RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, human

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIM28-210	ENST00000597618	ELMOD1	Q8N336	334 aa		11.18	□□□□□ -0.62
TRIM28-210	ENST00000597618	FAM160A2	Q8N612	972 aa	Predicted RBP	11.18	□□□□□ -0.62
TRIM28-210	ENST00000597618	TCEAL4	Q96EI5	215 aa		11.18	□□□□□ -0.62
TRIM28-210	ENST00000597618	DDX27	Q96GQ7	796 aa	Known RBP	11.18	□□□□□ -0.62
TRIM28-210	ENST00000597618	EIF2AK1	Q9BQI3	630 aa	Known RBP	11.18	□□□□□ -0.62
TRIM28-210	ENST00000597618	C2orf40	Q9H1Z8	148 aa		11.18	□□□□□ -0.62
TRIM28-210	ENST00000597618	FZD8	Q9H461	694 aa		11.18	□□□□□ -0.62
TRIM28-210	ENST00000597618	DAXX	Q9UER7	740 aa	Predicted RBP	11.18	□□□□□ -0.62
TRIM28-210	ENST00000597618	RALY	Q9UKM9	306 aa	Known RBP	11.18	□□□□□ -0.62
TRIM28-210	ENST00000597618	SNX14	Q9Y5W7	946 aa		11.18	□□□□□ -0.62
TRIM28-210	ENST00000597618	FASN	P49327	2511 aa	Known RBP	11.17	□□□□□ -0.62
TRIM28-210	ENST00000597618		K7ESF4	209 aa		11.17	□□□□□ -0.62
TRIM28-210	ENST00000597618	USO1	O60763	962 aa	Known RBP	11.17	□□□□□ -0.62
TRIM28-210	ENST00000597618	ABLIM3	O94929	683 aa		11.17	□□□□□ -0.62
TRIM28-210	ENST00000597618	ATF2	P15336	505 aa		11.17	□□□□□ -0.62
TRIM28-210	ENST00000597618	CCNE1	P24864	410 aa		11.17	□□□□□ -0.62
TRIM28-210	ENST00000597618	PSMA5	P28066	241 aa		11.17	□□□□□ -0.62
TRIM28-210	ENST00000597618	PRPF4B	Q13523	1007 aa	Known RBP	11.17	□□□□□ -0.62
TRIM28-210	ENST00000597618	GAS6	Q14393	721 aa		11.17	□□□□□ -0.62
TRIM28-210	ENST00000597618	UPP1	Q16831	310 aa		11.17	□□□□□ -0.62
TRIM28-210	ENST00000597618	IQCE	Q6IPM2	695 aa		11.17	□□□□□ -0.62
TRIM28-210	ENST00000597618	CPLX2	Q6PUV4	134 aa	Known RBP	11.17	□□□□□ -0.62
TRIM28-210	ENST00000597618	NOSTRIN	Q8IVI9	506 aa		11.17	□□□□□ -0.62
TRIM28-210	ENST00000597618	TCEAL8	Q8IYN2	117 aa		11.17	□□□□□ -0.62
TRIM28-210	ENST00000597618	C12orf50	Q8NA57	414 aa	Predicted RBP	11.17	□□□□□ -0.62
TRIM28-210	ENST00000597618	LEMD2	Q8NC56	503 aa		11.17	□□□□□ -0.62
TRIM28-210	ENST00000597618	MCPH1	Q8NEM0	835 aa		11.17	□□□□□ -0.62
TRIM28-210	ENST00000597618	CSGALNACT1	Q8TDX6	532 aa		11.17	□□□□□ -0.62
TRIM28-210	ENST00000597618	HSD17B14	Q9BPX1	270 aa		11.17	□□□□□ -0.62
TRIM28-210	ENST00000597618	CXCL16	Q9H2A7	254 aa		11.17	□□□□□ -0.62
TRIM28-210	ENST00000597618	TRPV4	Q9HBA0	871 aa		11.17	□□□□□ -0.62
TRIM28-210	ENST00000597618	CYP4F11	Q9HBI6	524 aa		11.17	□□□□□ -0.62
TRIM28-210	ENST00000597618	INSL5	Q9Y5Q6	135 aa		11.17	□□□□□ -0.62
TRIM28-210	ENST00000597618	COL4A2	P08572	1712 aa		11.17	□□□□□ -0.62
TRIM28-210	ENST00000597618	VWA8	A3KMH1	1905 aa		11.17	□□□□□ -0.62
TRIM28-210	ENST00000597618	ARNTL	O00327	626 aa		11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	CDC45	O75419	566 aa		11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	PROS1	P07225	676 aa		11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	XBP1	P17861	261 aa		11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	HOXA6	P31267	233 aa		11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	HSPA4	P34932	840 aa		11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	VIPR2	P41587	438 aa		11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	CCR2	P41597	374 aa		11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	CLCNKB	P51801	687 aa		11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	COL9A2	Q14055	689 aa	Predicted RBP	11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	MAPK6	Q16659	721 aa		11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	DCAF4L1	Q3SXM0	396 aa		11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	GLRA4	Q5JXX5	417 aa		11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	DGKK	Q5KSL6	1271 aa		11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	HEATR6	Q6AI08	1181 aa	Known RBP	11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	PIK3AP1	Q6ZUJ8	805 aa		11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	MFSD6L	Q8IWD5	586 aa		11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	YAF2	Q8IY57	180 aa		11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	E2F7	Q96AV8	911 aa		11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	LOXL4	Q96JB6	756 aa		11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	ZSWIM3	Q96MP5	696 aa		11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	AIFM3	Q96NN9	605 aa		11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	PPP1R10	Q96QC0	940 aa	Known RBP	11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	C8orf33	Q9H7E9	229 aa	Predicted RBP	11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	GPRC5C	Q9NQ84	441 aa		11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	ASAH2	Q9NR71	780 aa		11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	SH2B1	Q9NRF2	756 aa	Predicted RBP	11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	KCNJ14	Q9UNX9	436 aa		11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	GDA	Q9Y2T3	454 aa		11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	LAMA1	P25391	3075 aa		11.16	□□□□□ -0.62
TRIM28-210	ENST00000597618	TTLL13P	A6NNM8	815 aa		11.15	□□□□□ -0.62
TRIM28-210	ENST00000597618		I3L4J1	428 aa		11.15	□□□□□ -0.62
TRIM28-210	ENST00000597618	ACKR2	O00590	384 aa		11.15	□□□□□ -0.62
TRIM28-210	ENST00000597618	NRG2	O14511	850 aa	Predicted RBP	11.15	□□□□□ -0.62
TRIM28-210	ENST00000597618	TM4SF5	O14894	197 aa		11.15	□□□□□ -0.62
TRIM28-210	ENST00000597618	SYN3	O14994	580 aa		11.15	□□□□□ -0.62
TRIM28-210	ENST00000597618	PRKCB	P05771	671 aa		11.15	□□□□□ -0.62
TRIM28-210	ENST00000597618	ZNF806	P0C7X5	589 aa		11.15	□□□□□ -0.62
TRIM28-210	ENST00000597618	XRCC6	P12956	609 aa	Known RBP eCLIP	11.15	□□□□□ -0.62
TRIM28-210	ENST00000597618	KPNA1	P52294	538 aa	Predicted RBP	11.15	□□□□□ -0.62
TRIM28-210	ENST00000597618	ARPP19	P56211	112 aa		11.15	□□□□□ -0.62
TRIM28-210	ENST00000597618	SF3A2	Q15428	464 aa	Known RBP	11.15	□□□□□ -0.62
TRIM28-210	ENST00000597618	TPGS2	Q68CL5	300 aa		11.15	□□□□□ -0.62
TRIM28-210	ENST00000597618	CD300LG	Q6UXG3	332 aa		11.15	□□□□□ -0.62
TRIM28-210	ENST00000597618		Q6ZS52	159 aa		11.15	□□□□□ -0.62
TRIM28-210	ENST00000597618	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	11.15	□□□□□ -0.62
TRIM28-210	ENST00000597618	WDR5B	Q86VZ2	330 aa		11.15	□□□□□ -0.62
TRIM28-210	ENST00000597618	C3orf58	Q8NDZ4	430 aa		11.15	□□□□□ -0.62
TRIM28-210	ENST00000597618	FAM200A	Q8TCP9	573 aa		11.15	□□□□□ -0.62
TRIM28-210	ENST00000597618	PIGO	Q8TEQ8	1089 aa		11.15	□□□□□ -0.62
TRIM28-210	ENST00000597618	ZNF512	Q96ME7	567 aa	Predicted RBP	11.15	□□□□□ -0.62
TRIM28-210	ENST00000597618	GPR88	Q9GZN0	384 aa		11.15	□□□□□ -0.62
TRIM28-210	ENST00000597618	SLITRK6	Q9H5Y7	841 aa		11.15	□□□□□ -0.62
TRIM28-210	ENST00000597618	RBM12	Q9NTZ6	932 aa	Known RBP	11.15	□□□□□ -0.62
TRIM28-210	ENST00000597618	MAFF	Q9ULX9	164 aa		11.15	□□□□□ -0.62
TRIM28-210	ENST00000597618	PCDHA12	Q9UN75	941 aa		11.15	□□□□□ -0.62
TRIM28-210	ENST00000597618	PKD1L2	Q7Z442	2459 aa		11.14	□□□□□ -0.63
TRIM28-210	ENST00000597618	TICRR	Q7Z2Z1	1910 aa		11.14	□□□□□ -0.63
TRIM28-210	ENST00000597618	SLC38A8	A6NNN8	435 aa		11.14	□□□□□ -0.63
TRIM28-210	ENST00000597618	HEPACAM2	A8MVW5	462 aa		11.14	□□□□□ -0.63
TRIM28-210	ENST00000597618		H7C4K7	107 aa		11.14	□□□□□ -0.63
TRIM28-210	ENST00000597618	CHAD	O15335	359 aa		11.14	□□□□□ -0.63
TRIM28-210	ENST00000597618	CDKL5	O76039	1030 aa		11.14	□□□□□ -0.63
TRIM28-210	ENST00000597618	EPN2	O95208	641 aa		11.14	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms