RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 KLHL40Q2TBA0 621 aa19.73■□□□□ 0.75
LIG1-216ENST00000598938 ADHFE1Q8IWW8 467 aa19.73■□□□□ 0.75
LIG1-216ENST00000598938 SLC39A11Q8N1S5 342 aa19.73■□□□□ 0.75
LIG1-216ENST00000598938 NOC3LQ8WTT2 800 aaKnown RBP19.73■□□□□ 0.75
LIG1-216ENST00000598938 FAM212AQ96EL1 285 aa19.73■□□□□ 0.75
LIG1-216ENST00000598938 SLC38A7Q9NVC3 462 aa19.73■□□□□ 0.75
LIG1-216ENST00000598938 DERAQ9Y315 318 aa19.73■□□□□ 0.75
LIG1-216ENST00000598938 PDCD11Q14690 1871 aaKnown RBP19.73■□□□□ 0.75
LIG1-216ENST00000598938 H3BQ06 376 aaPredicted RBP19.72■□□□□ 0.75
LIG1-216ENST00000598938 NRP1O14786 923 aa19.72■□□□□ 0.75
LIG1-216ENST00000598938 EXOC3O60645 756 aa19.72■□□□□ 0.75
LIG1-216ENST00000598938 ALDH2P05091 517 aa19.72■□□□□ 0.75
LIG1-216ENST00000598938 CCNE1P24864 410 aa19.72■□□□□ 0.75
LIG1-216ENST00000598938 PPM1AP35813 382 aa19.72■□□□□ 0.75
LIG1-216ENST00000598938 PMS1P54277 932 aaKnown RBP19.72■□□□□ 0.75
LIG1-216ENST00000598938 WNT7BP56706 349 aa19.72■□□□□ 0.75
LIG1-216ENST00000598938 LRRC63Q05C16 580 aa19.72■□□□□ 0.75
LIG1-216ENST00000598938 SOX4Q06945 474 aaPredicted RBP19.72■□□□□ 0.75
LIG1-216ENST00000598938 TCEAL5Q5H9L2 206 aa19.72■□□□□ 0.75
LIG1-216ENST00000598938 JADE1Q6IE81 842 aa19.72■□□□□ 0.75
LIG1-216ENST00000598938 ZC3H3Q8IXZ2 948 aaKnown RBP19.72■□□□□ 0.75
LIG1-216ENST00000598938 KLHL23Q8NBE8 558 aa19.72■□□□□ 0.75
LIG1-216ENST00000598938 C18orf25Q96B23 403 aaPredicted RBP19.72■□□□□ 0.75
LIG1-216ENST00000598938 KIF12Q96FN5 646 aa19.72■□□□□ 0.75
LIG1-216ENST00000598938 POP1Q99575 1024 aaKnown RBP19.72■□□□□ 0.75
LIG1-216ENST00000598938 C11orf84Q9BUA3 381 aaPredicted RBP19.72■□□□□ 0.75
LIG1-216ENST00000598938 LMAN2LQ9H0V9 348 aa19.72■□□□□ 0.75
LIG1-216ENST00000598938 SPG21Q9NZD8 308 aa19.72■□□□□ 0.75
LIG1-216ENST00000598938 ANK1P16157 1881 aa19.71■□□□□ 0.75
LIG1-216ENST00000598938 NT5C1B-RDH14C9J2C7 533 aa19.71■□□□□ 0.75
LIG1-216ENST00000598938 FGF18O76093 207 aa19.71■□□□□ 0.75
LIG1-216ENST00000598938 NR2F2P24468 414 aa19.71■□□□□ 0.75
LIG1-216ENST00000598938 OR1G1P47890 313 aa19.71■□□□□ 0.75
LIG1-216ENST00000598938 MRE11P49959 708 aa19.71■□□□□ 0.75
LIG1-216ENST00000598938 NLRP12P59046 1061 aa19.71■□□□□ 0.75
LIG1-216ENST00000598938 PLCB3Q01970 1234 aa19.71■□□□□ 0.75
LIG1-216ENST00000598938 NHLH1Q02575 133 aa19.71■□□□□ 0.75
LIG1-216ENST00000598938 SPAG1Q07617 926 aa19.71■□□□□ 0.75
LIG1-216ENST00000598938 ANKRD40Q6AI12 368 aa19.71■□□□□ 0.75
LIG1-216ENST00000598938 FOXR2Q6PJQ5 311 aa19.71■□□□□ 0.75
LIG1-216ENST00000598938 TMEM173Q86WV6 379 aaPredicted RBP19.71■□□□□ 0.75
LIG1-216ENST00000598938 MLKLQ8NB16 471 aa19.71■□□□□ 0.75
LIG1-216ENST00000598938 RDH13Q8NBN7 331 aa19.71■□□□□ 0.75
LIG1-216ENST00000598938 BCL7CQ8WUZ0 217 aaPredicted RBP19.71■□□□□ 0.75
LIG1-216ENST00000598938 UROC1Q96N76 676 aa19.71■□□□□ 0.75
LIG1-216ENST00000598938 TSG101Q99816 390 aa19.71■□□□□ 0.75
LIG1-216ENST00000598938 UBQLN1Q9UMX0 589 aaKnown RBP19.71■□□□□ 0.75
LIG1-216ENST00000598938 FAN1Q9Y2M0 1017 aa19.71■□□□□ 0.75
LIG1-216ENST00000598938 C2CD2Q9Y426 696 aa19.71■□□□□ 0.75
LIG1-216ENST00000598938 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.71■□□□□ 0.75
LIG1-216ENST00000598938 TRIP11Q15643 1979 aa19.71■□□□□ 0.75
LIG1-216ENST00000598938 TRIM49BA6NDI0 452 aa19.7■□□□□ 0.74
LIG1-216ENST00000598938 CASTOR2A6NHX0 329 aa19.7■□□□□ 0.74
LIG1-216ENST00000598938 ITGB1P05556 798 aa19.7■□□□□ 0.74
LIG1-216ENST00000598938 NFICP08651 508 aa19.7■□□□□ 0.74
LIG1-216ENST00000598938 CYP3A5P20815 502 aa19.7■□□□□ 0.74
LIG1-216ENST00000598938 RPL13P26373 211 aaKnown RBP19.7■□□□□ 0.74
LIG1-216ENST00000598938 CASP4P49662 377 aa19.7■□□□□ 0.74
LIG1-216ENST00000598938 CYP24A1Q07973 514 aa19.7■□□□□ 0.74
LIG1-216ENST00000598938 TMEM132DQ14C87 1099 aa19.7■□□□□ 0.74
LIG1-216ENST00000598938 SURF1Q15526 300 aa19.7■□□□□ 0.74
LIG1-216ENST00000598938 KLHL10Q6JEL2 608 aa19.7■□□□□ 0.74
LIG1-216ENST00000598938 CAVIN1Q6NZI2 390 aaKnown RBP19.7■□□□□ 0.74
LIG1-216ENST00000598938 NT5DC4Q86YG4 428 aa19.7■□□□□ 0.74
LIG1-216ENST00000598938 EFCAB13Q8IY85 973 aa19.7■□□□□ 0.74
LIG1-216ENST00000598938 NELFBQ8WX92 580 aa19.7■□□□□ 0.74
LIG1-216ENST00000598938 SYAP1Q96A49 352 aaPredicted RBP19.7■□□□□ 0.74
LIG1-216ENST00000598938 IGSF21Q96ID5 467 aa19.7■□□□□ 0.74
LIG1-216ENST00000598938 MFSD14AQ96MC6 490 aa19.7■□□□□ 0.74
LIG1-216ENST00000598938 PAAF1Q9BRP4 392 aa19.7■□□□□ 0.74
LIG1-216ENST00000598938 GOLGA2P5Q9HBQ8 144 aa19.7■□□□□ 0.74
LIG1-216ENST00000598938 PDE11AQ9HCR9 933 aa19.7■□□□□ 0.74
LIG1-216ENST00000598938 MARCH5Q9NX47 278 aa19.7■□□□□ 0.74
LIG1-216ENST00000598938 CACNG4Q9UBN1 327 aa19.7■□□□□ 0.74
LIG1-216ENST00000598938 TUBGCP4Q9UGJ1 667 aa19.7■□□□□ 0.74
LIG1-216ENST00000598938 CTNND2Q9UQB3 1225 aa19.7■□□□□ 0.74
LIG1-216ENST00000598938 PRG3Q9Y2Y8 225 aaPredicted RBP19.7■□□□□ 0.74
LIG1-216ENST00000598938 MAPK13O15264 365 aa19.69■□□□□ 0.74
LIG1-216ENST00000598938 XPOTO43592 962 aaKnown RBP19.69■□□□□ 0.74
LIG1-216ENST00000598938 PAK1Q13153 545 aa19.69■□□□□ 0.74
LIG1-216ENST00000598938 ADAM9Q13443 819 aa19.69■□□□□ 0.74
LIG1-216ENST00000598938 PSMD6Q15008 389 aa19.69■□□□□ 0.74
LIG1-216ENST00000598938 UPP1Q16831 310 aa19.69■□□□□ 0.74
LIG1-216ENST00000598938 CTC1Q2NKJ3 1217 aa19.69■□□□□ 0.74
LIG1-216ENST00000598938 DPCR1Q3MIW9 517 aa19.69■□□□□ 0.74
LIG1-216ENST00000598938 SPATA1Q5VX52 437 aa19.69■□□□□ 0.74
LIG1-216ENST00000598938 TTI2Q6NXR4 508 aa19.69■□□□□ 0.74
LIG1-216ENST00000598938 SPPL3Q8TCT6 385 aa19.69■□□□□ 0.74
LIG1-216ENST00000598938 COLEC11Q9BWP8 271 aa19.69■□□□□ 0.74
LIG1-216ENST00000598938 LZTS1Q9Y250 596 aa19.69■□□□□ 0.74
LIG1-216ENST00000598938 BICDL2A1A5D9 508 aa19.68■□□□□ 0.74
LIG1-216ENST00000598938 F8W810 466 aa19.68■□□□□ 0.74
LIG1-216ENST00000598938 GRM6O15303 877 aa19.68■□□□□ 0.74
LIG1-216ENST00000598938 AKAP3O75969 853 aa19.68■□□□□ 0.74
LIG1-216ENST00000598938 EFEMP2O95967 443 aa19.68■□□□□ 0.74
LIG1-216ENST00000598938 LRPAP1P30533 357 aa19.68■□□□□ 0.74
LIG1-216ENST00000598938 RPL9P32969 192 aaKnown RBP19.68■□□□□ 0.74
LIG1-216ENST00000598938 CLCNKBP51801 687 aa19.68■□□□□ 0.74
LIG1-216ENST00000598938 FKBP3Q00688 224 aaKnown RBP19.68■□□□□ 0.74
LIG1-216ENST00000598938 UBE3AQ05086 875 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms