENST00000637699 NPTX2P47972 431 aa21.26■□□□□ 0.99
CLN3-262ENST00000637699 ST3GAL1Q11201 340 aa21.26■□□□□ 0.99
CLN3-262ENST00000637699 TTC38Q5R3I4 469 aa21.26■□□□□ 0.99
CLN3-262ENST00000637699 PDZD4Q76G19 769 aaPredicted RBP21.26■□□□□ 0.99
CLN3-262ENST00000637699 TCEAL8Q8IYN2 117 aa21.26■□□□□ 0.99
CLN3-262ENST00000637699 TCHPQ9BT92 498 aa21.26■□□□□ 0.99
CLN3-262ENST00000637699 TRMT61BQ9BVS5 477 aaKnown RBP21.26■□□□□ 0.99
CLN3-262ENST00000637699 TARS2Q9BW92 718 aaKnown RBP21.26■□□□□ 0.99
CLN3-262ENST00000637699 PTPRHQ9HD43 1115 aa21.26■□□□□ 0.99
CLN3-262ENST00000637699 DDX19AQ9NUU7 478 aaKnown RBP21.26■□□□□ 0.99
CLN3-262ENST00000637699 PPP4R2Q9NY27 417 aa21.26■□□□□ 0.99
CLN3-262ENST00000637699 LRWD1Q9UFC0 647 aa21.26■□□□□ 0.99
CLN3-262ENST00000637699 FBXL5Q9UKA1 691 aa21.26■□□□□ 0.99
CLN3-262ENST00000637699 INSL5Q9Y5Q6 135 aa21.26■□□□□ 0.99
CLN3-262ENST00000637699 F5P12259 2224 aa21.25■□□□□ 0.99
CLN3-262ENST00000637699 MAN2B1O00754 1011 aa21.25■□□□□ 0.99
CLN3-262ENST00000637699 SYN3O14994 580 aa21.25■□□□□ 0.99
CLN3-262ENST00000637699 ORC2Q13416 577 aaPredicted RBP21.25■□□□□ 0.99
CLN3-262ENST00000637699 CTXN3Q4LDR2 81 aa21.25■□□□□ 0.99
CLN3-262ENST00000637699 CYP4A22Q5TCH4 519 aa21.25■□□□□ 0.99
CLN3-262ENST00000637699 HS6ST3Q8IZP7 471 aa21.25■□□□□ 0.99
CLN3-262ENST00000637699 C18orf25Q96B23 403 aaPredicted RBP21.25■□□□□ 0.99
CLN3-262ENST00000637699 C8orf76Q96K31 380 aa21.25■□□□□ 0.99
CLN3-262ENST00000637699 ZSWIM3Q96MP5 696 aa21.25■□□□□ 0.99
CLN3-262ENST00000637699 ASB16Q96NS5 453 aa21.25■□□□□ 0.99
CLN3-262ENST00000637699 ACAP3Q96P50 834 aa21.25■□□□□ 0.99
CLN3-262ENST00000637699 MRPL4Q9BYD3 311 aaKnown RBP21.25■□□□□ 0.99
CLN3-262ENST00000637699 USP18Q9UMW8 372 aa21.25■□□□□ 0.99
CLN3-262ENST00000637699 PHLPP2Q6ZVD8 1323 aa21.25■□□□□ 0.99
CLN3-262ENST00000637699 HARSP12081 509 aaKnown RBP21.24■□□□□ 0.99
CLN3-262ENST00000637699 SDHBP21912 280 aa21.24■□□□□ 0.99
CLN3-262ENST00000637699 GDI1P31150 447 aa21.24■□□□□ 0.99
CLN3-262ENST00000637699 ATXN1P54253 815 aaKnown RBP21.24■□□□□ 0.99
CLN3-262ENST00000637699 MRPL58Q14197 206 aaKnown RBP21.24■□□□□ 0.99
CLN3-262ENST00000637699 TPGS2Q68CL5 300 aa21.24■□□□□ 0.99
CLN3-262ENST00000637699 IQCEQ6IPM2 695 aa21.24■□□□□ 0.99
CLN3-262ENST00000637699 TAS1R3Q7RTX0 852 aa21.24■□□□□ 0.99
CLN3-262ENST00000637699 ZNF687Q8N1G0 1237 aa21.24■□□□□ 0.99
CLN3-262ENST00000637699 ELMOD1Q8N336 334 aa21.24■□□□□ 0.99
CLN3-262ENST00000637699 IRF7Q92985 503 aa21.24■□□□□ 0.99
CLN3-262ENST00000637699 ZNF512Q96ME7 567 aaPredicted RBP21.24■□□□□ 0.99
CLN3-262ENST00000637699 FAM126AQ9BYI3 521 aaPredicted RBP21.24■□□□□ 0.99
CLN3-262ENST00000637699 HIP1RO75146 1068 aa21.23■□□□□ 0.99
CLN3-262ENST00000637699 MICAL2O94851 1124 aa21.23■□□□□ 0.99
CLN3-262ENST00000637699 MYL4P12829 197 aa21.23■□□□□ 0.99
CLN3-262ENST00000637699 KCNE1P15382 129 aa21.23■□□□□ 0.99
CLN3-262ENST00000637699 GJA1P17302 382 aa21.23■□□□□ 0.99
CLN3-262ENST00000637699 RPL9P32969 192 aaKnown RBP21.23■□□□□ 0.99
CLN3-262ENST00000637699 VIPR2P41587 438 aa21.23■□□□□ 0.99
CLN3-262ENST00000637699 FXR2P51116 673 aaKnown RBP eCLIP21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms