RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 ZNF568Q3ZCX4 644 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 CRY2Q49AN0 593 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 PREPLQ4J6C6 727 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-214ENST00000637038 ARSHQ5FYA8 562 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 HIBCHQ6NVY1 386 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-214ENST00000637038 CDC42EP5Q6NZY7 148 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 RNF207Q6ZRF8 634 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 ZNF564Q8TBZ8 553 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-214ENST00000637038 COL26A1Q96A83 441 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 TLCD1Q96CP7 247 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 SNF8Q96H20 258 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 ANKRD27Q96NW4 1050 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 RIT2Q99578 217 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.24□□□□□ -1.73
SCN1A-214ENST00000637038 BATF3Q9NR55 127 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 NOP53Q9NZM5 478 aaKnown RBP4.24□□□□□ -1.73
SCN1A-214ENST00000637038 WHRNQ9P202 907 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 ALG6Q9Y672 507 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 PTPRFP10586 1907 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 ENTPD3O75355 529 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 CTNNA2P26232 953 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 TMOD1P28289 359 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 SSTR3P32745 418 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-214ENST00000637038 RNASELQ05823 741 aaKnown RBP4.24□□□□□ -1.73
SCN1A-214ENST00000637038 TIGD5Q53EQ6 642 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 CRELD2Q6UXH1 353 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-214ENST00000637038 GET4Q7L5D6 327 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-214ENST00000637038 TRPM8Q7Z2W7 1104 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 CCDC89Q8N998 374 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-214ENST00000637038 DHX38Q92620 1227 aaKnown RBP4.24□□□□□ -1.73
SCN1A-214ENST00000637038 TTC25Q96NG3 672 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 UIMC1Q96RL1 719 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 CDX2Q99626 313 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-214ENST00000637038 LRFN3Q9BTN0 628 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 CXorf56Q9H5V9 222 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 GTF3C4Q9UKN8 822 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 USP15Q9Y4E8 981 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-214ENST00000637038 PTCH2Q9Y6C5 1203 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 LRRN2O75325 713 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 NDUFB10O96000 172 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 P4HBP07237 508 aaKnown RBP4.24□□□□□ -1.73
SCN1A-214ENST00000637038 ITGA4P13612 1032 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 DRD4P21917 467 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 NMT1P30419 496 aaKnown RBP4.24□□□□□ -1.73
SCN1A-214ENST00000637038 MAPK4P31152 587 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 ELF1P32519 619 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 COILP38432 576 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-214ENST00000637038 CENPCQ03188 943 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 STAT4Q14765 748 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 CEP55Q53EZ4 464 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 FYB2Q5VWT5 728 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 C6orf89Q6UWU4 347 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 TRIM72Q6ZMU5 477 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 GSTA5Q7RTV2 222 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 ZNF720Q7Z2F6 126 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 ADAT2Q7Z6V5 191 aaKnown RBP4.24□□□□□ -1.73
SCN1A-214ENST00000637038 SLC13A5Q86YT5 568 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-214ENST00000637038 PPM1KQ8N3J5 372 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 LNX1Q8TBB1 728 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-214ENST00000637038 CFAP57Q96MR6 1250 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 ZDHHC15Q96MV8 337 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 ELAC2Q9BQ52 826 aaKnown RBP4.24□□□□□ -1.73
SCN1A-214ENST00000637038 ZNF341Q9BYN7 854 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 CELF4Q9BZC1 486 aaKnown RBP4.24□□□□□ -1.73
SCN1A-214ENST00000637038 ATP6V0A4Q9HBG4 840 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 KCNQ5Q9NR82 932 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 C1orf112Q9NSG2 853 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 HAUS2Q9NVX0 235 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 SENP1Q9P0U3 644 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 HERC5Q9UII4 1024 aaKnown RBP4.24□□□□□ -1.73
SCN1A-214ENST00000637038 ANAPC5Q9UJX4 755 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 ARL2BPQ9Y2Y0 163 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 NFS1Q9Y697 457 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 EMSYQ7Z589 1322 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 PHF20L1A8MW92 1017 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 DDX3YO15523 660 aaKnown RBP4.24□□□□□ -1.73
SCN1A-214ENST00000637038 DCXO43602 365 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 MTA2O94776 668 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 TRIM49P0CI25 452 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 TRIM49CP0CI26 452 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 SPATA31C1P0DKV0 1188 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 KRT5P13647 590 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 GTF2H1P32780 548 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 ADCY8P40145 1251 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 RGS2P41220 211 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 SSR1P43307 286 aaKnown RBP4.24□□□□□ -1.73
SCN1A-214ENST00000637038 MMP13P45452 471 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 CASP4P49662 377 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 PPATQ06203 517 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 XRCC4Q13426 336 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 UAP1Q16222 522 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-214ENST00000637038 LDLRAD1Q5T700 205 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 MFSD5Q6N075 450 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 PADI6Q6TGC4 694 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 SMIM5Q71RC9 77 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 OTUD6AQ7L8S5 288 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 ZNF677Q86XU0 584 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 C12orf56Q8IXR9 622 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 SLC30A5Q8TAD4 765 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms