RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 SLF2Q8IX21 1173 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 ZNF444Q8N0Y2 327 aaPredicted RBP11.5□□□□□ -0.57
UPF3A-212ENST00000619079 ZNF384Q8TF68 577 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 NAP1L4Q99733 375 aaKnown RBP11.5□□□□□ -0.57
UPF3A-212ENST00000619079 TMEM47Q9BQJ4 181 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 BTBD10Q9BSF8 475 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 ZCWPW1Q9H0M4 648 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 ASIC3Q9UHC3 531 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 CIDEBQ9UHD4 219 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 AJAP1Q9UKB5 411 aaPredicted RBP11.5□□□□□ -0.57
UPF3A-212ENST00000619079 ANGPTL2Q9UKU9 493 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 COG5Q9UP83 839 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 SMAPO00193 183 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 AKAP3O75969 853 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 TROVE2P10155 538 aaKnown RBP eCLIP11.49□□□□□ -0.57
UPF3A-212ENST00000619079 CYP11B2P19099 503 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 RFX1P22670 979 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 WDR4P57081 412 aaKnown RBP11.49□□□□□ -0.57
UPF3A-212ENST00000619079 KRT17Q04695 432 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 SFSWAPQ12872 951 aaKnown RBP11.49□□□□□ -0.57
UPF3A-212ENST00000619079 MAP7Q14244 749 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 C12orf60Q5U649 245 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 HS2ST1Q7LGA3 356 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 RELL1Q8IUW5 271 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 CCNJLQ8IV13 435 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 BBOF1Q8ND07 529 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.49□□□□□ -0.57
UPF3A-212ENST00000619079 GRK7Q8WTQ7 553 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 KRT35Q92764 455 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 MCUR1Q96AQ8 359 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 TRAIPQ9BWF2 469 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 ZNF287Q9HBT7 754 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 ADARB2Q9NS39 739 aaKnown RBP11.49□□□□□ -0.57
UPF3A-212ENST00000619079 STX8Q9UNK0 236 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 GAS8O95995 478 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 NR3C1P04150 777 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 ABHD2P08910 425 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 CRKP46108 304 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 GSTO1P78417 241 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 MYBPC3Q14896 1274 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 DRAP1Q14919 205 aaPredicted RBP11.49□□□□□ -0.57
UPF3A-212ENST00000619079 ECM1Q16610 540 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 KYNUQ16719 465 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 RNF207Q6ZRF8 634 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 NLRP9Q7RTR0 991 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 CLNKQ7Z7G1 428 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 NRG4Q8WWG1 115 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 ASCC2Q9H1I8 757 aaPredicted RBP11.49□□□□□ -0.57
UPF3A-212ENST00000619079 SEPT11Q9NVA2 429 aaKnown RBP11.49□□□□□ -0.57
UPF3A-212ENST00000619079 NINJ2Q9NZG7 142 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 PCDHA12Q9UN75 941 aa11.49□□□□□ -0.57
UPF3A-212ENST00000619079 UMODL1Q5DID0 1318 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 SORBS3O60504 671 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 LYNP07948 512 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 GOLGA8HP0CJ92 632 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 CDK7P50613 346 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 LSAMPQ13449 338 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 PTK6Q13882 451 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 BMT2Q1RMZ1 405 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 LIN52Q52LA3 116 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 ACBD5Q5T8D3 534 aaPredicted RBP11.48□□□□□ -0.57
UPF3A-212ENST00000619079 AADACL2Q6P093 401 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 GJB7Q6PEY0 223 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 ZDHHC14Q8IZN3 488 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 ST13P4Q8IZP2 240 aaPredicted RBP11.48□□□□□ -0.57
UPF3A-212ENST00000619079 CYP4X1Q8N118 509 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 NME8Q8N427 588 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 VTI1AQ96AJ9 217 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 CADM1Q9BY67 442 aaKnown RBP11.48□□□□□ -0.57
UPF3A-212ENST00000619079 FOXP3Q9BZS1 431 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 ZHX3Q9H4I2 956 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 SUDS3Q9H7L9 328 aaPredicted RBP11.48□□□□□ -0.57
UPF3A-212ENST00000619079 TMEM260Q9NX78 707 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 EURLQ9NYK6 297 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 TBK1Q9UHD2 729 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 DDX25Q9UHL0 483 aaKnown RBP11.48□□□□□ -0.57
UPF3A-212ENST00000619079 SERPINA10Q9UK55 444 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 DNAJC12Q9UKB3 198 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 KIAA1024Q9UPX6 916 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 CLEC11AQ9Y240 323 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 FRMPD4Q14CM0 1322 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 E9PMD0 336 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 GYG2O15488 501 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 TBX10O75333 385 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 KRT36O76013 467 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 MTA2O94776 668 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 EGFRP00533 1210 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 LDHCP07864 332 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 ATF2P15336 505 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 DESP17661 470 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 GPC5P78333 572 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 KIF22Q14807 665 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 ACSBG2Q5FVE4 666 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 DSTYKQ6XUX3 929 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 VPS52Q8N1B4 723 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 TRPM4Q8TD43 1214 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 IWS1Q96ST2 819 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 MIPEPQ99797 713 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 DNAAF2Q9NVR5 837 aaKnown RBP11.48□□□□□ -0.57
UPF3A-212ENST00000619079 GALNT8Q9NY28 637 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms