RNA–Protein interactions for RNA: ENST00000621396.4

CBWD3-216, Transcript of COBW domain containing 3, humanhuman

TSL 2

Gene CBWD3, Length 2,437 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBWD3-216ENST00000621396 PAK2Q13177 524 aa17.14■□□□□ 0.33
CBWD3-216ENST00000621396 RPAINQ86UA6 219 aa17.14■□□□□ 0.33
CBWD3-216ENST00000621396 IRX2Q9BZI1 471 aaPredicted RBP17.14■□□□□ 0.33
CBWD3-216ENST00000621396 AIPL1Q9NZN9 384 aa17.14■□□□□ 0.33
CBWD3-216ENST00000621396 SIX4Q9UIU6 781 aa17.14■□□□□ 0.33
CBWD3-216ENST00000621396 FBXL5Q9UKA1 691 aa17.14■□□□□ 0.33
CBWD3-216ENST00000621396 PCDHB2Q9Y5E7 798 aa17.14■□□□□ 0.33
CBWD3-216ENST00000621396 TRIP11Q15643 1979 aa17.14■□□□□ 0.33
CBWD3-216ENST00000621396 ZNF500O60304 480 aaPredicted RBP17.13■□□□□ 0.33
CBWD3-216ENST00000621396 NOP14P78316 857 aaKnown RBP17.13■□□□□ 0.33
CBWD3-216ENST00000621396 TRAF7Q6Q0C0 670 aa17.13■□□□□ 0.33
CBWD3-216ENST00000621396 SCARA5Q6ZMJ2 495 aa17.13■□□□□ 0.33
CBWD3-216ENST00000621396 ZNF571Q7Z3V5 609 aaPredicted RBP17.13■□□□□ 0.33
CBWD3-216ENST00000621396 ANKRD36BP1Q96IX9 119 aa17.13■□□□□ 0.33
CBWD3-216ENST00000621396 GOLGA2P5Q9HBQ8 144 aa17.13■□□□□ 0.33
CBWD3-216ENST00000621396 TRIM10Q9UDY6 481 aa17.13■□□□□ 0.33
CBWD3-216ENST00000621396 TUBGCP4Q9UGJ1 667 aa17.13■□□□□ 0.33
CBWD3-216ENST00000621396 AXLP30530 894 aa17.13■□□□□ 0.33
CBWD3-216ENST00000621396 SOX5P35711 763 aa17.13■□□□□ 0.33
CBWD3-216ENST00000621396 TRPC3Q13507 836 aa17.13■□□□□ 0.33
CBWD3-216ENST00000621396 TMEM132DQ14C87 1099 aa17.13■□□□□ 0.33
CBWD3-216ENST00000621396 PCBP1Q15365 356 aaKnown RBP eCLIP17.13■□□□□ 0.33
CBWD3-216ENST00000621396 WDR44Q5JSH3 913 aa17.13■□□□□ 0.33
CBWD3-216ENST00000621396 C1orf112Q9NSG2 853 aa17.13■□□□□ 0.33
CBWD3-216ENST00000621396 NXF1Q9UBU9 619 aaKnown RBP17.13■□□□□ 0.33
CBWD3-216ENST00000621396 ANK1P16157 1881 aa17.13■□□□□ 0.33
CBWD3-216ENST00000621396 PPEF2O14830 753 aa17.12■□□□□ 0.33
CBWD3-216ENST00000621396 GPR182O15218 404 aa17.12■□□□□ 0.33
CBWD3-216ENST00000621396 CYP26A1O43174 497 aa17.12■□□□□ 0.33
CBWD3-216ENST00000621396 AKR1B10O60218 316 aa17.12■□□□□ 0.33
CBWD3-216ENST00000621396 IL18RAPO95256 599 aa17.12■□□□□ 0.33
CBWD3-216ENST00000621396 TNNC2P02585 160 aa17.12■□□□□ 0.33
CBWD3-216ENST00000621396 STAT1P42224 750 aa17.12■□□□□ 0.33
CBWD3-216ENST00000621396 KIF11P52732 1056 aa17.12■□□□□ 0.33
CBWD3-216ENST00000621396 YARSP54577 528 aaKnown RBP17.12■□□□□ 0.33
CBWD3-216ENST00000621396 PTPN11Q06124 597 aaPredicted RBP17.12■□□□□ 0.33
CBWD3-216ENST00000621396 REXO1L1PQ8IX06 675 aa17.12■□□□□ 0.33
CBWD3-216ENST00000621396 FAM105AQ9NUU6 356 aa17.12■□□□□ 0.33
CBWD3-216ENST00000621396 RCCD1A6NED2 376 aa17.12■□□□□ 0.33
CBWD3-216ENST00000621396 SERPING1P05155 500 aa17.12■□□□□ 0.33
CBWD3-216ENST00000621396 POLR2BP30876 1174 aaKnown RBP17.12■□□□□ 0.33
CBWD3-216ENST00000621396 SLC47A2Q86VL8 602 aa17.12■□□□□ 0.33
CBWD3-216ENST00000621396 RABGGTAQ92696 567 aa17.12■□□□□ 0.33
CBWD3-216ENST00000621396 SNX27Q96L92 541 aa17.12■□□□□ 0.33
CBWD3-216ENST00000621396 ADAM2Q99965 735 aa17.12■□□□□ 0.33
CBWD3-216ENST00000621396 ASB7Q9H672 318 aa17.12■□□□□ 0.33
CBWD3-216ENST00000621396 ERVK-5Q9HDB9 667 aa17.12■□□□□ 0.33
CBWD3-216ENST00000621396 POLIQ9UNA4 740 aa17.12■□□□□ 0.33
CBWD3-216ENST00000621396 A0A087X0T9 212 aa17.11■□□□□ 0.33
CBWD3-216ENST00000621396 WEE2P0C1S8 567 aa17.11■□□□□ 0.33
CBWD3-216ENST00000621396 FAM228BP0C875 321 aa17.11■□□□□ 0.33
CBWD3-216ENST00000621396 KRT5P13647 590 aa17.11■□□□□ 0.33
CBWD3-216ENST00000621396 ZSCAN20P17040 1043 aaPredicted RBP17.11■□□□□ 0.33
CBWD3-216ENST00000621396 CD58P19256 250 aa17.11■□□□□ 0.33
CBWD3-216ENST00000621396 IGFBP6P24592 240 aaPredicted RBP17.11■□□□□ 0.33
CBWD3-216ENST00000621396 SSTR3P32745 418 aaPredicted RBP17.11■□□□□ 0.33
CBWD3-216ENST00000621396 WDR72Q3MJ13 1102 aa17.11■□□□□ 0.33
CBWD3-216ENST00000621396 ZNF394Q53GI3 561 aa17.11■□□□□ 0.33
CBWD3-216ENST00000621396 SLC20A1Q8WUM9 679 aa17.11■□□□□ 0.33
CBWD3-216ENST00000621396 SCLYQ96I15 445 aa17.11■□□□□ 0.33
CBWD3-216ENST00000621396 PPP1R12CQ9BZL4 782 aa17.11■□□□□ 0.33
CBWD3-216ENST00000621396 XYLT2Q9H1B5 865 aa17.11■□□□□ 0.33
CBWD3-216ENST00000621396 DUSP10Q9Y6W6 482 aa17.11■□□□□ 0.33
CBWD3-216ENST00000621396 CCDC175P0C221 793 aa17.11■□□□□ 0.33
CBWD3-216ENST00000621396 RAP1GAPP47736 663 aa17.11■□□□□ 0.33
CBWD3-216ENST00000621396 MFAP3P55082 362 aa17.11■□□□□ 0.33
CBWD3-216ENST00000621396 CCL23P55773 120 aa17.11■□□□□ 0.33
CBWD3-216ENST00000621396 ENPEPQ07075 957 aa17.11■□□□□ 0.33
CBWD3-216ENST00000621396 SURF1Q15526 300 aa17.11■□□□□ 0.33
CBWD3-216ENST00000621396 TRIM60Q495X7 471 aa17.11■□□□□ 0.33
CBWD3-216ENST00000621396 TAF3Q5VWG9 929 aa17.11■□□□□ 0.33
CBWD3-216ENST00000621396 SLC39A5Q6ZMH5 540 aa17.11■□□□□ 0.33
CBWD3-216ENST00000621396 CXorf38Q8TB03 319 aa17.11■□□□□ 0.33
CBWD3-216ENST00000621396 IFIH1Q9BYX4 1025 aaKnown RBP17.11■□□□□ 0.33
CBWD3-216ENST00000621396 NUCKS1Q9H1E3 243 aaKnown RBP17.11■□□□□ 0.33
CBWD3-216ENST00000621396 DPP3Q9NY33 737 aa17.11■□□□□ 0.33
CBWD3-216ENST00000621396 AGAP1Q9UPQ3 857 aa17.11■□□□□ 0.33
CBWD3-216ENST00000621396 CDH23Q9H251 3354 aa17.11■□□□□ 0.33
CBWD3-216ENST00000621396 CITO14578 2027 aa17.11■□□□□ 0.33
CBWD3-216ENST00000621396 SMIM28A0A1B0GU29 152 aa17.1■□□□□ 0.33
CBWD3-216ENST00000621396 ASS1P00966 412 aaKnown RBP17.1■□□□□ 0.33
CBWD3-216ENST00000621396 CLCN1P35523 988 aa17.1■□□□□ 0.33
CBWD3-216ENST00000621396 MLH1P40692 756 aa17.1■□□□□ 0.33
CBWD3-216ENST00000621396 CTCFP49711 727 aaPredicted RBP17.1■□□□□ 0.33
CBWD3-216ENST00000621396 CDH8P55286 799 aa17.1■□□□□ 0.33
CBWD3-216ENST00000621396 ASTE1Q2TB18 679 aaPredicted RBP17.1■□□□□ 0.33
CBWD3-216ENST00000621396 ZNF699Q32M78 642 aa17.1■□□□□ 0.33
CBWD3-216ENST00000621396 ALKAL1Q6UXT8 129 aa17.1■□□□□ 0.33
CBWD3-216ENST00000621396 PALB2Q86YC2 1186 aa17.1■□□□□ 0.33
CBWD3-216ENST00000621396 SYN2Q92777 582 aaPredicted RBP17.1■□□□□ 0.33
CBWD3-216ENST00000621396 PAWRQ96IZ0 340 aaKnown RBP17.1■□□□□ 0.33
CBWD3-216ENST00000621396 CRISPLD2Q9H0B8 497 aa17.1■□□□□ 0.33
CBWD3-216ENST00000621396 SEPT11Q9NVA2 429 aaKnown RBP17.1■□□□□ 0.33
CBWD3-216ENST00000621396 TMCO5BA8MYB1 307 aa17.1■□□□□ 0.33
CBWD3-216ENST00000621396 OFD1O75665 1012 aa17.1■□□□□ 0.33
CBWD3-216ENST00000621396 CD4P01730 458 aa17.1■□□□□ 0.33
CBWD3-216ENST00000621396 CDK17Q00537 523 aa17.1■□□□□ 0.33
CBWD3-216ENST00000621396 SOX4Q06945 474 aaPredicted RBP17.1■□□□□ 0.33
CBWD3-216ENST00000621396 HSP90AA2PQ14568 343 aaPredicted RBP17.1■□□□□ 0.33
CBWD3-216ENST00000621396 GPNMBQ14956 572 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms