RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 SLC16A4O15374 487 aa13.67□□□□□ -0.22
UPF1-203ENST00000594504 MEFVO15553 781 aaPredicted RBP13.67□□□□□ -0.22
UPF1-203ENST00000594504 HARSP12081 509 aaKnown RBP13.67□□□□□ -0.22
UPF1-203ENST00000594504 GRM5P41594 1212 aa13.67□□□□□ -0.22
UPF1-203ENST00000594504 ARPP19P56211 112 aa13.67□□□□□ -0.22
UPF1-203ENST00000594504 MAPK7Q13164 816 aa13.67□□□□□ -0.22
UPF1-203ENST00000594504 SNW1Q13573 536 aaKnown RBP13.67□□□□□ -0.22
UPF1-203ENST00000594504 ZNF568Q3ZCX4 644 aa13.67□□□□□ -0.22
UPF1-203ENST00000594504 C1orf186Q6ZWK4 172 aa13.67□□□□□ -0.22
UPF1-203ENST00000594504 ADSSL1Q8N142 457 aa13.67□□□□□ -0.22
UPF1-203ENST00000594504 KRI1Q8N9T8 703 aaKnown RBP13.67□□□□□ -0.22
UPF1-203ENST00000594504 CALML4Q96GE6 196 aa13.67□□□□□ -0.22
UPF1-203ENST00000594504 PNMA5Q96PV4 448 aa13.67□□□□□ -0.22
UPF1-203ENST00000594504 KXD1Q9BQD3 176 aa13.67□□□□□ -0.22
UPF1-203ENST00000594504 FOXQ1Q9C009 403 aa13.67□□□□□ -0.22
UPF1-203ENST00000594504 TMEM134Q9H6X4 195 aa13.67□□□□□ -0.22
UPF1-203ENST00000594504 KMT5AQ9NQR1 393 aa13.67□□□□□ -0.22
UPF1-203ENST00000594504 ARHGEF3Q9NR81 526 aa13.67□□□□□ -0.22
UPF1-203ENST00000594504 SLC2A4RGQ9NR83 387 aa13.67□□□□□ -0.22
UPF1-203ENST00000594504 TFIP11Q9UBB9 837 aaKnown RBP13.67□□□□□ -0.22
UPF1-203ENST00000594504 SIT1Q9Y3P8 196 aa13.67□□□□□ -0.22
UPF1-203ENST00000594504 ABLIM1O14639 778 aa13.66□□□□□ -0.22
UPF1-203ENST00000594504 SPTLC2O15270 562 aa13.66□□□□□ -0.22
UPF1-203ENST00000594504 PPP6R2O75170 966 aa13.66□□□□□ -0.22
UPF1-203ENST00000594504 XYLBO75191 536 aa13.66□□□□□ -0.22
UPF1-203ENST00000594504 GLULP15104 373 aa13.66□□□□□ -0.22
UPF1-203ENST00000594504 YARSP54577 528 aaKnown RBP13.66□□□□□ -0.22
UPF1-203ENST00000594504 UVSSAQ2YD98 709 aa13.66□□□□□ -0.22
UPF1-203ENST00000594504 FOXD4L6Q3SYB3 417 aaPredicted RBP13.66□□□□□ -0.22
UPF1-203ENST00000594504 TMEM119Q4V9L6 283 aa13.66□□□□□ -0.22
UPF1-203ENST00000594504 XKR4Q5GH76 650 aa13.66□□□□□ -0.22
UPF1-203ENST00000594504 PHLDB3Q6NSJ2 640 aa13.66□□□□□ -0.22
UPF1-203ENST00000594504 PDXDC1Q6P996 788 aa13.66□□□□□ -0.22
UPF1-203ENST00000594504 FOXD4L3Q6VB84 417 aaPredicted RBP13.66□□□□□ -0.22
UPF1-203ENST00000594504 C18orf25Q96B23 403 aaPredicted RBP13.66□□□□□ -0.22
UPF1-203ENST00000594504 MCRS1Q96EZ8 462 aa13.66□□□□□ -0.22
UPF1-203ENST00000594504 TCHPQ9BT92 498 aa13.66□□□□□ -0.22
UPF1-203ENST00000594504 CCDC94Q9BW85 323 aaPredicted RBP13.66□□□□□ -0.22
UPF1-203ENST00000594504 MRPL4Q9BYD3 311 aaKnown RBP13.66□□□□□ -0.22
UPF1-203ENST00000594504 PLA2G2FQ9BZM2 168 aa13.66□□□□□ -0.22
UPF1-203ENST00000594504 CCSER1Q9C0I3 900 aa13.66□□□□□ -0.22
UPF1-203ENST00000594504 DLGAP2Q9P1A6 1054 aa13.66□□□□□ -0.22
UPF1-203ENST00000594504 DAXXQ9UER7 740 aaPredicted RBP13.66□□□□□ -0.22
UPF1-203ENST00000594504 CFAP45Q9UL16 551 aa13.66□□□□□ -0.22
UPF1-203ENST00000594504 ZDHHC9Q9Y397 364 aa13.66□□□□□ -0.22
UPF1-203ENST00000594504 MTF2Q9Y483 593 aaPredicted RBP13.66□□□□□ -0.22
UPF1-203ENST00000594504 ATP6V1DQ9Y5K8 247 aa13.66□□□□□ -0.22
UPF1-203ENST00000594504 R4GN57 208 aa13.66□□□□□ -0.22
UPF1-203ENST00000594504 PHLPP2Q6ZVD8 1323 aa13.65□□□□□ -0.22
UPF1-203ENST00000594504 NPHP3-ACAD11A0A0J9YXS1 232 aa13.65□□□□□ -0.22
UPF1-203ENST00000594504 PODXLO00592 558 aa13.65□□□□□ -0.22
UPF1-203ENST00000594504 CD72P21854 359 aa13.65□□□□□ -0.22
UPF1-203ENST00000594504 PROZP22891 400 aa13.65□□□□□ -0.22
UPF1-203ENST00000594504 HOXA9P31269 272 aa13.65□□□□□ -0.22
UPF1-203ENST00000594504 ANP32AP39687 249 aaKnown RBP13.65□□□□□ -0.22
UPF1-203ENST00000594504 TXLNAP40222 546 aa13.65□□□□□ -0.22
UPF1-203ENST00000594504 STARD6P59095 220 aa13.65□□□□□ -0.22
UPF1-203ENST00000594504 CACNB1Q02641 598 aaPredicted RBP13.65□□□□□ -0.22
UPF1-203ENST00000594504 DNM1Q05193 864 aaKnown RBP13.65□□□□□ -0.22
UPF1-203ENST00000594504 DMP1Q13316 513 aaPredicted RBP13.65□□□□□ -0.22
UPF1-203ENST00000594504 SLC5A9Q2M3M2 681 aa13.65□□□□□ -0.22
UPF1-203ENST00000594504 PABPC1LQ4VXU2 614 aaKnown RBP13.65□□□□□ -0.22
UPF1-203ENST00000594504 ANKS3Q6ZW76 656 aa13.65□□□□□ -0.22
UPF1-203ENST00000594504 RASSF8Q8NHQ8 419 aa13.65□□□□□ -0.22
UPF1-203ENST00000594504 KCNG4Q8TDN1 519 aa13.65□□□□□ -0.22
UPF1-203ENST00000594504 SNX27Q96L92 541 aa13.65□□□□□ -0.22
UPF1-203ENST00000594504 UROC1Q96N76 676 aa13.65□□□□□ -0.22
UPF1-203ENST00000594504 CLIC6Q96NY7 704 aa13.65□□□□□ -0.22
UPF1-203ENST00000594504 ACAP3Q96P50 834 aa13.65□□□□□ -0.22
UPF1-203ENST00000594504 ARHGAP28Q9P2N2 729 aa13.65□□□□□ -0.22
UPF1-203ENST00000594504 BACE2Q9Y5Z0 518 aa13.65□□□□□ -0.22
UPF1-203ENST00000594504 ZFP37Q9Y6Q3 630 aaPredicted RBP13.65□□□□□ -0.22
UPF1-203ENST00000594504 WDR27A2RRH5 827 aa13.64□□□□□ -0.23
UPF1-203ENST00000594504 NRG2O14511 850 aaPredicted RBP13.64□□□□□ -0.23
UPF1-203ENST00000594504 TRAPPC3O43617 180 aa13.64□□□□□ -0.23
UPF1-203ENST00000594504 SEC24AO95486 1093 aa13.64□□□□□ -0.23
UPF1-203ENST00000594504 RHOP08100 348 aa13.64□□□□□ -0.23
UPF1-203ENST00000594504 MCF2P10911 925 aa13.64□□□□□ -0.23
UPF1-203ENST00000594504 PLCG1P19174 1290 aa13.64□□□□□ -0.23
UPF1-203ENST00000594504 NUCB2P80303 420 aa13.64□□□□□ -0.23
UPF1-203ENST00000594504 ROR1Q01973 937 aa13.64□□□□□ -0.23
UPF1-203ENST00000594504 SPAG1Q07617 926 aa13.64□□□□□ -0.23
UPF1-203ENST00000594504 KARSQ15046 597 aaKnown RBP13.64□□□□□ -0.23
UPF1-203ENST00000594504 SLC44A4Q53GD3 710 aa13.64□□□□□ -0.23
UPF1-203ENST00000594504 VARS2Q5ST30 1063 aaKnown RBP13.64□□□□□ -0.23
UPF1-203ENST00000594504 MPZL3Q6UWV2 235 aa13.64□□□□□ -0.23
UPF1-203ENST00000594504 APBB1IPQ7Z5R6 666 aaPredicted RBP13.64□□□□□ -0.23
UPF1-203ENST00000594504 NPAS3Q8IXF0 933 aa13.64□□□□□ -0.23
UPF1-203ENST00000594504 SYT2Q8N9I0 419 aaPredicted RBP13.64□□□□□ -0.23
UPF1-203ENST00000594504 EPSTI1Q96J88 318 aa13.64□□□□□ -0.23
UPF1-203ENST00000594504 TOPORSQ9NS56 1045 aaPredicted RBP13.64□□□□□ -0.23
UPF1-203ENST00000594504 CCDC39Q9UFE4 941 aa13.64□□□□□ -0.23
UPF1-203ENST00000594504 TBC1D4O60343 1298 aa13.63□□□□□ -0.23
UPF1-203ENST00000594504 ABLIM3O94929 683 aa13.63□□□□□ -0.23
UPF1-203ENST00000594504 PLA2G4BP0C869 781 aa13.63□□□□□ -0.23
UPF1-203ENST00000594504 PTPN2P17706 415 aa13.63□□□□□ -0.23
UPF1-203ENST00000594504 ELF1P32519 619 aa13.63□□□□□ -0.23
UPF1-203ENST00000594504 DDIT3P35638 169 aa13.63□□□□□ -0.23
UPF1-203ENST00000594504 KRT85P78386 507 aa13.63□□□□□ -0.23
UPF1-203ENST00000594504 MRPL58Q14197 206 aaKnown RBP13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms