RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 KRBA2Q6ZNG9 492 aa21.02■□□□□ 0.96
UPF1-212ENST00000601689 GOLGA5Q8TBA6 731 aa21.02■□□□□ 0.96
UPF1-212ENST00000601689 ADAMTS19Q8TE59 1207 aa21.02■□□□□ 0.96
UPF1-212ENST00000601689 CACTINQ8WUQ7 758 aaKnown RBP21.02■□□□□ 0.96
UPF1-212ENST00000601689 UHRF1Q96T88 793 aaPredicted RBP21.02■□□□□ 0.96
UPF1-212ENST00000601689 FAM213AQ9BRX8 229 aa21.02■□□□□ 0.96
UPF1-212ENST00000601689 VN1R3Q9BXE9 311 aa21.02■□□□□ 0.96
UPF1-212ENST00000601689 CXCL16Q9H2A7 254 aa21.02■□□□□ 0.96
UPF1-212ENST00000601689 GOLGA2P5Q9HBQ8 144 aa21.02■□□□□ 0.96
UPF1-212ENST00000601689 SLC39A2Q9NP94 309 aa21.02■□□□□ 0.96
UPF1-212ENST00000601689 FNIP2Q9P278 1114 aa21.02■□□□□ 0.96
UPF1-212ENST00000601689 CACNG4Q9UBN1 327 aa21.02■□□□□ 0.96
UPF1-212ENST00000601689 EXTL3O43909 919 aa21.01■□□□□ 0.95
UPF1-212ENST00000601689 GLUD1P00367 558 aa21.01■□□□□ 0.95
UPF1-212ENST00000601689 C1RP00736 705 aa21.01■□□□□ 0.95
UPF1-212ENST00000601689 MCM4P33991 863 aa21.01■□□□□ 0.95
UPF1-212ENST00000601689 DLX2Q07687 328 aaPredicted RBP21.01■□□□□ 0.95
UPF1-212ENST00000601689 SURF1Q15526 300 aa21.01■□□□□ 0.95
UPF1-212ENST00000601689 TAS1R1Q7RTX1 841 aa21.01■□□□□ 0.95
UPF1-212ENST00000601689 GRAMD1CQ8IYS0 662 aa21.01■□□□□ 0.95
UPF1-212ENST00000601689 GPD1LQ8N335 351 aa21.01■□□□□ 0.95
UPF1-212ENST00000601689 POP1Q99575 1024 aaKnown RBP21.01■□□□□ 0.95
UPF1-212ENST00000601689 RXFP1Q9HBX9 757 aa21.01■□□□□ 0.95
UPF1-212ENST00000601689 C2CD2Q9Y426 696 aa21.01■□□□□ 0.95
UPF1-212ENST00000601689 F8W810 466 aa21■□□□□ 0.95
UPF1-212ENST00000601689 MBTPS2O43462 519 aa21■□□□□ 0.95
UPF1-212ENST00000601689 FAM189A1O60320 539 aa21■□□□□ 0.95
UPF1-212ENST00000601689 GLP2RO95838 553 aa21■□□□□ 0.95
UPF1-212ENST00000601689 RPN1P04843 607 aaKnown RBP21■□□□□ 0.95
UPF1-212ENST00000601689 ADRB2P07550 413 aa21■□□□□ 0.95
UPF1-212ENST00000601689 CASP1P29466 404 aa21■□□□□ 0.95
UPF1-212ENST00000601689 LRPAP1P30533 357 aa21■□□□□ 0.95
UPF1-212ENST00000601689 ITIH3Q06033 890 aa21■□□□□ 0.95
UPF1-212ENST00000601689 SPAG1Q07617 926 aa21■□□□□ 0.95
UPF1-212ENST00000601689 PSMD5Q16401 504 aa21■□□□□ 0.95
UPF1-212ENST00000601689 KMT5BQ4FZB7 885 aa21■□□□□ 0.95
UPF1-212ENST00000601689 ANKS3Q6ZW76 656 aa21■□□□□ 0.95
UPF1-212ENST00000601689 APPL2Q8NEU8 664 aa21■□□□□ 0.95
UPF1-212ENST00000601689 HPS3Q969F9 1004 aa21■□□□□ 0.95
UPF1-212ENST00000601689 C18orf25Q96B23 403 aaPredicted RBP21■□□□□ 0.95
UPF1-212ENST00000601689 MSLNLQ96KJ4 702 aa21■□□□□ 0.95
UPF1-212ENST00000601689 PCIF1Q9H4Z3 704 aa21■□□□□ 0.95
UPF1-212ENST00000601689 RBAKQ9NYW8 714 aaPredicted RBP21■□□□□ 0.95
UPF1-212ENST00000601689 CLEC1BQ9P126 229 aa21■□□□□ 0.95
UPF1-212ENST00000601689 PRKAG3Q9UGI9 489 aa21■□□□□ 0.95
UPF1-212ENST00000601689 ZNF233A6NK53 670 aa20.99■□□□□ 0.95
UPF1-212ENST00000601689 TISP43B9A030 160 aa20.99■□□□□ 0.95
UPF1-212ENST00000601689 SYN3O14994 580 aa20.99■□□□□ 0.95
UPF1-212ENST00000601689 TEX28O15482 410 aa20.99■□□□□ 0.95
UPF1-212ENST00000601689 LILRB3O75022 631 aa20.99■□□□□ 0.95
UPF1-212ENST00000601689 EFEMP2O95967 443 aa20.99■□□□□ 0.95
UPF1-212ENST00000601689 ADSSP30520 456 aa20.99■□□□□ 0.95
UPF1-212ENST00000601689 SOX4Q06945 474 aaPredicted RBP20.99■□□□□ 0.95
UPF1-212ENST00000601689 KNOP1Q1ED39 458 aaKnown RBP20.99■□□□□ 0.95
UPF1-212ENST00000601689 ZBTB41Q5SVQ8 909 aa20.99■□□□□ 0.95
UPF1-212ENST00000601689 SPATA1Q5VX52 437 aa20.99■□□□□ 0.95
UPF1-212ENST00000601689 JADE1Q6IE81 842 aa20.99■□□□□ 0.95
UPF1-212ENST00000601689 EPM2AIP1Q7L775 607 aaPredicted RBP20.99■□□□□ 0.95
UPF1-212ENST00000601689 NELFCDQ8IXH7 590 aa20.99■□□□□ 0.95
UPF1-212ENST00000601689 SMRP1Q8NCR6 262 aa20.99■□□□□ 0.95
UPF1-212ENST00000601689 PIK3R5Q8WYR1 880 aa20.99■□□□□ 0.95
UPF1-212ENST00000601689 SAAL1Q96ER3 474 aa20.99■□□□□ 0.95
UPF1-212ENST00000601689 FBXL18Q96ME1 805 aa20.99■□□□□ 0.95
UPF1-212ENST00000601689 COL25A1Q9BXS0 654 aaPredicted RBP20.99■□□□□ 0.95
UPF1-212ENST00000601689 XIRP2A4UGR9 3374 aa20.99■□□□□ 0.95
UPF1-212ENST00000601689 H7C4K7 107 aa20.98■□□□□ 0.95
UPF1-212ENST00000601689 CLCN4P51793 760 aa20.98■□□□□ 0.95
UPF1-212ENST00000601689 FAM160A1Q05DH4 1040 aa20.98■□□□□ 0.95
UPF1-212ENST00000601689 EHHADHQ08426 723 aa20.98■□□□□ 0.95
UPF1-212ENST00000601689 KCNC3Q14003 757 aa20.98■□□□□ 0.95
UPF1-212ENST00000601689 SMAD2Q15796 467 aaKnown RBP20.98■□□□□ 0.95
UPF1-212ENST00000601689 ZBTB6Q15916 424 aa20.98■□□□□ 0.95
UPF1-212ENST00000601689 DSTYKQ6XUX3 929 aa20.98■□□□□ 0.95
UPF1-212ENST00000601689 HDAC7Q8WUI4 952 aa20.98■□□□□ 0.95
UPF1-212ENST00000601689 SCFD1Q8WVM8 642 aa20.98■□□□□ 0.95
UPF1-212ENST00000601689 RIPOR3Q96MK2 946 aa20.98■□□□□ 0.95
UPF1-212ENST00000601689 NECTIN4Q96NY8 510 aa20.98■□□□□ 0.95
UPF1-212ENST00000601689 CBWD1Q9BRT8 395 aa20.98■□□□□ 0.95
UPF1-212ENST00000601689 FGFBP2Q9BYJ0 223 aa20.98■□□□□ 0.95
UPF1-212ENST00000601689 PLEKHA4Q9H4M7 779 aa20.98■□□□□ 0.95
UPF1-212ENST00000601689 SFXN1Q9H9B4 322 aa20.98■□□□□ 0.95
UPF1-212ENST00000601689 RMND1Q9NWS8 449 aa20.98■□□□□ 0.95
UPF1-212ENST00000601689 TUBGCP4Q9UGJ1 667 aa20.98■□□□□ 0.95
UPF1-212ENST00000601689 SMC2O95347 1197 aa20.97■□□□□ 0.95
UPF1-212ENST00000601689 IL9P15248 144 aa20.97■□□□□ 0.95
UPF1-212ENST00000601689 FGFR3P22607 806 aa20.97■□□□□ 0.95
UPF1-212ENST00000601689 BMT2Q1RMZ1 405 aa20.97■□□□□ 0.95
UPF1-212ENST00000601689 RTP2Q5QGT7 225 aa20.97■□□□□ 0.95
UPF1-212ENST00000601689 ATAT1Q5SQI0 421 aa20.97■□□□□ 0.95
UPF1-212ENST00000601689 USP37Q86T82 979 aa20.97■□□□□ 0.95
UPF1-212ENST00000601689 BRSK2Q8IWQ3 736 aa20.97■□□□□ 0.95
UPF1-212ENST00000601689 SLC22A17Q8WUG5 538 aa20.97■□□□□ 0.95
UPF1-212ENST00000601689 B3GALT6Q96L58 329 aa20.97■□□□□ 0.95
UPF1-212ENST00000601689 GTPBP4Q9BZE4 634 aaKnown RBP20.97■□□□□ 0.95
UPF1-212ENST00000601689 GOLPH3LQ9H4A5 285 aa20.97■□□□□ 0.95
UPF1-212ENST00000601689 HSPBP1Q9NZL4 362 aa20.97■□□□□ 0.95
UPF1-212ENST00000601689 MTCL1Q9Y4B5 1905 aaKnown RBP20.97■□□□□ 0.95
UPF1-212ENST00000601689 SPTBN5Q9NRC6 3674 aaKnown RBP20.97■□□□□ 0.95
UPF1-212ENST00000601689 ANK1P16157 1881 aa20.96■□□□□ 0.95
UPF1-212ENST00000601689 GOLGA8IPA6NC78 632 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms