RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ECHDC2Q86YB7 292 aa27.08■■□□□ 1.93
SHMT1-207ENST00000580002 TMEM139Q8IV31 216 aa27.08■■□□□ 1.93
SHMT1-207ENST00000580002 TRAIPQ9BWF2 469 aa27.08■■□□□ 1.93
SHMT1-207ENST00000580002 ABHD10Q9NUJ1 306 aa27.08■■□□□ 1.93
SHMT1-207ENST00000580002 APEX2Q9UBZ4 518 aa27.08■■□□□ 1.93
SHMT1-207ENST00000580002 A0A1W2PQJ5 194 aa27.07■■□□□ 1.92
SHMT1-207ENST00000580002 PPEF2O14830 753 aa27.07■■□□□ 1.92
SHMT1-207ENST00000580002 ZNF623O75123 536 aa27.07■■□□□ 1.92
SHMT1-207ENST00000580002 TNNC2P02585 160 aa27.07■■□□□ 1.92
SHMT1-207ENST00000580002 ITGB3P05106 788 aa27.07■■□□□ 1.92
SHMT1-207ENST00000580002 ZBED6P86452 979 aa27.07■■□□□ 1.92
SHMT1-207ENST00000580002 CCZ1BP86790 482 aa27.07■■□□□ 1.92
SHMT1-207ENST00000580002 CCZ1P86791 482 aaPredicted RBP27.07■■□□□ 1.92
SHMT1-207ENST00000580002 SOX4Q06945 474 aaPredicted RBP27.07■■□□□ 1.92
SHMT1-207ENST00000580002 RAPGEF1Q13905 1077 aa27.07■■□□□ 1.92
SHMT1-207ENST00000580002 CACNA2D4Q7Z3S7 1137 aa27.07■■□□□ 1.92
SHMT1-207ENST00000580002 HELQQ8TDG4 1101 aa27.07■■□□□ 1.92
SHMT1-207ENST00000580002 GOLGA2P5Q9HBQ8 144 aa27.07■■□□□ 1.92
SHMT1-207ENST00000580002 CACNG4Q9UBN1 327 aa27.07■■□□□ 1.92
SHMT1-207ENST00000580002 ENPP3O14638 875 aa27.07■■□□□ 1.92
SHMT1-207ENST00000580002 KRT19P08727 400 aa27.07■■□□□ 1.92
SHMT1-207ENST00000580002 ARHGAP44Q17R89 818 aa27.07■■□□□ 1.92
SHMT1-207ENST00000580002 PDXDC1Q6P996 788 aa27.07■■□□□ 1.92
SHMT1-207ENST00000580002 WDR59Q6PJI9 974 aa27.07■■□□□ 1.92
SHMT1-207ENST00000580002 ZNF598Q86UK7 904 aaKnown RBP27.07■■□□□ 1.92
SHMT1-207ENST00000580002 KREMEN1Q96MU8 473 aa27.07■■□□□ 1.92
SHMT1-207ENST00000580002 GPR88Q9GZN0 384 aa27.07■■□□□ 1.92
SHMT1-207ENST00000580002 DPP3Q9NY33 737 aa27.07■■□□□ 1.92
SHMT1-207ENST00000580002 NUB1Q9Y5A7 615 aa27.07■■□□□ 1.92
SHMT1-207ENST00000580002 CXCL10P02778 98 aa27.06■■□□□ 1.92
SHMT1-207ENST00000580002 IGFBP6P24592 240 aaPredicted RBP27.06■■□□□ 1.92
SHMT1-207ENST00000580002 AP3M2P53677 418 aa27.06■■□□□ 1.92
SHMT1-207ENST00000580002 COL13A1Q5TAT6 717 aaPredicted RBP27.06■■□□□ 1.92
SHMT1-207ENST00000580002 CCDC150Q8NCX0 1101 aa27.06■■□□□ 1.92
SHMT1-207ENST00000580002 DNAJC7Q99615 494 aa27.06■■□□□ 1.92
SHMT1-207ENST00000580002 ARID3AQ99856 593 aa27.06■■□□□ 1.92
SHMT1-207ENST00000580002 TSPYL2Q9H2G4 693 aaPredicted RBP27.06■■□□□ 1.92
SHMT1-207ENST00000580002 C2CD2Q9Y426 696 aa27.06■■□□□ 1.92
SHMT1-207ENST00000580002 CNGA4Q8IV77 575 aa27.05■■□□□ 1.92
SHMT1-207ENST00000580002 CD302Q8IX05 232 aa27.05■■□□□ 1.92
SHMT1-207ENST00000580002 PPM1KQ8N3J5 372 aa27.05■■□□□ 1.92
SHMT1-207ENST00000580002 OR8K1Q8NGG5 319 aa27.05■■□□□ 1.92
SHMT1-207ENST00000580002 CHP1Q99653 195 aa27.05■■□□□ 1.92
SHMT1-207ENST00000580002 XYLT2Q9H1B5 865 aa27.05■■□□□ 1.92
SHMT1-207ENST00000580002 EIF2AK3Q9NZJ5 1116 aaKnown RBP27.05■■□□□ 1.92
SHMT1-207ENST00000580002 ARL5CA6NH57 179 aa27.04■■□□□ 1.92
SHMT1-207ENST00000580002 TPM1P09493 284 aa27.04■■□□□ 1.92
SHMT1-207ENST00000580002 POLR2BP30876 1174 aaKnown RBP27.04■■□□□ 1.92
SHMT1-207ENST00000580002 FAM189BP81408 668 aa27.04■■□□□ 1.92
SHMT1-207ENST00000580002 SLC24A5Q71RS6 500 aa27.04■■□□□ 1.92
SHMT1-207ENST00000580002 SEPT8Q92599 483 aa27.04■■□□□ 1.92
SHMT1-207ENST00000580002 PYCARDQ9ULZ3 195 aa27.04■■□□□ 1.92
SHMT1-207ENST00000580002 SKILP12757 684 aa27.04■■□□□ 1.92
SHMT1-207ENST00000580002 KCNE1P15382 129 aa27.04■■□□□ 1.92
SHMT1-207ENST00000580002 SCNN1GP51170 649 aa27.04■■□□□ 1.92
SHMT1-207ENST00000580002 JAM2P57087 298 aa27.04■■□□□ 1.92
SHMT1-207ENST00000580002 DRAP1Q14919 205 aaPredicted RBP27.04■■□□□ 1.92
SHMT1-207ENST00000580002 TRIM44Q96DX7 344 aaPredicted RBP27.04■■□□□ 1.92
SHMT1-207ENST00000580002 NT5C1BQ96P26 610 aa27.04■■□□□ 1.92
SHMT1-207ENST00000580002 PANX2Q96RD6 677 aa27.04■■□□□ 1.92
SHMT1-207ENST00000580002 AGAP1Q9UPQ3 857 aa27.04■■□□□ 1.92
SHMT1-207ENST00000580002 LOC101059915A0A1B0GWI6 518 aaPredicted RBP27.03■■□□□ 1.92
SHMT1-207ENST00000580002 TIMP1P01033 207 aa27.03■■□□□ 1.92
SHMT1-207ENST00000580002 FGFR1P11362 822 aa27.03■■□□□ 1.92
SHMT1-207ENST00000580002 CSF2RAP15509 400 aa27.03■■□□□ 1.92
SHMT1-207ENST00000580002 RAB27AP51159 221 aa27.03■■□□□ 1.92
SHMT1-207ENST00000580002 ARID5AQ03989 594 aa27.03■■□□□ 1.92
SHMT1-207ENST00000580002 TRPC3Q13507 836 aa27.03■■□□□ 1.92
SHMT1-207ENST00000580002 EDEM3Q9BZQ6 932 aa27.03■■□□□ 1.92
SHMT1-207ENST00000580002 TANC1Q9C0D5 1861 aa27.03■■□□□ 1.92
SHMT1-207ENST00000580002 FOXN3O00409 490 aaPredicted RBP27.02■■□□□ 1.92
SHMT1-207ENST00000580002 KIAA0355O15063 1070 aa27.02■■□□□ 1.92
SHMT1-207ENST00000580002 ASS1P00966 412 aaKnown RBP27.02■■□□□ 1.92
SHMT1-207ENST00000580002 PLEKP08567 350 aaPredicted RBP27.02■■□□□ 1.92
SHMT1-207ENST00000580002 MTF1Q14872 753 aa27.02■■□□□ 1.92
SHMT1-207ENST00000580002 RABGGTAQ92696 567 aa27.02■■□□□ 1.92
SHMT1-207ENST00000580002 PPP1R10Q96QC0 940 aaKnown RBP27.02■■□□□ 1.92
SHMT1-207ENST00000580002 RSAD1Q9HA92 442 aa27.02■■□□□ 1.92
SHMT1-207ENST00000580002 FBXL5Q9UKA1 691 aa27.02■■□□□ 1.92
SHMT1-207ENST00000580002 POLIQ9UNA4 740 aa27.02■■□□□ 1.92
SHMT1-207ENST00000580002 INPP5FQ9Y2H2 1132 aa27.02■■□□□ 1.92
SHMT1-207ENST00000580002 GIT1Q9Y2X7 761 aa27.02■■□□□ 1.92
SHMT1-207ENST00000580002 DERAQ9Y315 318 aa27.02■■□□□ 1.92
SHMT1-207ENST00000580002 CLSTN1O94985 981 aa27.02■■□□□ 1.92
SHMT1-207ENST00000580002 POMCP01189 267 aa27.02■■□□□ 1.92
SHMT1-207ENST00000580002 NOP14P78316 857 aaKnown RBP27.02■■□□□ 1.92
SHMT1-207ENST00000580002 NAB2Q15742 525 aa27.02■■□□□ 1.92
SHMT1-207ENST00000580002 ZNF397Q8NF99 534 aaPredicted RBP27.02■■□□□ 1.92
SHMT1-207ENST00000580002 FTHL17Q9BXU8 183 aa27.02■■□□□ 1.92
SHMT1-207ENST00000580002 STK33Q9BYT3 514 aa27.02■■□□□ 1.92
SHMT1-207ENST00000580002 SOWAHDA6NJG2 315 aa27.01■■□□□ 1.91
SHMT1-207ENST00000580002 OFD1O75665 1012 aa27.01■■□□□ 1.91
SHMT1-207ENST00000580002 CAPN2P17655 700 aa27.01■■□□□ 1.91
SHMT1-207ENST00000580002 GATMP50440 423 aa27.01■■□□□ 1.91
SHMT1-207ENST00000580002 WDR44Q5JSH3 913 aa27.01■■□□□ 1.91
SHMT1-207ENST00000580002 CLLU1OSQ5K130 101 aa27.01■■□□□ 1.91
SHMT1-207ENST00000580002 LIN28BQ6ZN17 250 aaKnown RBP eCLIP27.01■■□□□ 1.91
SHMT1-207ENST00000580002 SPAG5Q96R06 1193 aa27.01■■□□□ 1.91
SHMT1-207ENST00000580002 BAG1Q99933 345 aaPredicted RBP27.01■■□□□ 1.91
SHMT1-207ENST00000580002 RALGAPA2Q2PPJ7 1873 aa27.01■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms