RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 RHOP08100 348 aa13.01□□□□□ -0.33
LIG3-209ENST00000586435 MCF2P10911 925 aa13.01□□□□□ -0.33
LIG3-209ENST00000586435 KCNE1P15382 129 aa13.01□□□□□ -0.33
LIG3-209ENST00000586435 PRPHP41219 470 aa13.01□□□□□ -0.33
LIG3-209ENST00000586435 MAPK7Q13164 816 aa13.01□□□□□ -0.33
LIG3-209ENST00000586435 PTGDRQ13258 359 aa13.01□□□□□ -0.33
LIG3-209ENST00000586435 SNW1Q13573 536 aaKnown RBP13.01□□□□□ -0.33
LIG3-209ENST00000586435 SLC5A9Q2M3M2 681 aa13.01□□□□□ -0.33
LIG3-209ENST00000586435 SLC44A4Q53GD3 710 aa13.01□□□□□ -0.33
LIG3-209ENST00000586435 VARS2Q5ST30 1063 aaKnown RBP13.01□□□□□ -0.33
LIG3-209ENST00000586435 ERICH6BQ5W0A0 696 aa13.01□□□□□ -0.33
LIG3-209ENST00000586435 TCEAL8Q8IYN2 117 aa13.01□□□□□ -0.33
LIG3-209ENST00000586435 MAML2Q8IZL2 1156 aaPredicted RBP13.01□□□□□ -0.33
LIG3-209ENST00000586435 FAM184AQ8NB25 1140 aa13.01□□□□□ -0.33
LIG3-209ENST00000586435 KCNG4Q8TDN1 519 aa13.01□□□□□ -0.33
LIG3-209ENST00000586435 KXD1Q9BQD3 176 aa13.01□□□□□ -0.33
LIG3-209ENST00000586435 TIPINQ9BVW5 301 aa13.01□□□□□ -0.33
LIG3-209ENST00000586435 BCO2Q9BYV7 579 aa13.01□□□□□ -0.33
LIG3-209ENST00000586435 KMT5AQ9NQR1 393 aa13.01□□□□□ -0.33
LIG3-209ENST00000586435 FBXO4Q9UKT5 387 aa13.01□□□□□ -0.33
LIG3-209ENST00000586435 DNM3Q9UQ16 869 aa13.01□□□□□ -0.33
LIG3-209ENST00000586435 GPR179Q6PRD1 2367 aa13□□□□□ -0.33
LIG3-209ENST00000586435 E9PMD0 336 aa13□□□□□ -0.33
LIG3-209ENST00000586435 H7C4K7 107 aa13□□□□□ -0.33
LIG3-209ENST00000586435 I3L4J1 428 aa13□□□□□ -0.33
LIG3-209ENST00000586435 HIP1RO75146 1068 aa13□□□□□ -0.33
LIG3-209ENST00000586435 LRRN2O75325 713 aa13□□□□□ -0.33
LIG3-209ENST00000586435 MICAL2O94851 1124 aa13□□□□□ -0.33
LIG3-209ENST00000586435 LRG1P02750 347 aa13□□□□□ -0.33
LIG3-209ENST00000586435 ATF2P15336 505 aa13□□□□□ -0.33
LIG3-209ENST00000586435 PTPN2P17706 415 aa13□□□□□ -0.33
LIG3-209ENST00000586435 RPL9P32969 192 aaKnown RBP13□□□□□ -0.33
LIG3-209ENST00000586435 TOB1P50616 345 aaPredicted RBP13□□□□□ -0.33
LIG3-209ENST00000586435 MRPL58Q14197 206 aaKnown RBP13□□□□□ -0.33
LIG3-209ENST00000586435 NBR1Q14596 966 aa13□□□□□ -0.33
LIG3-209ENST00000586435 PRSS36Q5K4E3 855 aa13□□□□□ -0.33
LIG3-209ENST00000586435 KRT79Q5XKE5 535 aa13□□□□□ -0.33
LIG3-209ENST00000586435 RINT1Q6NUQ1 792 aa13□□□□□ -0.33
LIG3-209ENST00000586435 MPZL3Q6UWV2 235 aa13□□□□□ -0.33
LIG3-209ENST00000586435 C1orf186Q6ZWK4 172 aa13□□□□□ -0.33
LIG3-209ENST00000586435 KCTD17Q8N5Z5 321 aa13□□□□□ -0.33
LIG3-209ENST00000586435 DNASE1L2Q92874 299 aa13□□□□□ -0.33
LIG3-209ENST00000586435 ZMAT2Q96NC0 199 aaKnown RBP13□□□□□ -0.33
LIG3-209ENST00000586435 ACAP3Q96P50 834 aa13□□□□□ -0.33
LIG3-209ENST00000586435 NELL2Q99435 816 aa13□□□□□ -0.33
LIG3-209ENST00000586435 NTPCRQ9BSD7 190 aaKnown RBP13□□□□□ -0.33
LIG3-209ENST00000586435 TARS2Q9BW92 718 aaKnown RBP13□□□□□ -0.33
LIG3-209ENST00000586435 LTB4R2Q9NPC1 389 aa13□□□□□ -0.33
LIG3-209ENST00000586435 KCNG1Q9UIX4 513 aa13□□□□□ -0.33
LIG3-209ENST00000586435 PCDHB6Q9Y5E3 794 aa13□□□□□ -0.33
LIG3-209ENST00000586435 SPTLC1O15269 473 aa12.99□□□□□ -0.33
LIG3-209ENST00000586435 SEC24BO95487 1268 aa12.99□□□□□ -0.33
LIG3-209ENST00000586435 GUCY2CP25092 1073 aa12.99□□□□□ -0.33
LIG3-209ENST00000586435 ELF1P32519 619 aa12.99□□□□□ -0.33
LIG3-209ENST00000586435 RPS9P46781 194 aaKnown RBP12.99□□□□□ -0.33
LIG3-209ENST00000586435 OSTNP61366 133 aa12.99□□□□□ -0.33
LIG3-209ENST00000586435 UBXN2BQ14CS0 331 aa12.99□□□□□ -0.33
LIG3-209ENST00000586435 TPGS2Q68CL5 300 aa12.99□□□□□ -0.33
LIG3-209ENST00000586435 SUMF1Q8NBK3 374 aa12.99□□□□□ -0.33
LIG3-209ENST00000586435 SPIRE2Q8WWL2 714 aa12.99□□□□□ -0.33
LIG3-209ENST00000586435 ING5Q8WYH8 240 aa12.99□□□□□ -0.33
LIG3-209ENST00000586435 RUBCNQ92622 972 aa12.99□□□□□ -0.33
LIG3-209ENST00000586435 CLDN23Q96B33 292 aa12.99□□□□□ -0.33
LIG3-209ENST00000586435 ELSPBP1Q96BH3 223 aa12.99□□□□□ -0.33
LIG3-209ENST00000586435 SUSD3Q96L08 255 aa12.99□□□□□ -0.33
LIG3-209ENST00000586435 RUSC1Q9BVN2 902 aa12.99□□□□□ -0.33
LIG3-209ENST00000586435 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.99□□□□□ -0.33
LIG3-209ENST00000586435 MAFFQ9ULX9 164 aa12.99□□□□□ -0.33
LIG3-209ENST00000586435 NUB1Q9Y5A7 615 aa12.99□□□□□ -0.33
LIG3-209ENST00000586435 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.99□□□□□ -0.33
LIG3-209ENST00000586435 TICRRQ7Z2Z1 1910 aa12.99□□□□□ -0.33
LIG3-209ENST00000586435 FAM170BA6NMN3 283 aa12.98□□□□□ -0.33
LIG3-209ENST00000586435 PRRG1O14668 218 aa12.98□□□□□ -0.33
LIG3-209ENST00000586435 ZNF197O14709 1029 aa12.98□□□□□ -0.33
LIG3-209ENST00000586435 MEFVO15553 781 aaPredicted RBP12.98□□□□□ -0.33
LIG3-209ENST00000586435 LAMTOR5O43504 91 aa12.98□□□□□ -0.33
LIG3-209ENST00000586435 KINO60870 393 aaKnown RBP12.98□□□□□ -0.33
LIG3-209ENST00000586435 TOM1L1O75674 476 aa12.98□□□□□ -0.33
LIG3-209ENST00000586435 CEBPBP17676 345 aa12.98□□□□□ -0.33
LIG3-209ENST00000586435 FCARP24071 287 aa12.98□□□□□ -0.33
LIG3-209ENST00000586435 NOLC1Q14978 699 aaKnown RBP eCLIP12.98□□□□□ -0.33
LIG3-209ENST00000586435 ZBTB41Q5SVQ8 909 aa12.98□□□□□ -0.33
LIG3-209ENST00000586435 HYIQ5T013 277 aa12.98□□□□□ -0.33
LIG3-209ENST00000586435 ZNF280DQ6N043 979 aa12.98□□□□□ -0.33
LIG3-209ENST00000586435 POTEHQ6S545 545 aa12.98□□□□□ -0.33
LIG3-209ENST00000586435 TPRG1Q6ZUI0 275 aa12.98□□□□□ -0.33
LIG3-209ENST00000586435 KCNK18Q7Z418 384 aa12.98□□□□□ -0.33
LIG3-209ENST00000586435 KCNN1Q92952 543 aa12.98□□□□□ -0.33
LIG3-209ENST00000586435 MCRS1Q96EZ8 462 aa12.98□□□□□ -0.33
LIG3-209ENST00000586435 TCHPQ9BT92 498 aa12.98□□□□□ -0.33
LIG3-209ENST00000586435 MMTAG2Q9BU76 263 aaKnown RBP12.98□□□□□ -0.33
LIG3-209ENST00000586435 SPATA6Q9NWH7 488 aaPredicted RBP12.98□□□□□ -0.33
LIG3-209ENST00000586435 FBXL5Q9UKA1 691 aa12.98□□□□□ -0.33
LIG3-209ENST00000586435 MTF2Q9Y483 593 aaPredicted RBP12.98□□□□□ -0.33
LIG3-209ENST00000586435 PCDHGA2Q9Y5H1 932 aa12.98□□□□□ -0.33
LIG3-209ENST00000586435 INSL5Q9Y5Q6 135 aa12.98□□□□□ -0.33
LIG3-209ENST00000586435 PP2D1A8MPX8 630 aa12.97□□□□□ -0.33
LIG3-209ENST00000586435 SLC16A4O15374 487 aa12.97□□□□□ -0.33
LIG3-209ENST00000586435 NCAM2O15394 837 aa12.97□□□□□ -0.33
LIG3-209ENST00000586435 SEC24AO95486 1093 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms