RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 GATMP50440 423 aa15.5■□□□□ 0.07
UPF1-211ENST00000600868 UBASH3AP57075 661 aa15.5■□□□□ 0.07
UPF1-211ENST00000600868 HTRA4P83105 476 aaPredicted RBP15.5■□□□□ 0.07
UPF1-211ENST00000600868 DSC1Q08554 894 aa15.5■□□□□ 0.07
UPF1-211ENST00000600868 TUSC3Q13454 348 aa15.5■□□□□ 0.07
UPF1-211ENST00000600868 GSE1Q14687 1217 aa15.5■□□□□ 0.07
UPF1-211ENST00000600868 NR1I3Q14994 352 aa15.5■□□□□ 0.07
UPF1-211ENST00000600868 SHHQ15465 462 aa15.5■□□□□ 0.07
UPF1-211ENST00000600868 C9orf50Q5SZB4 431 aa15.5■□□□□ 0.07
UPF1-211ENST00000600868 HERC6Q8IVU3 1022 aa15.5■□□□□ 0.07
UPF1-211ENST00000600868 CMTR2Q8IYT2 770 aaKnown RBP15.5■□□□□ 0.07
UPF1-211ENST00000600868 C1orf127Q8N9H9 656 aa15.5■□□□□ 0.07
UPF1-211ENST00000600868 RNPC3Q96LT9 517 aaKnown RBP15.5■□□□□ 0.07
UPF1-211ENST00000600868 NAP1L5Q96NT1 182 aaPredicted RBP15.5■□□□□ 0.07
UPF1-211ENST00000600868 TUBGCP4Q9UGJ1 667 aa15.5■□□□□ 0.07
UPF1-211ENST00000600868 ITGA11Q9UKX5 1188 aa15.5■□□□□ 0.07
UPF1-211ENST00000600868 COQ4Q9Y3A0 265 aa15.5■□□□□ 0.07
UPF1-211ENST00000600868 TDRD15B5MCY1 1934 aaKnown RBP15.5■□□□□ 0.07
UPF1-211ENST00000600868 COL4A6Q14031 1691 aa15.49■□□□□ 0.07
UPF1-211ENST00000600868 PES1O00541 588 aaKnown RBP15.49■□□□□ 0.07
UPF1-211ENST00000600868 CBFA2T2O43439 604 aa15.49■□□□□ 0.07
UPF1-211ENST00000600868 LRPAP1P30533 357 aa15.49■□□□□ 0.07
UPF1-211ENST00000600868 RPL9P32969 192 aaKnown RBP15.49■□□□□ 0.07
UPF1-211ENST00000600868 MYL7Q01449 175 aa15.49■□□□□ 0.07
UPF1-211ENST00000600868 MLLT1Q03111 559 aaPredicted RBP15.49■□□□□ 0.07
UPF1-211ENST00000600868 SOX4Q06945 474 aaPredicted RBP15.49■□□□□ 0.07
UPF1-211ENST00000600868 CETN1Q12798 172 aa15.49■□□□□ 0.07
UPF1-211ENST00000600868 BIRC3Q13489 604 aa15.49■□□□□ 0.07
UPF1-211ENST00000600868 FKBP15Q5T1M5 1219 aa15.49■□□□□ 0.07
UPF1-211ENST00000600868 TMCO2Q7Z6W1 182 aaPredicted RBP15.49■□□□□ 0.07
UPF1-211ENST00000600868 LRRC43Q8N309 656 aa15.49■□□□□ 0.07
UPF1-211ENST00000600868 CXorf38Q8TB03 319 aa15.49■□□□□ 0.07
UPF1-211ENST00000600868 DDX27Q96GQ7 796 aaKnown RBP15.49■□□□□ 0.07
UPF1-211ENST00000600868 FAM84AQ96KN4 292 aa15.49■□□□□ 0.07
UPF1-211ENST00000600868 MMRN2Q9H8L6 949 aa15.49■□□□□ 0.07
UPF1-211ENST00000600868 GRPEL1Q9HAV7 217 aa15.49■□□□□ 0.07
UPF1-211ENST00000600868 IFNKQ9P0W0 207 aa15.49■□□□□ 0.07
UPF1-211ENST00000600868 SIX4Q9UIU6 781 aa15.49■□□□□ 0.07
UPF1-211ENST00000600868 CEP290O15078 2479 aa15.48■□□□□ 0.07
UPF1-211ENST00000600868 ANO9A1A5B4 782 aa15.48■□□□□ 0.07
UPF1-211ENST00000600868 TNRC18O15417 2968 aaPredicted RBP15.48■□□□□ 0.07
UPF1-211ENST00000600868 PHACTR2O75167 634 aa15.48■□□□□ 0.07
UPF1-211ENST00000600868 DDHD2O94830 711 aa15.48■□□□□ 0.07
UPF1-211ENST00000600868 VNN1O95497 513 aa15.48■□□□□ 0.07
UPF1-211ENST00000600868 TPM3P06753 285 aa15.48■□□□□ 0.07
UPF1-211ENST00000600868 GUCY2FP51841 1108 aa15.48■□□□□ 0.07
UPF1-211ENST00000600868 RBP5P82980 135 aa15.48■□□□□ 0.07
UPF1-211ENST00000600868 UBXN1Q04323 297 aa15.48■□□□□ 0.07
UPF1-211ENST00000600868 RNASELQ05823 741 aaKnown RBP15.48■□□□□ 0.07
UPF1-211ENST00000600868 NCOA4Q13772 614 aa15.48■□□□□ 0.07
UPF1-211ENST00000600868 EPC2Q52LR7 807 aa15.48■□□□□ 0.07
UPF1-211ENST00000600868 FAM117BQ6P1L5 589 aa15.48■□□□□ 0.07
UPF1-211ENST00000600868 GBP6Q6ZN66 633 aa15.48■□□□□ 0.07
UPF1-211ENST00000600868 COLGALT2Q8IYK4 626 aa15.48■□□□□ 0.07
UPF1-211ENST00000600868 FBXL13Q8NEE6 735 aa15.48■□□□□ 0.07
UPF1-211ENST00000600868 TAS1R2Q8TE23 839 aa15.48■□□□□ 0.07
UPF1-211ENST00000600868 UROC1Q96N76 676 aa15.48■□□□□ 0.07
UPF1-211ENST00000600868 FAM193BQ96PV7 902 aaPredicted RBP15.48■□□□□ 0.07
UPF1-211ENST00000600868 YME1L1Q96TA2 773 aa15.48■□□□□ 0.07
UPF1-211ENST00000600868 RAD9AQ99638 391 aa15.48■□□□□ 0.07
UPF1-211ENST00000600868 INSL6Q9Y581 213 aa15.48■□□□□ 0.07
UPF1-211ENST00000600868 PIRO00625 290 aa15.47■□□□□ 0.07
UPF1-211ENST00000600868 TEX33O43247 280 aa15.47■□□□□ 0.07
UPF1-211ENST00000600868 AP5Z1O43299 807 aa15.47■□□□□ 0.07
UPF1-211ENST00000600868 CST3P01034 146 aaPredicted RBP15.47■□□□□ 0.07
UPF1-211ENST00000600868 HLA-DRAP01903 254 aa15.47■□□□□ 0.07
UPF1-211ENST00000600868 ITGB3P05106 788 aa15.47■□□□□ 0.07
UPF1-211ENST00000600868 POLR2BP30876 1174 aaKnown RBP15.47■□□□□ 0.07
UPF1-211ENST00000600868 PLCB2Q00722 1185 aa15.47■□□□□ 0.07
UPF1-211ENST00000600868 TRPC3Q13507 836 aa15.47■□□□□ 0.07
UPF1-211ENST00000600868 BTG3Q14201 252 aaPredicted RBP15.47■□□□□ 0.07
UPF1-211ENST00000600868 EXOC3L4Q17RC7 722 aa15.47■□□□□ 0.07
UPF1-211ENST00000600868 PAN2Q504Q3 1202 aaKnown RBP15.47■□□□□ 0.07
UPF1-211ENST00000600868 C9orf57Q5W0N0 161 aa15.47■□□□□ 0.07
UPF1-211ENST00000600868 ZNF280BQ86YH2 543 aa15.47■□□□□ 0.07
UPF1-211ENST00000600868 EHBP1Q8NDI1 1231 aa15.47■□□□□ 0.07
UPF1-211ENST00000600868 ERGIC2Q96RQ1 377 aa15.47■□□□□ 0.07
UPF1-211ENST00000600868 TMEM175Q9BSA9 504 aa15.47■□□□□ 0.07
UPF1-211ENST00000600868 ZBED2Q9BTP6 218 aa15.47■□□□□ 0.07
UPF1-211ENST00000600868 TRIM5Q9C035 493 aa15.47■□□□□ 0.07
UPF1-211ENST00000600868 XPO4Q9C0E2 1151 aaKnown RBP15.47■□□□□ 0.07
UPF1-211ENST00000600868 NRDE2Q9H7Z3 1164 aa15.47■□□□□ 0.07
UPF1-211ENST00000600868 GOLGA2P5Q9HBQ8 144 aa15.47■□□□□ 0.07
UPF1-211ENST00000600868 RAB20Q9NX57 234 aa15.47■□□□□ 0.07
UPF1-211ENST00000600868 CARNS1A5YM72 827 aa15.46■□□□□ 0.07
UPF1-211ENST00000600868 B4GALT3O60512 393 aa15.46■□□□□ 0.07
UPF1-211ENST00000600868 STAU1O95793 577 aaKnown RBP15.46■□□□□ 0.07
UPF1-211ENST00000600868 KRT19P08727 400 aa15.46■□□□□ 0.07
UPF1-211ENST00000600868 ATICP31939 592 aa15.46■□□□□ 0.07
UPF1-211ENST00000600868 PIK3CAP42336 1068 aa15.46■□□□□ 0.07
UPF1-211ENST00000600868 MRE11P49959 708 aa15.46■□□□□ 0.07
UPF1-211ENST00000600868 CLCNKBP51801 687 aa15.46■□□□□ 0.07
UPF1-211ENST00000600868 KCNMA1Q12791 1236 aa15.46■□□□□ 0.07
UPF1-211ENST00000600868 UPP1Q16831 310 aa15.46■□□□□ 0.07
UPF1-211ENST00000600868 SGSM1Q2NKQ1 1148 aa15.46■□□□□ 0.07
UPF1-211ENST00000600868 TMEM130Q8N3G9 435 aa15.46■□□□□ 0.07
UPF1-211ENST00000600868 LRRC52Q8N7C0 313 aa15.46■□□□□ 0.07
UPF1-211ENST00000600868 LMO3Q8TAP4 145 aa15.46■□□□□ 0.07
UPF1-211ENST00000600868 SP7Q8TDD2 431 aaPredicted RBP15.46■□□□□ 0.07
UPF1-211ENST00000600868 SEMA4DQ92854 862 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms