RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 NAA35Q5VZE5 725 aa21.08■□□□□ 0.96
CLIP3-206ENST00000593074 OR5B17Q8NGF7 314 aa21.08■□□□□ 0.96
CLIP3-206ENST00000593074 JPH2Q9BR39 696 aaPredicted RBP21.08■□□□□ 0.96
CLIP3-206ENST00000593074 ERVK-5Q9HDB9 667 aa21.08■□□□□ 0.96
CLIP3-206ENST00000593074 MCM3APO60318 1980 aa21.08■□□□□ 0.96
CLIP3-206ENST00000593074 CYP1A1P04798 512 aaPredicted RBP21.07■□□□□ 0.96
CLIP3-206ENST00000593074 MYBL1P10243 752 aa21.07■□□□□ 0.96
CLIP3-206ENST00000593074 AP3M2P53677 418 aa21.07■□□□□ 0.96
CLIP3-206ENST00000593074 NOP14P78316 857 aaKnown RBP21.07■□□□□ 0.96
CLIP3-206ENST00000593074 MCOLN2Q8IZK6 566 aa21.07■□□□□ 0.96
CLIP3-206ENST00000593074 ABRAQ8N0Z2 381 aa21.07■□□□□ 0.96
CLIP3-206ENST00000593074 GOLGA6L1Q8N7Z2 621 aa21.07■□□□□ 0.96
CLIP3-206ENST00000593074 C2orf69Q8N8R5 385 aa21.07■□□□□ 0.96
CLIP3-206ENST00000593074 PIK3R5Q8WYR1 880 aa21.07■□□□□ 0.96
CLIP3-206ENST00000593074 TRIM11Q96F44 468 aa21.07■□□□□ 0.96
CLIP3-206ENST00000593074 BTBD6Q96KE9 485 aa21.07■□□□□ 0.96
CLIP3-206ENST00000593074 ACO2Q99798 780 aaKnown RBP21.07■□□□□ 0.96
CLIP3-206ENST00000593074 CELF4Q9BZC1 486 aaKnown RBP21.07■□□□□ 0.96
CLIP3-206ENST00000593074 SLTMQ9NWH9 1034 aaKnown RBP eCLIP21.07■□□□□ 0.96
CLIP3-206ENST00000593074 MORF4L1Q9UBU8 362 aa21.07■□□□□ 0.96
CLIP3-206ENST00000593074 ZHX1Q9UKY1 873 aaPredicted RBP21.07■□□□□ 0.96
CLIP3-206ENST00000593074 IVNS1ABPQ9Y6Y0 642 aa21.07■□□□□ 0.96
CLIP3-206ENST00000593074 ERICH4A6NGS2 130 aa21.06■□□□□ 0.96
CLIP3-206ENST00000593074 ABLIM1O14639 778 aa21.06■□□□□ 0.96
CLIP3-206ENST00000593074 HBP1O60381 514 aa21.06■□□□□ 0.96
CLIP3-206ENST00000593074 CENPCQ03188 943 aa21.06■□□□□ 0.96
CLIP3-206ENST00000593074 PPFIA1Q13136 1202 aa21.06■□□□□ 0.96
CLIP3-206ENST00000593074 WDR49Q8IV35 697 aa21.06■□□□□ 0.96
CLIP3-206ENST00000593074 ZBTB8OSQ8IWT0 167 aa21.06■□□□□ 0.96
CLIP3-206ENST00000593074 LRRC71Q8N4P6 559 aa21.06■□□□□ 0.96
CLIP3-206ENST00000593074 RNF149Q8NC42 400 aa21.06■□□□□ 0.96
CLIP3-206ENST00000593074 C2orf40Q9H1Z8 148 aa21.06■□□□□ 0.96
CLIP3-206ENST00000593074 UTP11Q9Y3A2 253 aaKnown RBP21.06■□□□□ 0.96
CLIP3-206ENST00000593074 PCDHA3Q9Y5H8 950 aa21.06■□□□□ 0.96
CLIP3-206ENST00000593074 GOLGA6CA6NDK9 693 aa21.06■□□□□ 0.96
CLIP3-206ENST00000593074 SPOPO43791 374 aa21.06■□□□□ 0.96
CLIP3-206ENST00000593074 PRKCBP05771 671 aa21.06■□□□□ 0.96
CLIP3-206ENST00000593074 GOLGA6DP0CG33 693 aa21.06■□□□□ 0.96
CLIP3-206ENST00000593074 SRGAP2CP0DJJ0 459 aa21.06■□□□□ 0.96
CLIP3-206ENST00000593074 MCL1Q07820 350 aa21.06■□□□□ 0.96
CLIP3-206ENST00000593074 LAMC2Q13753 1193 aa21.06■□□□□ 0.96
CLIP3-206ENST00000593074 NCOA4Q13772 614 aa21.06■□□□□ 0.96
CLIP3-206ENST00000593074 SEZ6Q53EL9 994 aa21.06■□□□□ 0.96
CLIP3-206ENST00000593074 CFAP58Q5T655 872 aa21.06■□□□□ 0.96
CLIP3-206ENST00000593074 AADACL2Q6P093 401 aa21.06■□□□□ 0.96
CLIP3-206ENST00000593074 DDX42Q86XP3 938 aaKnown RBP eCLIP21.06■□□□□ 0.96
CLIP3-206ENST00000593074 CD302Q8IX05 232 aa21.06■□□□□ 0.96
CLIP3-206ENST00000593074 VTA1Q9NP79 307 aa21.06■□□□□ 0.96
CLIP3-206ENST00000593074 GOLGA6AQ9NYA3 693 aa21.06■□□□□ 0.96
CLIP3-206ENST00000593074 NUB1Q9Y5A7 615 aa21.06■□□□□ 0.96
CLIP3-206ENST00000593074 HARSP12081 509 aaKnown RBP21.05■□□□□ 0.96
CLIP3-206ENST00000593074 TNFSF9P41273 254 aa21.05■□□□□ 0.96
CLIP3-206ENST00000593074 DHX34Q14147 1143 aaKnown RBP21.05■□□□□ 0.96
CLIP3-206ENST00000593074 MAPK6Q16659 721 aa21.05■□□□□ 0.96
CLIP3-206ENST00000593074 SEL1L2Q5TEA6 688 aa21.05■□□□□ 0.96
CLIP3-206ENST00000593074 TAPT1Q6NXT6 567 aa21.05■□□□□ 0.96
CLIP3-206ENST00000593074 TRIM72Q6ZMU5 477 aa21.05■□□□□ 0.96
CLIP3-206ENST00000593074 RAB17Q9H0T7 212 aa21.05■□□□□ 0.96
CLIP3-206ENST00000593074 NEUROG2Q9H2A3 272 aa21.05■□□□□ 0.96
CLIP3-206ENST00000593074 FAM114A2Q9NRY5 505 aa21.05■□□□□ 0.96
CLIP3-206ENST00000593074 FAM187AA6NFU0 413 aa21.05■□□□□ 0.96
CLIP3-206ENST00000593074 OGTO15294 1046 aa21.05■□□□□ 0.96
CLIP3-206ENST00000593074 DAPK3O43293 454 aa21.05■□□□□ 0.96
CLIP3-206ENST00000593074 PHF2O75151 1096 aa21.05■□□□□ 0.96
CLIP3-206ENST00000593074 DR1Q01658 176 aa21.05■□□□□ 0.96
CLIP3-206ENST00000593074 MON1BQ7L1V2 547 aa21.05■□□□□ 0.96
CLIP3-206ENST00000593074 ADAT2Q7Z6V5 191 aaKnown RBP21.05■□□□□ 0.96
CLIP3-206ENST00000593074 CPNE8Q86YQ8 564 aa21.05■□□□□ 0.96
CLIP3-206ENST00000593074 FAM76AQ8TAV0 307 aa21.05■□□□□ 0.96
CLIP3-206ENST00000593074 UMODL1Q5DID0 1318 aa21.04■□□□□ 0.96
CLIP3-206ENST00000593074 GH1P01241 217 aa21.04■□□□□ 0.96
CLIP3-206ENST00000593074 PYGMP11217 842 aa21.04■□□□□ 0.96
CLIP3-206ENST00000593074 PROZP22891 400 aa21.04■□□□□ 0.96
CLIP3-206ENST00000593074 ARHGAP1Q07960 439 aa21.04■□□□□ 0.96
CLIP3-206ENST00000593074 SPRYD7Q5W111 196 aa21.04■□□□□ 0.96
CLIP3-206ENST00000593074 ZNF467Q7Z7K2 595 aaPredicted RBP21.04■□□□□ 0.96
CLIP3-206ENST00000593074 ERAP1Q9NZ08 941 aa21.04■□□□□ 0.96
CLIP3-206ENST00000593074 PCDHB4Q9Y5E5 795 aa21.04■□□□□ 0.96
CLIP3-206ENST00000593074 CELF2O95319 508 aaKnown RBP21.03■□□□□ 0.96
CLIP3-206ENST00000593074 ASS1P00966 412 aaKnown RBP21.03■□□□□ 0.96
CLIP3-206ENST00000593074 CAPN2P17655 700 aa21.03■□□□□ 0.96
CLIP3-206ENST00000593074 CHRNA3P32297 505 aa21.03■□□□□ 0.96
CLIP3-206ENST00000593074 NSFP46459 744 aaKnown RBP21.03■□□□□ 0.96
CLIP3-206ENST00000593074 TTMPQ5BVD1 217 aa21.03■□□□□ 0.96
CLIP3-206ENST00000593074 TMEM270Q6UE05 265 aa21.03■□□□□ 0.96
CLIP3-206ENST00000593074 ZBTB33Q86T24 672 aa21.03■□□□□ 0.96
CLIP3-206ENST00000593074 UBR7Q8N806 425 aa21.03■□□□□ 0.96
CLIP3-206ENST00000593074 PRELID2Q8N945 189 aa21.03■□□□□ 0.96
CLIP3-206ENST00000593074 RBBP8NLQ8NC74 664 aaPredicted RBP21.03■□□□□ 0.96
CLIP3-206ENST00000593074 CPA5Q8WXQ8 436 aa21.03■□□□□ 0.96
CLIP3-206ENST00000593074 LRRC45Q96CN5 670 aa21.03■□□□□ 0.96
CLIP3-206ENST00000593074 TRIM51Q9BSJ1 452 aa21.03■□□□□ 0.96
CLIP3-206ENST00000593074 TCHPQ9BT92 498 aa21.03■□□□□ 0.96
CLIP3-206ENST00000593074 IMPG2Q9BZV3 1241 aa21.03■□□□□ 0.96
CLIP3-206ENST00000593074 RRAGCQ9HB90 399 aa21.03■□□□□ 0.96
CLIP3-206ENST00000593074 ANAPC7Q9UJX3 599 aa21.03■□□□□ 0.96
CLIP3-206ENST00000593074 CPSF3Q9UKF6 684 aaKnown RBP21.03■□□□□ 0.96
CLIP3-206ENST00000593074 MROH7Q68CQ1 1323 aa21.03■□□□□ 0.96
CLIP3-206ENST00000593074 SRCAPQ6ZRS2 3230 aa21.03■□□□□ 0.96
CLIP3-206ENST00000593074 GNA15P30679 374 aa21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms