RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 PLSCR1O15162 318 aa6.26□□□□□ -1.41
SMAD4-216ENST00000593223 AP1G1O43747 822 aa6.26□□□□□ -1.41
SMAD4-216ENST00000593223 FTLP02792 175 aaPredicted RBP6.26□□□□□ -1.41
SMAD4-216ENST00000593223 AMHP03971 560 aa6.26□□□□□ -1.41
SMAD4-216ENST00000593223 C1SP09871 688 aa6.26□□□□□ -1.41
SMAD4-216ENST00000593223 HSPA6P17066 643 aa6.26□□□□□ -1.41
SMAD4-216ENST00000593223 SMARCA1P28370 1054 aa6.26□□□□□ -1.41
SMAD4-216ENST00000593223 CHN2P52757 468 aa6.26□□□□□ -1.41
SMAD4-216ENST00000593223 ZNF280AP59817 542 aaPredicted RBP6.26□□□□□ -1.41
SMAD4-216ENST00000593223 RNASE9P60153 205 aaKnown RBP6.26□□□□□ -1.41
SMAD4-216ENST00000593223 UBXN2BQ14CS0 331 aa6.26□□□□□ -1.41
SMAD4-216ENST00000593223 CSRP2Q16527 193 aa6.26□□□□□ -1.41
SMAD4-216ENST00000593223 KHDC1Q4VXA5 237 aaKnown RBP6.26□□□□□ -1.41
SMAD4-216ENST00000593223 CERS3Q8IU89 383 aa6.26□□□□□ -1.41
SMAD4-216ENST00000593223 IFI44Q8TCB0 444 aa6.26□□□□□ -1.41
SMAD4-216ENST00000593223 NSUN6Q8TEA1 469 aaKnown RBP6.26□□□□□ -1.41
SMAD4-216ENST00000593223 MVB12AQ96EY5 273 aa6.26□□□□□ -1.41
SMAD4-216ENST00000593223 DCLRE1CQ96SD1 692 aaKnown RBP6.26□□□□□ -1.41
SMAD4-216ENST00000593223 VRK1Q99986 396 aaPredicted RBP6.26□□□□□ -1.41
SMAD4-216ENST00000593223 ZNF341Q9BYN7 854 aa6.26□□□□□ -1.41
SMAD4-216ENST00000593223 METTL14Q9HCE5 456 aaKnown RBP6.26□□□□□ -1.41
SMAD4-216ENST00000593223 TRPM5Q9NZQ8 1165 aa6.26□□□□□ -1.41
SMAD4-216ENST00000593223 CALCOCO1Q9P1Z2 691 aa6.26□□□□□ -1.41
SMAD4-216ENST00000593223 KLHL42Q9P2K6 505 aa6.26□□□□□ -1.41
SMAD4-216ENST00000593223 MYRFQ9Y2G1 1151 aa6.26□□□□□ -1.41
SMAD4-216ENST00000593223 TRIM24O15164 1050 aa6.25□□□□□ -1.41
SMAD4-216ENST00000593223 GRM6O15303 877 aa6.25□□□□□ -1.41
SMAD4-216ENST00000593223 RFPL1O75677 317 aa6.25□□□□□ -1.41
SMAD4-216ENST00000593223 SCGB1D2O95969 90 aa6.25□□□□□ -1.41
SMAD4-216ENST00000593223 ITGB1P05556 798 aa6.25□□□□□ -1.41
SMAD4-216ENST00000593223 CD1AP06126 327 aa6.25□□□□□ -1.41
SMAD4-216ENST00000593223 MTHFD1P11586 935 aaKnown RBP6.25□□□□□ -1.41
SMAD4-216ENST00000593223 DSC2Q02487 901 aa6.25□□□□□ -1.41
SMAD4-216ENST00000593223 FOXE3Q13461 319 aa6.25□□□□□ -1.41
SMAD4-216ENST00000593223 TOB2Q14106 344 aaPredicted RBP6.25□□□□□ -1.41
SMAD4-216ENST00000593223 LRRC41Q15345 812 aa6.25□□□□□ -1.41
SMAD4-216ENST00000593223 NFE2Q16621 373 aaPredicted RBP6.25□□□□□ -1.41
SMAD4-216ENST00000593223 SYT12Q8IV01 421 aa6.25□□□□□ -1.41
SMAD4-216ENST00000593223 PRR18Q8N4B5 295 aa6.25□□□□□ -1.41
SMAD4-216ENST00000593223 C3orf20Q8ND61 904 aa6.25□□□□□ -1.41
SMAD4-216ENST00000593223 RGMAQ96B86 450 aa6.25□□□□□ -1.41
SMAD4-216ENST00000593223 MRGPRX4Q96LA9 322 aa6.25□□□□□ -1.41
SMAD4-216ENST00000593223 GSTO2Q9H4Y5 243 aa6.25□□□□□ -1.41
SMAD4-216ENST00000593223 NMRK2Q9NPI5 230 aa6.25□□□□□ -1.41
SMAD4-216ENST00000593223 KMT5AQ9NQR1 393 aa6.25□□□□□ -1.41
SMAD4-216ENST00000593223 FBXO34Q9NWN3 711 aa6.25□□□□□ -1.41
SMAD4-216ENST00000593223 CEP72Q9P209 647 aa6.25□□□□□ -1.41
SMAD4-216ENST00000593223 POLHQ9Y253 713 aa6.25□□□□□ -1.41
SMAD4-216ENST00000593223 POLA1P09884 1462 aaPredicted RBP6.24□□□□□ -1.41
SMAD4-216ENST00000593223 LRRC14BA6NHZ5 514 aa6.24□□□□□ -1.41
SMAD4-216ENST00000593223 SPATA31D3P0C874 917 aa6.24□□□□□ -1.41
SMAD4-216ENST00000593223 U2AF1L5P0DN76 240 aaPredicted RBP6.24□□□□□ -1.41
SMAD4-216ENST00000593223 DGCR2P98153 550 aa6.24□□□□□ -1.41
SMAD4-216ENST00000593223 U2AF1Q01081 240 aaKnown RBP eCLIP6.24□□□□□ -1.41
SMAD4-216ENST00000593223 TLE1Q04724 770 aa6.24□□□□□ -1.41
SMAD4-216ENST00000593223 ZNF267Q14586 743 aaPredicted RBP6.24□□□□□ -1.41
SMAD4-216ENST00000593223 PABPC1LQ4VXU2 614 aaKnown RBP6.24□□□□□ -1.41
SMAD4-216ENST00000593223 DACT2Q5SW24 774 aa6.24□□□□□ -1.41
SMAD4-216ENST00000593223 SPATA31D4Q6ZUB0 917 aa6.24□□□□□ -1.41
SMAD4-216ENST00000593223 CAMKK1Q8N5S9 505 aa6.24□□□□□ -1.41
SMAD4-216ENST00000593223 DCBLD1Q8N8Z6 715 aa6.24□□□□□ -1.41
SMAD4-216ENST00000593223 NLGN4YQ8NFZ3 816 aaPredicted RBP6.24□□□□□ -1.41
SMAD4-216ENST00000593223 HPS3Q969F9 1004 aa6.24□□□□□ -1.41
SMAD4-216ENST00000593223 CLIP3Q96DZ5 547 aa6.24□□□□□ -1.41
SMAD4-216ENST00000593223 PACSIN1Q9BY11 444 aa6.24□□□□□ -1.41
SMAD4-216ENST00000593223 VPS11Q9H270 941 aa6.24□□□□□ -1.41
SMAD4-216ENST00000593223 ZNF703Q9H7S9 590 aaPredicted RBP6.24□□□□□ -1.41
SMAD4-216ENST00000593223 ATP11BQ9Y2G3 1177 aa6.24□□□□□ -1.41
SMAD4-216ENST00000593223 REXO2Q9Y3B8 237 aaKnown RBP6.24□□□□□ -1.41
SMAD4-216ENST00000593223 USP15Q9Y4E8 981 aaPredicted RBP6.24□□□□□ -1.41
SMAD4-216ENST00000593223 PCDHA3Q9Y5H8 950 aa6.24□□□□□ -1.41
SMAD4-216ENST00000593223 DIRC3C9JPN6 131 aa6.23□□□□□ -1.41
SMAD4-216ENST00000593223 SLC16A6O15403 523 aa6.23□□□□□ -1.41
SMAD4-216ENST00000593223 MALP21145 153 aa6.23□□□□□ -1.41
SMAD4-216ENST00000593223 SLC6A2P23975 617 aa6.23□□□□□ -1.41
SMAD4-216ENST00000593223 FXR1P51114 621 aaKnown RBP eCLIP6.23□□□□□ -1.41
SMAD4-216ENST00000593223 KRTAP10-2P60368 255 aa6.23□□□□□ -1.41
SMAD4-216ENST00000593223 GTF2H3Q13889 308 aa6.23□□□□□ -1.41
SMAD4-216ENST00000593223 TSHZ3Q63HK5 1081 aa6.23□□□□□ -1.41
SMAD4-216ENST00000593223 DBX2Q6ZNG2 339 aa6.23□□□□□ -1.41
SMAD4-216ENST00000593223 GDF7Q7Z4P5 450 aa6.23□□□□□ -1.41
SMAD4-216ENST00000593223 ZNF276Q8N554 614 aa6.23□□□□□ -1.41
SMAD4-216ENST00000593223 FITM2Q8N6M3 262 aa6.23□□□□□ -1.41
SMAD4-216ENST00000593223 AIFM3Q96NN9 605 aa6.23□□□□□ -1.41
SMAD4-216ENST00000593223 DMRTA2Q96SC8 542 aa6.23□□□□□ -1.41
SMAD4-216ENST00000593223 SOGA1O94964 1423 aa6.23□□□□□ -1.41
SMAD4-216ENST00000593223 ABCC8Q09428 1581 aa6.23□□□□□ -1.41
SMAD4-216ENST00000593223 GRIN2BQ13224 1484 aa6.22□□□□□ -1.41
SMAD4-216ENST00000593223 SRCAPQ6ZRS2 3230 aa6.22□□□□□ -1.41
SMAD4-216ENST00000593223 CDHR4A6H8M9 788 aa6.22□□□□□ -1.41
SMAD4-216ENST00000593223 GRXCR1A8MXD5 290 aa6.22□□□□□ -1.41
SMAD4-216ENST00000593223 RPS6KA4O75676 772 aa6.22□□□□□ -1.41
SMAD4-216ENST00000593223 HAUS5O94927 633 aa6.22□□□□□ -1.41
SMAD4-216ENST00000593223 ARIH2O95376 493 aa6.22□□□□□ -1.41
SMAD4-216ENST00000593223 SBK3P0C264 359 aa6.22□□□□□ -1.41
SMAD4-216ENST00000593223 PTTG1IPP53801 180 aa6.22□□□□□ -1.41
SMAD4-216ENST00000593223 NOGQ13253 232 aa6.22□□□□□ -1.41
SMAD4-216ENST00000593223 SNAPC2Q13487 334 aa6.22□□□□□ -1.41
SMAD4-216ENST00000593223 TUBA3CQ13748 450 aa6.22□□□□□ -1.41
SMAD4-216ENST00000593223 LSM12Q3MHD2 195 aaKnown RBP6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms