RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 GJB7Q6PEY0 223 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 CATSPERGQ6ZRH7 1159 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 NUDT18Q6ZVK8 323 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 RNF10Q8N5U6 811 aaKnown RBP9.78□□□□□ -0.84
GGA3-223ENST00000621870 C1orf54Q8WWF1 131 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 AGAP3Q96P47 875 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 TINF2Q9BSI4 451 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 TRIM62Q9BVG3 475 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 COLEC11Q9BWP8 271 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 VTA1Q9NP79 307 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 TMEM39AQ9NV64 488 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 BFARQ9NZS9 450 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 PTPRZ1P23471 2315 aaPredicted RBP9.78□□□□□ -0.84
GGA3-223ENST00000621870 IRF1P10914 325 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 OAZ1P54368 228 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 GABPB1Q06547 395 aaPredicted RBP9.78□□□□□ -0.84
GGA3-223ENST00000621870 GIT2Q14161 759 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 RAB44Q7Z6P3 723 aaPredicted RBP9.78□□□□□ -0.84
GGA3-223ENST00000621870 REPS2Q8NFH8 660 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 CDC26Q8NHZ8 85 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 PLEKHA5Q9HAU0 1116 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 CACYBPQ9HB71 228 aaKnown RBP9.78□□□□□ -0.84
GGA3-223ENST00000621870 HDAC6Q9UBN7 1215 aa9.78□□□□□ -0.84
GGA3-223ENST00000621870 PRRC2BQ5JSZ5 2229 aaKnown RBP9.77□□□□□ -0.84
GGA3-223ENST00000621870 CNTRLQ7Z7A1 2325 aa9.77□□□□□ -0.84
GGA3-223ENST00000621870 ESYT3A0FGR9 886 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 RASGRF2O14827 1237 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 RTN2O75298 545 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 POMCP01189 267 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 THP07101 528 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 FAM200BP0CF97 657 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 SKIP12755 728 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 BRD2P25440 801 aaKnown RBP9.77□□□□□ -0.85
GGA3-223ENST00000621870 PPARGP37231 505 aaPredicted RBP9.77□□□□□ -0.85
GGA3-223ENST00000621870 SULT1E1P49888 294 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 MIB1Q86YT6 1006 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 PPFIBP2Q8ND30 876 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 HVCN1Q96D96 273 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 KLRG1Q96E93 195 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 MCEEQ96PE7 176 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 POP1Q99575 1024 aaKnown RBP9.77□□□□□ -0.85
GGA3-223ENST00000621870 MTG1Q9BT17 334 aaPredicted RBP9.77□□□□□ -0.85
GGA3-223ENST00000621870 AGXT2Q9BYV1 514 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 SENP6Q9GZR1 1112 aaPredicted RBP9.77□□□□□ -0.85
GGA3-223ENST00000621870 TAF1DQ9H5J8 278 aaPredicted RBP9.77□□□□□ -0.85
GGA3-223ENST00000621870 NMRK2Q9NPI5 230 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 DYRK4Q9NR20 520 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 DPP3Q9NY33 737 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 G3BP2Q9UN86 482 aaKnown RBP9.77□□□□□ -0.85
GGA3-223ENST00000621870 MYOM1P52179 1685 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 A0A1B0GTH6 734 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 CCDC160A6NGH7 325 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 ZBTB39O15060 712 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 SLC26A4O43511 780 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 ARL4CP56559 192 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 PRAMEP78395 509 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 DEUP1Q05D60 604 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 GPS1Q13098 491 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 SLC18A3Q16572 532 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 MPZL3Q6UWV2 235 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 BCAS4Q8TDM0 211 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 MED15Q96RN5 788 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 WDR35Q9P2L0 1181 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 CASTOR2A6NHX0 329 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 YDJCA8MPS7 323 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 NKRFO15226 690 aaKnown RBP eCLIP9.77□□□□□ -0.85
GGA3-223ENST00000621870 CKMP06732 381 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 LAMTOR4Q0VGL1 99 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 SHROOM1Q2M3G4 852 aaPredicted RBP9.77□□□□□ -0.85
GGA3-223ENST00000621870 C2CD6Q53TS8 623 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 ACOT1Q86TX2 421 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 ENGASEQ8NFI3 743 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 DEPDC1BQ8WUY9 529 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 PARD6BQ9BYG5 372 aa9.77□□□□□ -0.85
GGA3-223ENST00000621870 ARHGAP42A6NI28 874 aa9.76□□□□□ -0.85
GGA3-223ENST00000621870 VGLL3A8MV65 326 aa9.76□□□□□ -0.85
GGA3-223ENST00000621870 PODXLO00592 558 aa9.76□□□□□ -0.85
GGA3-223ENST00000621870 ATMINO43313 823 aaPredicted RBP9.76□□□□□ -0.85
GGA3-223ENST00000621870 NCAM1P13591 858 aa9.76□□□□□ -0.85
GGA3-223ENST00000621870 SERPINB6P35237 376 aa9.76□□□□□ -0.85
GGA3-223ENST00000621870 NUMBP49757 651 aa9.76□□□□□ -0.85
GGA3-223ENST00000621870 C10orf120Q5SQS8 335 aa9.76□□□□□ -0.85
GGA3-223ENST00000621870 SYCP2LQ5T4T6 812 aa9.76□□□□□ -0.85
GGA3-223ENST00000621870 CHSY1Q86X52 802 aa9.76□□□□□ -0.85
GGA3-223ENST00000621870 SLC7A14Q8TBB6 771 aa9.76□□□□□ -0.85
GGA3-223ENST00000621870 DHX38Q92620 1227 aaKnown RBP9.76□□□□□ -0.85
GGA3-223ENST00000621870 TMEM117Q9H0C3 514 aa9.76□□□□□ -0.85
GGA3-223ENST00000621870 KBTBD4Q9NVX7 518 aa9.76□□□□□ -0.85
GGA3-223ENST00000621870 TIMM13Q9Y5L4 95 aaPredicted RBP9.76□□□□□ -0.85
GGA3-223ENST00000621870 ZNF541Q9H0D2 1346 aa9.76□□□□□ -0.85
GGA3-223ENST00000621870 LRG1P02750 347 aa9.76□□□□□ -0.85
GGA3-223ENST00000621870 CXCL8P10145 99 aa9.76□□□□□ -0.85
GGA3-223ENST00000621870 MYBL1P10243 752 aa9.76□□□□□ -0.85
GGA3-223ENST00000621870 PNPLA4P41247 253 aa9.76□□□□□ -0.85
GGA3-223ENST00000621870 KLK7P49862 253 aa9.76□□□□□ -0.85
GGA3-223ENST00000621870 ST8SIA6P61647 398 aa9.76□□□□□ -0.85
GGA3-223ENST00000621870 MKRN4PQ13434 485 aaPredicted RBP9.76□□□□□ -0.85
GGA3-223ENST00000621870 TAF2Q6P1X5 1199 aa9.76□□□□□ -0.85
GGA3-223ENST00000621870 DDX53Q86TM3 631 aaKnown RBP9.76□□□□□ -0.85
GGA3-223ENST00000621870 VSIG10LQ86VR7 867 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms