RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	AXL	P30530	894 aa		12.6	□□□□□ -0.39
VRK3-223	ENST00000601341	GTF2H1	P32780	548 aa		12.6	□□□□□ -0.39
VRK3-223	ENST00000601341	DLG4	P78352	724 aa		12.6	□□□□□ -0.39
VRK3-223	ENST00000601341	PSMD6	Q15008	389 aa		12.6	□□□□□ -0.39
VRK3-223	ENST00000601341	SLC18A3	Q16572	532 aa		12.6	□□□□□ -0.39
VRK3-223	ENST00000601341	KYAT1	Q16773	422 aa		12.6	□□□□□ -0.39
VRK3-223	ENST00000601341	FMNL3	Q8IVF7	1028 aa		12.6	□□□□□ -0.39
VRK3-223	ENST00000601341	PLEKHO2	Q8TD55	490 aa		12.6	□□□□□ -0.39
VRK3-223	ENST00000601341	CPB2	Q96IY4	423 aa		12.6	□□□□□ -0.39
VRK3-223	ENST00000601341	FNBP1	Q96RU3	617 aa		12.6	□□□□□ -0.39
VRK3-223	ENST00000601341	ADPGK	Q9BRR6	497 aa		12.6	□□□□□ -0.39
VRK3-223	ENST00000601341	CRACR2A	Q9BSW2	395 aa		12.6	□□□□□ -0.39
VRK3-223	ENST00000601341	CDT1	Q9H211	546 aa		12.6	□□□□□ -0.39
VRK3-223	ENST00000601341	PDZD7	Q9H5P4	517 aa		12.6	□□□□□ -0.39
VRK3-223	ENST00000601341	RBAK	Q9NYW8	714 aa	Predicted RBP	12.6	□□□□□ -0.39
VRK3-223	ENST00000601341	TRPV2	Q9Y5S1	764 aa		12.6	□□□□□ -0.39
VRK3-223	ENST00000601341	CDY2A	Q9Y6F7	541 aa		12.6	□□□□□ -0.39
VRK3-223	ENST00000601341	PMM2	O15305	246 aa		12.59	□□□□□ -0.39
VRK3-223	ENST00000601341	PLEK	P08567	350 aa	Predicted RBP	12.59	□□□□□ -0.39
VRK3-223	ENST00000601341	HSPA1A	P0DMV8	641 aa	Known RBP	12.59	□□□□□ -0.39
VRK3-223	ENST00000601341	HSPA1B	P0DMV9	641 aa	Known RBP	12.59	□□□□□ -0.39
VRK3-223	ENST00000601341	DLAT	P10515	647 aa	Known RBP	12.59	□□□□□ -0.39
VRK3-223	ENST00000601341	FGFR4	P22455	802 aa		12.59	□□□□□ -0.39
VRK3-223	ENST00000601341	THPO	P40225	353 aa		12.59	□□□□□ -0.39
VRK3-223	ENST00000601341	MYL7	Q01449	175 aa		12.59	□□□□□ -0.39
VRK3-223	ENST00000601341	ZBTB41	Q5SVQ8	909 aa		12.59	□□□□□ -0.39
VRK3-223	ENST00000601341	CDR2L	Q86X02	465 aa	Predicted RBP	12.59	□□□□□ -0.39
VRK3-223	ENST00000601341	CAGE1	Q8TC20	777 aa		12.59	□□□□□ -0.39
VRK3-223	ENST00000601341	TMEM40	Q8WWA1	233 aa		12.59	□□□□□ -0.39
VRK3-223	ENST00000601341	ZNF333	Q96JL9	665 aa		12.59	□□□□□ -0.39
VRK3-223	ENST00000601341	OSBPL9	Q96SU4	736 aa		12.59	□□□□□ -0.39
VRK3-223	ENST00000601341	TRMT13	Q9NUP7	481 aa	Known RBP	12.59	□□□□□ -0.39
VRK3-223	ENST00000601341	CPSF3	Q9UKF6	684 aa	Known RBP	12.59	□□□□□ -0.39
VRK3-223	ENST00000601341	ADAM21	Q9UKJ8	722 aa		12.59	□□□□□ -0.39
VRK3-223	ENST00000601341	DUSP10	Q9Y6W6	482 aa		12.59	□□□□□ -0.39
VRK3-223	ENST00000601341	GRID2IP	A4D2P6	1211 aa		12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	LRRIQ3	A6PVS8	624 aa	Predicted RBP	12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	TULP1	O00294	542 aa	Predicted RBP	12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	CAND2	O75155	1236 aa		12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	GFPT2	O94808	682 aa		12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	HOXA11	P31270	313 aa	Predicted RBP	12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	PAFAH1B1	P43034	410 aa		12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	GCLM	P48507	274 aa		12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	CLDN10	P78369	228 aa		12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	POU5F1	Q01860	360 aa	Known RBP	12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	PPP3CA	Q08209	521 aa		12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	SURF1	Q15526	300 aa		12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	NAB2	Q15742	525 aa		12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	CBWD6	Q4V339	395 aa		12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	SEZ6	Q53EL9	994 aa		12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	CBWD3	Q5JTY5	395 aa		12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	CBWD5	Q5RIA9	395 aa		12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	C1orf220	Q5T0J3	134 aa		12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	NOTUM	Q6P988	496 aa		12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	BRSK2	Q8IWQ3	736 aa		12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	THNSL1	Q8IYQ7	743 aa		12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	COG1	Q8WTW3	980 aa		12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	WNT8B	Q93098	351 aa		12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	ARMC5	Q96C12	935 aa		12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	SENP6	Q9GZR1	1112 aa	Predicted RBP	12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	GAN	Q9H2C0	597 aa		12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	PDE11A	Q9HCR9	933 aa		12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	GCNT4	Q9P109	453 aa		12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	PCDHGC5	Q9Y5F6	944 aa		12.58	□□□□□ -0.39
VRK3-223	ENST00000601341	CAPN6	Q9Y6Q1	641 aa		12.58	□□□□□ -0.39
VRK3-223	ENST00000601341		H3BQF6	201 aa		12.58	□□□□□ -0.4
VRK3-223	ENST00000601341	POLR3G	O15318	223 aa	Predicted RBP	12.58	□□□□□ -0.4
VRK3-223	ENST00000601341	SGPL1	O95470	568 aa		12.58	□□□□□ -0.4
VRK3-223	ENST00000601341	CHRNA1	P02708	482 aa		12.58	□□□□□ -0.4
VRK3-223	ENST00000601341	TFRC	P02786	760 aa	Known RBP	12.58	□□□□□ -0.4
VRK3-223	ENST00000601341	CLTA	P09496	248 aa		12.58	□□□□□ -0.4
VRK3-223	ENST00000601341	CTSH	P09668	335 aa		12.58	□□□□□ -0.4
VRK3-223	ENST00000601341	TNNI1	P19237	187 aa		12.58	□□□□□ -0.4
VRK3-223	ENST00000601341	PON1	P27169	355 aa		12.58	□□□□□ -0.4
VRK3-223	ENST00000601341	TNFSF9	P41273	254 aa		12.58	□□□□□ -0.4
VRK3-223	ENST00000601341	PRKCI	P41743	596 aa		12.58	□□□□□ -0.4
VRK3-223	ENST00000601341	MXI1	P50539	228 aa		12.58	□□□□□ -0.4
VRK3-223	ENST00000601341	IFI16	Q16666	785 aa	Known RBP	12.58	□□□□□ -0.4
VRK3-223	ENST00000601341	DCAF4L1	Q3SXM0	396 aa		12.58	□□□□□ -0.4
VRK3-223	ENST00000601341	KRT39	Q6A163	491 aa		12.58	□□□□□ -0.4
VRK3-223	ENST00000601341	SLC27A1	Q6PCB7	646 aa		12.58	□□□□□ -0.4
VRK3-223	ENST00000601341	CCNI2	Q6ZMN8	369 aa	Predicted RBP	12.58	□□□□□ -0.4
VRK3-223	ENST00000601341	SPATA4	Q8NEY3	305 aa		12.58	□□□□□ -0.4
VRK3-223	ENST00000601341	U2AF1L4	Q8WU68	220 aa	Known RBP	12.58	□□□□□ -0.4
VRK3-223	ENST00000601341	POP1	Q99575	1024 aa	Known RBP	12.58	□□□□□ -0.4
VRK3-223	ENST00000601341	LSM14B	Q9BX40	385 aa	Known RBP	12.58	□□□□□ -0.4
VRK3-223	ENST00000601341	CRISPLD2	Q9H0B8	497 aa		12.58	□□□□□ -0.4
VRK3-223	ENST00000601341	TMEM8A	Q9HCN3	771 aa		12.58	□□□□□ -0.4
VRK3-223	ENST00000601341	MYH10	P35580	1976 aa		12.58	□□□□□ -0.4
VRK3-223	ENST00000601341	PDE2A	O00408	941 aa	Predicted RBP	12.57	□□□□□ -0.4
VRK3-223	ENST00000601341	SRGAP2	O75044	1071 aa		12.57	□□□□□ -0.4
VRK3-223	ENST00000601341	RPS6KA5	O75582	802 aa		12.57	□□□□□ -0.4
VRK3-223	ENST00000601341	STAG3L1	P0CL83	205 aa		12.57	□□□□□ -0.4
VRK3-223	ENST00000601341	SLC9A1	P19634	815 aa		12.57	□□□□□ -0.4
VRK3-223	ENST00000601341	CDK7	P50613	346 aa		12.57	□□□□□ -0.4
VRK3-223	ENST00000601341	AP3M2	P53677	418 aa		12.57	□□□□□ -0.4
VRK3-223	ENST00000601341	POLR2F	P61218	127 aa	Known RBP	12.57	□□□□□ -0.4
VRK3-223	ENST00000601341	MGAT3	Q09327	533 aa		12.57	□□□□□ -0.4
VRK3-223	ENST00000601341	CFAP221	Q4G0U5	840 aa		12.57	□□□□□ -0.4
VRK3-223	ENST00000601341	TDRD12	Q587J7	1177 aa	Known RBP	12.57	□□□□□ -0.4

Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms