RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 MPZL3Q6UWV2 235 aa17.68■□□□□ 0.42
CLN3-246ENST00000636228 C1orf210Q8IVY1 113 aa17.68■□□□□ 0.42
CLN3-246ENST00000636228 ZNF461Q8TAF7 563 aa17.68■□□□□ 0.42
CLN3-246ENST00000636228 SLC38A7Q9NVC3 462 aa17.68■□□□□ 0.42
CLN3-246ENST00000636228 ANKFY1Q9P2R3 1169 aa17.68■□□□□ 0.42
CLN3-246ENST00000636228 RBM19Q9Y4C8 960 aaKnown RBP17.68■□□□□ 0.42
CLN3-246ENST00000636228 NUB1Q9Y5A7 615 aa17.68■□□□□ 0.42
CLN3-246ENST00000636228 KANSL1LA0AUZ9 987 aa17.67■□□□□ 0.42
CLN3-246ENST00000636228 LAD1O00515 517 aa17.67■□□□□ 0.42
CLN3-246ENST00000636228 NRG2O14511 850 aaPredicted RBP17.67■□□□□ 0.42
CLN3-246ENST00000636228 PRRG1O14668 218 aa17.67■□□□□ 0.42
CLN3-246ENST00000636228 ABLIM3O94929 683 aa17.67■□□□□ 0.42
CLN3-246ENST00000636228 POU2F2P09086 479 aa17.67■□□□□ 0.42
CLN3-246ENST00000636228 SP9P0CG40 484 aa17.67■□□□□ 0.42
CLN3-246ENST00000636228 KCNE1P15382 129 aa17.67■□□□□ 0.42
CLN3-246ENST00000636228 CEBPBP17676 345 aa17.67■□□□□ 0.42
CLN3-246ENST00000636228 PRPHP41219 470 aa17.67■□□□□ 0.42
CLN3-246ENST00000636228 SPAG1Q07617 926 aa17.67■□□□□ 0.42
CLN3-246ENST00000636228 SLC10A6Q3KNW5 377 aa17.67■□□□□ 0.42
CLN3-246ENST00000636228 SLC8B1Q6J4K2 584 aa17.67■□□□□ 0.42
CLN3-246ENST00000636228 TCEAL4Q96EI5 215 aa17.67■□□□□ 0.42
CLN3-246ENST00000636228 SHDQ96IW2 340 aa17.67■□□□□ 0.42
CLN3-246ENST00000636228 CORO1BQ9BR76 489 aa17.67■□□□□ 0.42
CLN3-246ENST00000636228 CYP4F11Q9HBI6 524 aa17.67■□□□□ 0.42
CLN3-246ENST00000636228 CNTN3Q9P232 1028 aa17.67■□□□□ 0.42
CLN3-246ENST00000636228 FBXL5Q9UKA1 691 aa17.67■□□□□ 0.42
CLN3-246ENST00000636228 KCNH3Q9ULD8 1083 aa17.67■□□□□ 0.42
CLN3-246ENST00000636228 DOCK8Q8NF50 2099 aa17.67■□□□□ 0.42
CLN3-246ENST00000636228 MTCL1Q9Y4B5 1905 aaKnown RBP17.66■□□□□ 0.42
CLN3-246ENST00000636228 FAM170BA6NMN3 283 aa17.66■□□□□ 0.42
CLN3-246ENST00000636228 TBC1D4O60343 1298 aa17.66■□□□□ 0.42
CLN3-246ENST00000636228 LMNAP02545 664 aaKnown RBP17.66■□□□□ 0.42
CLN3-246ENST00000636228 LRG1P02750 347 aa17.66■□□□□ 0.42
CLN3-246ENST00000636228 CENPBP07199 599 aaPredicted RBP17.66■□□□□ 0.42
CLN3-246ENST00000636228 PTPN2P17706 415 aa17.66■□□□□ 0.42
CLN3-246ENST00000636228 MRPL58Q14197 206 aaKnown RBP17.66■□□□□ 0.42
CLN3-246ENST00000636228 UBXN2BQ14CS0 331 aa17.66■□□□□ 0.42
CLN3-246ENST00000636228 C8orf34Q49A92 452 aa17.66■□□□□ 0.42
CLN3-246ENST00000636228 TANGO2Q6ICL3 276 aa17.66■□□□□ 0.42
CLN3-246ENST00000636228 MAML2Q8IZL2 1156 aaPredicted RBP17.66■□□□□ 0.42
CLN3-246ENST00000636228 TMEM161BQ8NDZ6 487 aa17.66■□□□□ 0.42
CLN3-246ENST00000636228 NTPCRQ9BSD7 190 aaKnown RBP17.66■□□□□ 0.42
CLN3-246ENST00000636228 TUBGCP4Q9UGJ1 667 aa17.66■□□□□ 0.42
CLN3-246ENST00000636228 VPS13AQ96RL7 3174 aa17.66■□□□□ 0.42
CLN3-246ENST00000636228 VWA8A3KMH1 1905 aa17.65■□□□□ 0.42
CLN3-246ENST00000636228 ARHGEF37A1IGU5 675 aa17.65■□□□□ 0.42
CLN3-246ENST00000636228 VWA3AA6NCI4 1184 aa17.65■□□□□ 0.42
CLN3-246ENST00000636228 PLS3P13797 630 aa17.65■□□□□ 0.42
CLN3-246ENST00000636228 GUCY2CP25092 1073 aa17.65■□□□□ 0.42
CLN3-246ENST00000636228 RPL9P32969 192 aaKnown RBP17.65■□□□□ 0.42
CLN3-246ENST00000636228 MCM4P33991 863 aa17.65■□□□□ 0.42
CLN3-246ENST00000636228 STRN3Q13033 797 aa17.65■□□□□ 0.42
CLN3-246ENST00000636228 CTXN3Q4LDR2 81 aa17.65■□□□□ 0.42
CLN3-246ENST00000636228 HS6ST3Q8IZP7 471 aa17.65■□□□□ 0.42
CLN3-246ENST00000636228 SPIRE2Q8WWL2 714 aa17.65■□□□□ 0.42
CLN3-246ENST00000636228 TBC1D32Q96NH3 1257 aa17.65■□□□□ 0.42
CLN3-246ENST00000636228 HAPLN2Q9GZV7 340 aa17.65■□□□□ 0.42
CLN3-246ENST00000636228 C17orf75Q9HAS0 396 aa17.65■□□□□ 0.42
CLN3-246ENST00000636228 DOCK6Q96HP0 2047 aa17.65■□□□□ 0.42
CLN3-246ENST00000636228 PTPRZ1P23471 2315 aaPredicted RBP17.64■□□□□ 0.41
CLN3-246ENST00000636228 H7C4K7 107 aa17.64■□□□□ 0.41
CLN3-246ENST00000636228 SYN3O14994 580 aa17.64■□□□□ 0.41
CLN3-246ENST00000636228 TOM1L1O75674 476 aa17.64■□□□□ 0.41
CLN3-246ENST00000636228 PLA2G4BP0C869 781 aa17.64■□□□□ 0.41
CLN3-246ENST00000636228 CXCL8P10145 99 aa17.64■□□□□ 0.41
CLN3-246ENST00000636228 MAPTP10636 758 aaKnown RBP17.64■□□□□ 0.41
CLN3-246ENST00000636228 ATF2P15336 505 aa17.64■□□□□ 0.41
CLN3-246ENST00000636228 CCR2P41597 374 aa17.64■□□□□ 0.41
CLN3-246ENST00000636228 MATR3P43243 847 aaKnown RBP eCLIP17.64■□□□□ 0.41
CLN3-246ENST00000636228 SLC12A3P55017 1021 aa17.64■□□□□ 0.41
CLN3-246ENST00000636228 ATP2C1P98194 919 aaPredicted RBP17.64■□□□□ 0.41
CLN3-246ENST00000636228 GRM2Q14416 872 aa17.64■□□□□ 0.41
CLN3-246ENST00000636228 NOLC1Q14978 699 aaKnown RBP eCLIP17.64■□□□□ 0.41
CLN3-246ENST00000636228 RTL10Q7L3V2 364 aa17.64■□□□□ 0.41
CLN3-246ENST00000636228 SYT2Q8N9I0 419 aaPredicted RBP17.64■□□□□ 0.41
CLN3-246ENST00000636228 DDX12PQ92771 950 aa17.64■□□□□ 0.41
CLN3-246ENST00000636228 SUSD3Q96L08 255 aa17.64■□□□□ 0.41
CLN3-246ENST00000636228 DDX23Q9BUQ8 820 aaKnown RBP17.64■□□□□ 0.41
CLN3-246ENST00000636228 SPATA6Q9NWH7 488 aaPredicted RBP17.64■□□□□ 0.41
CLN3-246ENST00000636228 GDE1Q9NZC3 331 aa17.64■□□□□ 0.41
CLN3-246ENST00000636228 DAXXQ9UER7 740 aaPredicted RBP17.64■□□□□ 0.41
CLN3-246ENST00000636228 TIMM13Q9Y5L4 95 aaPredicted RBP17.64■□□□□ 0.41
CLN3-246ENST00000636228 INSL5Q9Y5Q6 135 aa17.64■□□□□ 0.41
CLN3-246ENST00000636228 CLDN3O15551 220 aa17.63■□□□□ 0.41
CLN3-246ENST00000636228 ECI2O75521 394 aa17.63■□□□□ 0.41
CLN3-246ENST00000636228 GJA1P17302 382 aa17.63■□□□□ 0.41
CLN3-246ENST00000636228 TNFSF9P41273 254 aa17.63■□□□□ 0.41
CLN3-246ENST00000636228 ID4P47928 161 aa17.63■□□□□ 0.41
CLN3-246ENST00000636228 SMTNP53814 917 aa17.63■□□□□ 0.41
CLN3-246ENST00000636228 PFKPQ01813 784 aa17.63■□□□□ 0.41
CLN3-246ENST00000636228 PRKCQQ04759 706 aa17.63■□□□□ 0.41
CLN3-246ENST00000636228 ADCY1Q08828 1119 aa17.63■□□□□ 0.41
CLN3-246ENST00000636228 RILPL1Q5EBL4 403 aa17.63■□□□□ 0.41
CLN3-246ENST00000636228 ARSHQ5FYA8 562 aa17.63■□□□□ 0.41
CLN3-246ENST00000636228 PRSS36Q5K4E3 855 aa17.63■□□□□ 0.41
CLN3-246ENST00000636228 HYIQ5T013 277 aa17.63■□□□□ 0.41
CLN3-246ENST00000636228 RNF19BQ6ZMZ0 732 aa17.63■□□□□ 0.41
CLN3-246ENST00000636228 TPRG1Q6ZUI0 275 aa17.63■□□□□ 0.41
CLN3-246ENST00000636228 TCEAL8Q8IYN2 117 aa17.63■□□□□ 0.41
CLN3-246ENST00000636228 ZSWIM3Q96MP5 696 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms