RNA–Protein interactions for RNA: ENST00000594948.5

VRK3-209, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 2 BASIC

Gene VRK3, Length 1,847 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-209ENST00000594948 ITGB5P18084 799 aa14.08□□□□□ -0.15
VRK3-209ENST00000594948 YARSP54577 528 aaKnown RBP14.08□□□□□ -0.15
VRK3-209ENST00000594948 IZUMO3Q5VZ72 239 aa14.08□□□□□ -0.15
VRK3-209ENST00000594948 CC2D2BQ6DHV5 1058 aa14.08□□□□□ -0.15
VRK3-209ENST00000594948 ECHDC2Q86YB7 292 aa14.08□□□□□ -0.15
VRK3-209ENST00000594948 CBWD2Q8IUF1 395 aa14.08□□□□□ -0.15
VRK3-209ENST00000594948 RHOT1Q8IXI2 618 aa14.08□□□□□ -0.15
VRK3-209ENST00000594948 KATNAL2Q8IYT4 538 aa14.08□□□□□ -0.15
VRK3-209ENST00000594948 CYP4X1Q8N118 509 aa14.08□□□□□ -0.15
VRK3-209ENST00000594948 GDAP1Q8TB36 358 aa14.08□□□□□ -0.15
VRK3-209ENST00000594948 INPP5DQ92835 1189 aa14.08□□□□□ -0.15
VRK3-209ENST00000594948 RMDN2Q96LZ7 410 aa14.08□□□□□ -0.15
VRK3-209ENST00000594948 CFAP57Q96MR6 1250 aa14.08□□□□□ -0.15
VRK3-209ENST00000594948 DBNDD1Q9H9R9 158 aa14.08□□□□□ -0.15
VRK3-209ENST00000594948 AGO4Q9HCK5 861 aaKnown RBP14.08□□□□□ -0.15
VRK3-209ENST00000594948 ACP6Q9NPH0 428 aa14.08□□□□□ -0.15
VRK3-209ENST00000594948 FEM1BQ9UK73 627 aa14.08□□□□□ -0.15
VRK3-209ENST00000594948 PNMA3Q9UL41 463 aa14.08□□□□□ -0.15
VRK3-209ENST00000594948 TBX20Q9UMR3 447 aa14.08□□□□□ -0.15
VRK3-209ENST00000594948 RPL26L1Q9UNX3 145 aaKnown RBP14.08□□□□□ -0.15
VRK3-209ENST00000594948 BCS1LQ9Y276 419 aa14.08□□□□□ -0.15
VRK3-209ENST00000594948 L3MBTL1Q9Y468 752 aa14.08□□□□□ -0.15
VRK3-209ENST00000594948 UBIAD1Q9Y5Z9 338 aa14.08□□□□□ -0.15
VRK3-209ENST00000594948 USH1CQ9Y6N9 552 aa14.08□□□□□ -0.15
VRK3-209ENST00000594948 NFASCO94856 1347 aa14.08□□□□□ -0.15
VRK3-209ENST00000594948 E7ENQ6 273 aa14.08□□□□□ -0.16
VRK3-209ENST00000594948 ASMTLO95671 621 aa14.08□□□□□ -0.16
VRK3-209ENST00000594948 GH1P01241 217 aa14.08□□□□□ -0.16
VRK3-209ENST00000594948 ADSSP30520 456 aa14.08□□□□□ -0.16
VRK3-209ENST00000594948 ECE1P42892 770 aa14.08□□□□□ -0.16
VRK3-209ENST00000594948 POLGP54098 1239 aaPredicted RBP14.08□□□□□ -0.16
VRK3-209ENST00000594948 PEX3P56589 373 aa14.08□□□□□ -0.16
VRK3-209ENST00000594948 MGAT5Q09328 741 aa14.08□□□□□ -0.16
VRK3-209ENST00000594948 SF3A3Q12874 501 aaKnown RBP eCLIP14.08□□□□□ -0.16
VRK3-209ENST00000594948 NAA25Q14CX7 972 aa14.08□□□□□ -0.16
VRK3-209ENST00000594948 FAM182BQ5T319 152 aa14.08□□□□□ -0.16
VRK3-209ENST00000594948 TRIM72Q6ZMU5 477 aa14.08□□□□□ -0.16
VRK3-209ENST00000594948 ANKS1BQ7Z6G8 1248 aa14.08□□□□□ -0.16
VRK3-209ENST00000594948 LDHDQ86WU2 507 aa14.08□□□□□ -0.16
VRK3-209ENST00000594948 SAMD3Q8N6K7 520 aa14.08□□□□□ -0.16
VRK3-209ENST00000594948 ZSWIM2Q8NEG5 633 aa14.08□□□□□ -0.16
VRK3-209ENST00000594948 EXD1Q8NHP7 514 aa14.08□□□□□ -0.16
VRK3-209ENST00000594948 CFAP61Q8NHU2 1237 aa14.08□□□□□ -0.16
VRK3-209ENST00000594948 SH3TC2Q8TF17 1288 aa14.08□□□□□ -0.16
VRK3-209ENST00000594948 ATG4AQ8WYN0 398 aa14.08□□□□□ -0.16
VRK3-209ENST00000594948 MASTLQ96GX5 879 aa14.08□□□□□ -0.16
VRK3-209ENST00000594948 VCPIP1Q96JH7 1222 aa14.08□□□□□ -0.16
VRK3-209ENST00000594948 PITPNM3Q9BZ71 974 aa14.08□□□□□ -0.16
VRK3-209ENST00000594948 LRMDAQ9H2I8 198 aa14.08□□□□□ -0.16
VRK3-209ENST00000594948 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.08□□□□□ -0.16
VRK3-209ENST00000594948 KCNH7Q9NS40 1196 aa14.08□□□□□ -0.16
VRK3-209ENST00000594948 TBC1D22BQ9NU19 505 aa14.08□□□□□ -0.16
VRK3-209ENST00000594948 SLC5A4Q9NY91 659 aa14.08□□□□□ -0.16
VRK3-209ENST00000594948 ADAM22Q9P0K1 906 aa14.08□□□□□ -0.16
VRK3-209ENST00000594948 SMG5Q9UPR3 1016 aaKnown RBP14.08□□□□□ -0.16
VRK3-209ENST00000594948 MYPNQ86TC9 1320 aa14.08□□□□□ -0.16
VRK3-209ENST00000594948 UMODL1Q5DID0 1318 aa14.07□□□□□ -0.16
VRK3-209ENST00000594948 GOLGA8IPA6NC78 632 aa14.07□□□□□ -0.16
VRK3-209ENST00000594948 GOLGA8JA6NMD2 632 aa14.07□□□□□ -0.16
VRK3-209ENST00000594948 SLC16A4O15374 487 aa14.07□□□□□ -0.16
VRK3-209ENST00000594948 DCTN3O75935 186 aa14.07□□□□□ -0.16
VRK3-209ENST00000594948 CYP1A1P04798 512 aaPredicted RBP14.07□□□□□ -0.16
VRK3-209ENST00000594948 CETPP11597 493 aa14.07□□□□□ -0.16
VRK3-209ENST00000594948 ATP2A2P16615 1042 aaKnown RBP14.07□□□□□ -0.16
VRK3-209ENST00000594948 IBSPP21815 317 aaPredicted RBP14.07□□□□□ -0.16
VRK3-209ENST00000594948 KLRC2P26717 231 aa14.07□□□□□ -0.16
VRK3-209ENST00000594948 YWHABP31946 246 aaKnown RBP14.07□□□□□ -0.16
VRK3-209ENST00000594948 FOXN2P32314 431 aa14.07□□□□□ -0.16
VRK3-209ENST00000594948 CYP24A1Q07973 514 aa14.07□□□□□ -0.16
VRK3-209ENST00000594948 SETDB1Q15047 1291 aa14.07□□□□□ -0.16
VRK3-209ENST00000594948 CMPK2Q5EBM0 449 aa14.07□□□□□ -0.16
VRK3-209ENST00000594948 DRICH1Q6PGQ1 229 aaPredicted RBP14.07□□□□□ -0.16
VRK3-209ENST00000594948 MAEAQ7L5Y9 396 aa14.07□□□□□ -0.16
VRK3-209ENST00000594948 TRABD2AQ86V40 505 aa14.07□□□□□ -0.16
VRK3-209ENST00000594948 SRRM1Q8IYB3 904 aaKnown RBP14.07□□□□□ -0.16
VRK3-209ENST00000594948 OGFOD1Q8N543 542 aa14.07□□□□□ -0.16
VRK3-209ENST00000594948 ANKLE1Q8NAG6 615 aa14.07□□□□□ -0.16
VRK3-209ENST00000594948 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.07□□□□□ -0.16
VRK3-209ENST00000594948 DENND1AQ8TEH3 1009 aa14.07□□□□□ -0.16
VRK3-209ENST00000594948 SPIRE2Q8WWL2 714 aa14.07□□□□□ -0.16
VRK3-209ENST00000594948 CSRNP1Q96S65 589 aa14.07□□□□□ -0.16
VRK3-209ENST00000594948 HERPUD2Q9BSE4 406 aa14.07□□□□□ -0.16
VRK3-209ENST00000594948 C17orf75Q9HAS0 396 aa14.07□□□□□ -0.16
VRK3-209ENST00000594948 MAP3K20Q9NYL2 800 aaKnown RBP14.07□□□□□ -0.16
VRK3-209ENST00000594948 USP21Q9UK80 565 aa14.07□□□□□ -0.16
VRK3-209ENST00000594948 PCDHB2Q9Y5E7 798 aa14.07□□□□□ -0.16
VRK3-209ENST00000594948 SIP14410 1827 aa14.07□□□□□ -0.16
VRK3-209ENST00000594948 LUC7L3O95232 432 aaKnown RBP14.06□□□□□ -0.16
VRK3-209ENST00000594948 RRM1P23921 792 aa14.06□□□□□ -0.16
VRK3-209ENST00000594948 CETN2P41208 172 aa14.06□□□□□ -0.16
VRK3-209ENST00000594948 MAGEA4P43358 317 aa14.06□□□□□ -0.16
VRK3-209ENST00000594948 WDR4P57081 412 aaKnown RBP14.06□□□□□ -0.16
VRK3-209ENST00000594948 SPARCL1Q14515 664 aa14.06□□□□□ -0.16
VRK3-209ENST00000594948 ZKSCAN8Q15776 578 aaPredicted RBP14.06□□□□□ -0.16
VRK3-209ENST00000594948 CCDC142Q17RM4 750 aa14.06□□□□□ -0.16
VRK3-209ENST00000594948 TKFCQ3LXA3 575 aa14.06□□□□□ -0.16
VRK3-209ENST00000594948 TMEM63BQ5T3F8 832 aa14.06□□□□□ -0.16
VRK3-209ENST00000594948 LIN9Q5TKA1 542 aa14.06□□□□□ -0.16
VRK3-209ENST00000594948 PCNX4Q63HM2 1172 aa14.06□□□□□ -0.16
VRK3-209ENST00000594948 TMEM161BQ8NDZ6 487 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms