RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 BACE2Q9Y5Z0 518 aa19.23■□□□□ 0.67
SHKBP1-223ENST00000600552 MYH15Q9Y2K3 1946 aa19.23■□□□□ 0.67
SHKBP1-223ENST00000600552 PROB1E7EW31 1015 aa19.22■□□□□ 0.67
SHKBP1-223ENST00000600552 LRRN2O75325 713 aa19.22■□□□□ 0.67
SHKBP1-223ENST00000600552 LRG1P02750 347 aa19.22■□□□□ 0.67
SHKBP1-223ENST00000600552 PLS3P13797 630 aa19.22■□□□□ 0.67
SHKBP1-223ENST00000600552 HOXA9P31269 272 aa19.22■□□□□ 0.67
SHKBP1-223ENST00000600552 ATP2C1P98194 919 aaPredicted RBP19.22■□□□□ 0.67
SHKBP1-223ENST00000600552 ROR1Q01973 937 aa19.22■□□□□ 0.67
SHKBP1-223ENST00000600552 NOLC1Q14978 699 aaKnown RBP eCLIP19.22■□□□□ 0.67
SHKBP1-223ENST00000600552 MTSS1LQ765P7 747 aa19.22■□□□□ 0.67
SHKBP1-223ENST00000600552 CORO1BQ9BR76 489 aa19.22■□□□□ 0.67
SHKBP1-223ENST00000600552 CYP4F11Q9HBI6 524 aa19.22■□□□□ 0.67
SHKBP1-223ENST00000600552 H7C4K7 107 aa19.21■□□□□ 0.67
SHKBP1-223ENST00000600552 RHOP08100 348 aa19.21■□□□□ 0.67
SHKBP1-223ENST00000600552 KCNE1P15382 129 aa19.21■□□□□ 0.67
SHKBP1-223ENST00000600552 GUCY2CP25092 1073 aa19.21■□□□□ 0.67
SHKBP1-223ENST00000600552 CTXN3Q4LDR2 81 aa19.21■□□□□ 0.67
SHKBP1-223ENST00000600552 XKR4Q5GH76 650 aa19.21■□□□□ 0.67
SHKBP1-223ENST00000600552 ADSSL1Q8N142 457 aa19.21■□□□□ 0.67
SHKBP1-223ENST00000600552 TIPINQ9BVW5 301 aa19.21■□□□□ 0.67
SHKBP1-223ENST00000600552 ZHX3Q9H4I2 956 aa19.21■□□□□ 0.67
SHKBP1-223ENST00000600552 C17orf75Q9HAS0 396 aa19.21■□□□□ 0.67
SHKBP1-223ENST00000600552 SLC2A4RGQ9NR83 387 aa19.21■□□□□ 0.67
SHKBP1-223ENST00000600552 TUBGCP4Q9UGJ1 667 aa19.21■□□□□ 0.67
SHKBP1-223ENST00000600552 SMC3Q9UQE7 1217 aa19.21■□□□□ 0.67
SHKBP1-223ENST00000600552 R4GN57 208 aa19.21■□□□□ 0.67
SHKBP1-223ENST00000600552 RIF1Q5UIP0 2472 aaKnown RBP19.2■□□□□ 0.66
SHKBP1-223ENST00000600552 WDR27A2RRH5 827 aa19.2■□□□□ 0.66
SHKBP1-223ENST00000600552 TULP1O00294 542 aaPredicted RBP19.2■□□□□ 0.66
SHKBP1-223ENST00000600552 ABLIM1O14639 778 aa19.2■□□□□ 0.66
SHKBP1-223ENST00000600552 CLDN3O15551 220 aa19.2■□□□□ 0.66
SHKBP1-223ENST00000600552 TOM1L1O75674 476 aa19.2■□□□□ 0.66
SHKBP1-223ENST00000600552 CD2BP2O95400 341 aaKnown RBP19.2■□□□□ 0.66
SHKBP1-223ENST00000600552 MAPTP10636 758 aaKnown RBP19.2■□□□□ 0.66
SHKBP1-223ENST00000600552 PTPN2P17706 415 aa19.2■□□□□ 0.66
SHKBP1-223ENST00000600552 PROZP22891 400 aa19.2■□□□□ 0.66
SHKBP1-223ENST00000600552 MARCKSP29966 332 aaPredicted RBP19.2■□□□□ 0.66
SHKBP1-223ENST00000600552 RPL9P32969 192 aaKnown RBP19.2■□□□□ 0.66
SHKBP1-223ENST00000600552 UBXN2BQ14CS0 331 aa19.2■□□□□ 0.66
SHKBP1-223ENST00000600552 SLC10A6Q3KNW5 377 aa19.2■□□□□ 0.66
SHKBP1-223ENST00000600552 NPAS3Q8IXF0 933 aa19.2■□□□□ 0.66
SHKBP1-223ENST00000600552 SYT2Q8N9I0 419 aaPredicted RBP19.2■□□□□ 0.66
SHKBP1-223ENST00000600552 TMEM161BQ8NDZ6 487 aa19.2■□□□□ 0.66
SHKBP1-223ENST00000600552 RASSF8Q8NHQ8 419 aa19.2■□□□□ 0.66
SHKBP1-223ENST00000600552 ZNF461Q8TAF7 563 aa19.2■□□□□ 0.66
SHKBP1-223ENST00000600552 SPIRE2Q8WWL2 714 aa19.2■□□□□ 0.66
SHKBP1-223ENST00000600552 SHDQ96IW2 340 aa19.2■□□□□ 0.66
SHKBP1-223ENST00000600552 TBC1D32Q96NH3 1257 aa19.2■□□□□ 0.66
SHKBP1-223ENST00000600552 CNTN3Q9P232 1028 aa19.2■□□□□ 0.66
SHKBP1-223ENST00000600552 FBXL5Q9UKA1 691 aa19.2■□□□□ 0.66
SHKBP1-223ENST00000600552 NOTCH4Q99466 2003 aa19.2■□□□□ 0.66
SHKBP1-223ENST00000600552 USP34Q70CQ2 3546 aa19.19■□□□□ 0.66
SHKBP1-223ENST00000600552 MEFVO15553 781 aaPredicted RBP19.19■□□□□ 0.66
SHKBP1-223ENST00000600552 SEC24AO95486 1093 aa19.19■□□□□ 0.66
SHKBP1-223ENST00000600552 KRT18P05783 430 aaKnown RBP19.19■□□□□ 0.66
SHKBP1-223ENST00000600552 CXCL8P10145 99 aa19.19■□□□□ 0.66
SHKBP1-223ENST00000600552 CEBPBP17676 345 aa19.19■□□□□ 0.66
SHKBP1-223ENST00000600552 CD72P21854 359 aa19.19■□□□□ 0.66
SHKBP1-223ENST00000600552 SLC12A3P55017 1021 aa19.19■□□□□ 0.66
SHKBP1-223ENST00000600552 SLC5A9Q2M3M2 681 aa19.19■□□□□ 0.66
SHKBP1-223ENST00000600552 SLC44A4Q53GD3 710 aa19.19■□□□□ 0.66
SHKBP1-223ENST00000600552 PHLDB3Q6NSJ2 640 aa19.19■□□□□ 0.66
SHKBP1-223ENST00000600552 GPBP1Q86WP2 473 aa19.19■□□□□ 0.66
SHKBP1-223ENST00000600552 FAM212AQ96EL1 285 aa19.19■□□□□ 0.66
SHKBP1-223ENST00000600552 KCNG1Q9UIX4 513 aa19.19■□□□□ 0.66
SHKBP1-223ENST00000600552 KCNH3Q9ULD8 1083 aa19.19■□□□□ 0.66
SHKBP1-223ENST00000600552 TIMM13Q9Y5L4 95 aaPredicted RBP19.19■□□□□ 0.66
SHKBP1-223ENST00000600552 COL4A3Q01955 1670 aa19.18■□□□□ 0.66
SHKBP1-223ENST00000600552 SYN3O14994 580 aa19.18■□□□□ 0.66
SHKBP1-223ENST00000600552 UBA7P41226 1012 aa19.18■□□□□ 0.66
SHKBP1-223ENST00000600552 GUCY2FP51841 1108 aa19.18■□□□□ 0.66
SHKBP1-223ENST00000600552 MLF2Q15773 248 aaPredicted RBP19.18■□□□□ 0.66
SHKBP1-223ENST00000600552 HYIQ5T013 277 aa19.18■□□□□ 0.66
SHKBP1-223ENST00000600552 LARP1BQ659C4 914 aaKnown RBP19.18■□□□□ 0.66
SHKBP1-223ENST00000600552 MYCT1Q8N699 235 aa19.18■□□□□ 0.66
SHKBP1-223ENST00000600552 TCEAL4Q96EI5 215 aa19.18■□□□□ 0.66
SHKBP1-223ENST00000600552 KIF12Q96FN5 646 aa19.18■□□□□ 0.66
SHKBP1-223ENST00000600552 CALML4Q96GE6 196 aa19.18■□□□□ 0.66
SHKBP1-223ENST00000600552 NTPCRQ9BSD7 190 aaKnown RBP19.18■□□□□ 0.66
SHKBP1-223ENST00000600552 PLA2G2FQ9BZM2 168 aa19.18■□□□□ 0.66
SHKBP1-223ENST00000600552 UPF2Q9HAU5 1272 aaKnown RBP19.18■□□□□ 0.66
SHKBP1-223ENST00000600552 FAM186AA6NE01 2351 aa19.18■□□□□ 0.66
SHKBP1-223ENST00000600552 ABLIM3O94929 683 aa19.17■□□□□ 0.66
SHKBP1-223ENST00000600552 FAM13AO94988 1023 aa19.17■□□□□ 0.66
SHKBP1-223ENST00000600552 CPB1P15086 417 aa19.17■□□□□ 0.66
SHKBP1-223ENST00000600552 TNFSF9P41273 254 aa19.17■□□□□ 0.66
SHKBP1-223ENST00000600552 LIG4P49917 911 aa19.17■□□□□ 0.66
SHKBP1-223ENST00000600552 ADCY1Q08828 1119 aa19.17■□□□□ 0.66
SHKBP1-223ENST00000600552 ARSHQ5FYA8 562 aa19.17■□□□□ 0.66
SHKBP1-223ENST00000600552 SLC8B1Q6J4K2 584 aa19.17■□□□□ 0.66
SHKBP1-223ENST00000600552 ZNF280DQ6N043 979 aa19.17■□□□□ 0.66
SHKBP1-223ENST00000600552 HAUS6Q7Z4H7 955 aa19.17■□□□□ 0.66
SHKBP1-223ENST00000600552 HS6ST3Q8IZP7 471 aa19.17■□□□□ 0.66
SHKBP1-223ENST00000600552 APPL2Q8NEU8 664 aa19.17■□□□□ 0.66
SHKBP1-223ENST00000600552 PJA1Q8NG27 643 aa19.17■□□□□ 0.66
SHKBP1-223ENST00000600552 DDX12PQ92771 950 aa19.17■□□□□ 0.66
SHKBP1-223ENST00000600552 SUSD3Q96L08 255 aa19.17■□□□□ 0.66
SHKBP1-223ENST00000600552 HAPLN2Q9GZV7 340 aa19.17■□□□□ 0.66
SHKBP1-223ENST00000600552 LARSQ9P2J5 1176 aaKnown RBP19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 1252.5 ms