RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 AIPL1Q9NZN9 384 aa16.46■□□□□ 0.23
SS18-215ENST00000580642 PARP2Q9UGN5 583 aa16.46■□□□□ 0.23
SS18-215ENST00000580642 HES2Q9Y543 173 aa16.46■□□□□ 0.23
SS18-215ENST00000580642 BZW2Q9Y6E2 419 aaKnown RBP16.46■□□□□ 0.23
SS18-215ENST00000580642 HOXA2O43364 376 aa16.45■□□□□ 0.22
SS18-215ENST00000580642 MGEA5O60502 916 aa16.45■□□□□ 0.22
SS18-215ENST00000580642 VNN1O95497 513 aa16.45■□□□□ 0.22
SS18-215ENST00000580642 P4HA1P13674 534 aa16.45■□□□□ 0.22
SS18-215ENST00000580642 ANXA13P27216 316 aa16.45■□□□□ 0.22
SS18-215ENST00000580642 PNPLA4P41247 253 aa16.45■□□□□ 0.22
SS18-215ENST00000580642 KCNJ6P48051 423 aa16.45■□□□□ 0.22
SS18-215ENST00000580642 JAM2P57087 298 aa16.45■□□□□ 0.22
SS18-215ENST00000580642 MEA1Q16626 185 aa16.45■□□□□ 0.22
SS18-215ENST00000580642 CNKSR3Q6P9H4 555 aa16.45■□□□□ 0.22
SS18-215ENST00000580642 TMTC1Q8IUR5 882 aa16.45■□□□□ 0.22
SS18-215ENST00000580642 RPUSD2Q8IZ73 545 aaKnown RBP16.45■□□□□ 0.22
SS18-215ENST00000580642 TTC39CQ8N584 583 aa16.45■□□□□ 0.22
SS18-215ENST00000580642 LRRC52Q8N7C0 313 aa16.45■□□□□ 0.22
SS18-215ENST00000580642 C1orf127Q8N9H9 656 aa16.45■□□□□ 0.22
SS18-215ENST00000580642 DBF4BQ8NFT6 615 aa16.45■□□□□ 0.22
SS18-215ENST00000580642 CPLX3Q8WVH0 158 aa16.45■□□□□ 0.22
SS18-215ENST00000580642 SEMA4DQ92854 862 aa16.45■□□□□ 0.22
SS18-215ENST00000580642 SPAG5Q96R06 1193 aa16.45■□□□□ 0.22
SS18-215ENST00000580642 OSBPL7Q9BZF2 842 aa16.45■□□□□ 0.22
SS18-215ENST00000580642 DPP3Q9NY33 737 aa16.45■□□□□ 0.22
SS18-215ENST00000580642 KANSL3Q9P2N6 904 aa16.45■□□□□ 0.22
SS18-215ENST00000580642 DNAJC12Q9UKB3 198 aa16.45■□□□□ 0.22
SS18-215ENST00000580642 KIAA0100Q14667 2235 aaKnown RBP16.44■□□□□ 0.22
SS18-215ENST00000580642 ENPP3O14638 875 aa16.44■□□□□ 0.22
SS18-215ENST00000580642 EPHB6O15197 1021 aa16.44■□□□□ 0.22
SS18-215ENST00000580642 ATF7P17544 494 aaPredicted RBP16.44■□□□□ 0.22
SS18-215ENST00000580642 EN2P19622 333 aaPredicted RBP16.44■□□□□ 0.22
SS18-215ENST00000580642 AKAP5P24588 427 aa16.44■□□□□ 0.22
SS18-215ENST00000580642 LRPAP1P30533 357 aa16.44■□□□□ 0.22
SS18-215ENST00000580642 STAT1P42224 750 aa16.44■□□□□ 0.22
SS18-215ENST00000580642 PTPN21Q16825 1174 aa16.44■□□□□ 0.22
SS18-215ENST00000580642 PHLDB3Q6NSJ2 640 aa16.44■□□□□ 0.22
SS18-215ENST00000580642 PDXDC1Q6P996 788 aa16.44■□□□□ 0.22
SS18-215ENST00000580642 AGMOQ6ZNB7 445 aa16.44■□□□□ 0.22
SS18-215ENST00000580642 RRAGAQ7L523 313 aa16.44■□□□□ 0.22
SS18-215ENST00000580642 RTN4RL1Q86UN2 441 aaPredicted RBP16.44■□□□□ 0.22
SS18-215ENST00000580642 TMEM199Q8N511 208 aa16.44■□□□□ 0.22
SS18-215ENST00000580642 CXorf38Q8TB03 319 aa16.44■□□□□ 0.22
SS18-215ENST00000580642 HELQQ8TDG4 1101 aa16.44■□□□□ 0.22
SS18-215ENST00000580642 RPS6KC1Q96S38 1066 aa16.44■□□□□ 0.22
SS18-215ENST00000580642 BAG1Q99933 345 aaPredicted RBP16.44■□□□□ 0.22
SS18-215ENST00000580642 RNF39Q9H2S5 420 aa16.44■□□□□ 0.22
SS18-215ENST00000580642 RSAD1Q9HA92 442 aa16.44■□□□□ 0.22
SS18-215ENST00000580642 ABHD14A-ACY1A0A1B0GW23 586 aa16.43■□□□□ 0.22
SS18-215ENST00000580642 THP07101 528 aa16.43■□□□□ 0.22
SS18-215ENST00000580642 FAM163BP0C2L3 166 aa16.43■□□□□ 0.22
SS18-215ENST00000580642 ACTN1P12814 892 aa16.43■□□□□ 0.22
SS18-215ENST00000580642 FERP16591 822 aa16.43■□□□□ 0.22
SS18-215ENST00000580642 RPL9P32969 192 aaKnown RBP16.43■□□□□ 0.22
SS18-215ENST00000580642 CYP2C18P33260 490 aa16.43■□□□□ 0.22
SS18-215ENST00000580642 ADKP55263 362 aaKnown RBP16.43■□□□□ 0.22
SS18-215ENST00000580642 YWHAEP62258 255 aaKnown RBP16.43■□□□□ 0.22
SS18-215ENST00000580642 NOP14P78316 857 aaKnown RBP16.43■□□□□ 0.22
SS18-215ENST00000580642 MYO1EQ12965 1108 aa16.43■□□□□ 0.22
SS18-215ENST00000580642 IKBKEQ14164 716 aa16.43■□□□□ 0.22
SS18-215ENST00000580642 SFMBT2Q5VUG0 894 aa16.43■□□□□ 0.22
SS18-215ENST00000580642 LMBRD2Q68DH5 695 aaPredicted RBP16.43■□□□□ 0.22
SS18-215ENST00000580642 IQCEQ6IPM2 695 aa16.43■□□□□ 0.22
SS18-215ENST00000580642 MFSD5Q6N075 450 aa16.43■□□□□ 0.22
SS18-215ENST00000580642 GLB1LQ6UWU2 654 aa16.43■□□□□ 0.22
SS18-215ENST00000580642 CYP26C1Q6V0L0 522 aa16.43■□□□□ 0.22
SS18-215ENST00000580642 DDX27Q96GQ7 796 aaKnown RBP16.43■□□□□ 0.22
SS18-215ENST00000580642 UROC1Q96N76 676 aa16.43■□□□□ 0.22
SS18-215ENST00000580642 ZMAT2Q96NC0 199 aaKnown RBP16.43■□□□□ 0.22
SS18-215ENST00000580642 PPP1R10Q96QC0 940 aaKnown RBP16.43■□□□□ 0.22
SS18-215ENST00000580642 APOL6Q9BWW8 343 aa16.43■□□□□ 0.22
SS18-215ENST00000580642 XYLT2Q9H1B5 865 aa16.43■□□□□ 0.22
SS18-215ENST00000580642 UBE2TQ9NPD8 197 aaPredicted RBP16.43■□□□□ 0.22
SS18-215ENST00000580642 SIX4Q9UIU6 781 aa16.43■□□□□ 0.22
SS18-215ENST00000580642 FHOD1Q9Y613 1164 aa16.43■□□□□ 0.22
SS18-215ENST00000580642 UMODL1Q5DID0 1318 aa16.43■□□□□ 0.22
SS18-215ENST00000580642 RALGAPA2Q2PPJ7 1873 aa16.42■□□□□ 0.22
SS18-215ENST00000580642 ANO9A1A5B4 782 aa16.42■□□□□ 0.22
SS18-215ENST00000580642 ARL5CA6NH57 179 aa16.42■□□□□ 0.22
SS18-215ENST00000580642 F8VZ95 297 aa16.42■□□□□ 0.22
SS18-215ENST00000580642 RNF225M0QZC1 329 aaPredicted RBP16.42■□□□□ 0.22
SS18-215ENST00000580642 ARHGAP6O43182 974 aa16.42■□□□□ 0.22
SS18-215ENST00000580642 CST3P01034 146 aaPredicted RBP16.42■□□□□ 0.22
SS18-215ENST00000580642 ITGB3P05106 788 aa16.42■□□□□ 0.22
SS18-215ENST00000580642 RAG1P15918 1043 aa16.42■□□□□ 0.22
SS18-215ENST00000580642 SOX5P35711 763 aa16.42■□□□□ 0.22
SS18-215ENST00000580642 PRKCIP41743 596 aa16.42■□□□□ 0.22
SS18-215ENST00000580642 CCL23P55773 120 aa16.42■□□□□ 0.22
SS18-215ENST00000580642 GRIK3Q13003 919 aa16.42■□□□□ 0.22
SS18-215ENST00000580642 CUL2Q13617 745 aa16.42■□□□□ 0.22
SS18-215ENST00000580642 CCDC170Q8IYT3 715 aa16.42■□□□□ 0.22
SS18-215ENST00000580642 PPM1KQ8N3J5 372 aa16.42■□□□□ 0.22
SS18-215ENST00000580642 GSTCDQ8NEC7 633 aa16.42■□□□□ 0.22
SS18-215ENST00000580642 LINC01599Q8WXQ3 324 aa16.42■□□□□ 0.22
SS18-215ENST00000580642 SHC3Q92529 594 aa16.42■□□□□ 0.22
SS18-215ENST00000580642 ZNF560Q96MR9 790 aa16.42■□□□□ 0.22
SS18-215ENST00000580642 HTATIP2Q9BUP3 242 aa16.42■□□□□ 0.22
SS18-215ENST00000580642 PPP1R12CQ9BZL4 782 aa16.42■□□□□ 0.22
SS18-215ENST00000580642 NIF3L1Q9GZT8 377 aa16.42■□□□□ 0.22
SS18-215ENST00000580642 CYP3A43Q9HB55 503 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms