RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 ZNF496Q96IT1 587 aaPredicted RBP1.56□□□□□ -2.16
SMARCB1-209ENST00000635578 MRPL4Q9BYD3 311 aaKnown RBP1.56□□□□□ -2.16
SMARCB1-209ENST00000635578 MS4A5Q9H3V2 200 aa1.56□□□□□ -2.16
SMARCB1-209ENST00000635578 KANSL2Q9H9L4 492 aa1.56□□□□□ -2.16
SMARCB1-209ENST00000635578 NCOA5Q9HCD5 579 aaKnown RBP1.56□□□□□ -2.16
SMARCB1-209ENST00000635578 TMEM74BQ9NUR3 256 aa1.56□□□□□ -2.16
SMARCB1-209ENST00000635578 IFT57Q9NWB7 429 aa1.56□□□□□ -2.16
SMARCB1-209ENST00000635578 ELOVL5Q9NYP7 299 aa1.56□□□□□ -2.16
SMARCB1-209ENST00000635578 WWOXQ9NZC7 414 aa1.56□□□□□ -2.16
SMARCB1-209ENST00000635578 FLRT1Q9NZU1 646 aa1.56□□□□□ -2.16
SMARCB1-209ENST00000635578 B4GALT6Q9UBX8 382 aa1.56□□□□□ -2.16
SMARCB1-209ENST00000635578 EVLQ9UI08 416 aaPredicted RBP1.56□□□□□ -2.16
SMARCB1-209ENST00000635578 ADAM21Q9UKJ8 722 aa1.56□□□□□ -2.16
SMARCB1-209ENST00000635578 TMA7Q9Y2S6 64 aaKnown RBP1.56□□□□□ -2.16
SMARCB1-209ENST00000635578 CD2APQ9Y5K6 639 aa1.56□□□□□ -2.16
SMARCB1-209ENST00000635578 LRRIQ1Q96JM4 1722 aa1.56□□□□□ -2.16
SMARCB1-209ENST00000635578 AOX1Q06278 1338 aa1.56□□□□□ -2.16
SMARCB1-209ENST00000635578 PNPLA7Q6ZV29 1317 aa1.56□□□□□ -2.16
SMARCB1-209ENST00000635578 CUX2O14529 1486 aa1.56□□□□□ -2.16
SMARCB1-209ENST00000635578 BAZ1BQ9UIG0 1483 aaKnown RBP1.56□□□□□ -2.16
SMARCB1-209ENST00000635578 TARBP1Q13395 1621 aaKnown RBP1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 ABCA5Q8WWZ7 1642 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 SUPT6HQ7KZ85 1726 aaKnown RBP1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 IGKV2D-30A0A075B6S6 120 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 CCDC151A5D8V7 595 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 CBX4O00257 560 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 WNT10BO00744 389 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 PPEF2O14830 753 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 PLD2O14939 933 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 INSIG1O15503 277 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 PJA2O43164 708 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 KCNQ2O43526 872 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 KPNA6O60684 536 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 GAS7O60861 476 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 GASTP01350 101 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 CD1AP06126 327 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 CHRM2P08172 466 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 JMJD7P0C870 316 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 RAP2AP10114 183 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 ATP2A2P16615 1042 aaKnown RBP1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 WT1P19544 449 aaPredicted RBP1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 CTSSP25774 331 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 CNGA1P29973 690 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 GRIA3P42263 894 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 GPR15P49685 360 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 PABPC4Q13310 644 aaKnown RBP eCLIP1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 SQSTM1Q13501 440 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 FAM153CQ494X1 144 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 C19orf54Q5BKX5 351 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 GPR158Q5T848 1215 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 CREB3L3Q68CJ9 461 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 ZNF529Q6P280 563 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 ZNF66Q6ZN08 573 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 C16orf86Q6ZW13 317 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 NOP9Q86U38 636 aaKnown RBP1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 DHX37Q8IY37 1157 aaKnown RBP1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 SNX33Q8WV41 574 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 LEO1Q8WVC0 666 aaPredicted RBP1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 STON2Q8WXE9 905 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 TMEM125Q96AQ2 219 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 MARS2Q96GW9 593 aaKnown RBP1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 RNPC3Q96LT9 517 aaKnown RBP1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 CLUHP3Q96NS8 147 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 HAPLN3Q96S86 360 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 MRI1Q9BV20 369 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 QTRT1Q9BXR0 403 aaKnown RBP1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 SPRTNQ9H040 489 aaPredicted RBP1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 VPS33BQ9H267 617 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 PRDM12Q9H4Q4 367 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 EBF3Q9H4W6 596 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 PADI4Q9UM07 663 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 BTBD3Q9Y2F9 522 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 SIK3Q9Y2K2 1263 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 TOP2AP11388 1531 aaKnown RBP1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 URB2Q14146 1524 aaKnown RBP1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 ADAMTS12P58397 1594 aa1.55□□□□□ -2.16
SMARCB1-209ENST00000635578 SIGLEC1Q9BZZ2 1709 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 TLDC2A0PJX2 215 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 ADM5C9JUS6 153 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 IGSF3O75054 1194 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 RAB11FIP3O75154 756 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 DNAJC8O75937 253 aaPredicted RBP1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 POMCP01189 267 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 ASLP04424 464 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 CYP2D6P10635 497 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 MYCLP1P12525 358 aaPredicted RBP1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 ALOX15P16050 662 aaPredicted RBP1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 ATP5JP18859 108 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 SDSP20132 328 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 GCSHP23434 173 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 ADSLP30566 484 aaPredicted RBP1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 CRHR1P34998 444 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 MMP13P45452 471 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 SCNN1BP51168 640 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 IL2P60568 153 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 MEF2AQ02078 507 aaPredicted RBP1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 TFF2Q03403 129 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 TRIM25Q14258 630 aaKnown RBP1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 LRRC32Q14392 662 aa1.54□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms