RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 ACCSQ96QU6 501 aa26.02■■□□□ 1.76
SHMT1-206ENST00000579558 IKZF4Q9H2S9 585 aa26.02■■□□□ 1.76
SHMT1-206ENST00000579558 TUBGCP4Q9UGJ1 667 aa26.02■■□□□ 1.76
SHMT1-206ENST00000579558 EXOC7Q9UPT5 735 aa26.02■■□□□ 1.76
SHMT1-206ENST00000579558 PCDHB13Q9Y5F0 798 aa26.02■■□□□ 1.76
SHMT1-206ENST00000579558 LACTBL1A8MY62 500 aa26.01■■□□□ 1.75
SHMT1-206ENST00000579558 POLR2DO15514 142 aaKnown RBP26.01■■□□□ 1.75
SHMT1-206ENST00000579558 TGM5O43548 720 aa26.01■■□□□ 1.75
SHMT1-206ENST00000579558 C1RP00736 705 aa26.01■■□□□ 1.75
SHMT1-206ENST00000579558 SPATA31D3P0C874 917 aa26.01■■□□□ 1.75
SHMT1-206ENST00000579558 ALADP13716 330 aa26.01■■□□□ 1.75
SHMT1-206ENST00000579558 SP100P23497 879 aaPredicted RBP26.01■■□□□ 1.75
SHMT1-206ENST00000579558 CASP5P51878 434 aa26.01■■□□□ 1.75
SHMT1-206ENST00000579558 ALCAMQ13740 583 aa26.01■■□□□ 1.75
SHMT1-206ENST00000579558 RESP18Q5W5W9 173 aa26.01■■□□□ 1.75
SHMT1-206ENST00000579558 SPATA31D4Q6ZUB0 917 aa26.01■■□□□ 1.75
SHMT1-206ENST00000579558 GPR149Q86SP6 731 aa26.01■■□□□ 1.75
SHMT1-206ENST00000579558 FEZF2Q8TBJ5 459 aa26.01■■□□□ 1.75
SHMT1-206ENST00000579558 FAM212AQ96EL1 285 aa26.01■■□□□ 1.75
SHMT1-206ENST00000579558 TSHZ2Q9NRE2 1034 aa26.01■■□□□ 1.75
SHMT1-206ENST00000579558 CPSF3Q9UKF6 684 aaKnown RBP26.01■■□□□ 1.75
SHMT1-206ENST00000579558 NUB1Q9Y5A7 615 aa26.01■■□□□ 1.75
SHMT1-206ENST00000579558 STYXL1Q9Y6J8 313 aa26.01■■□□□ 1.75
SHMT1-206ENST00000579558 DCXO43602 365 aa26■■□□□ 1.75
SHMT1-206ENST00000579558 TKTP29401 623 aaKnown RBP26■■□□□ 1.75
SHMT1-206ENST00000579558 KRT85P78386 507 aa26■■□□□ 1.75
SHMT1-206ENST00000579558 KCNA1Q09470 495 aa26■■□□□ 1.75
SHMT1-206ENST00000579558 HDAC7Q8WUI4 952 aa26■■□□□ 1.75
SHMT1-206ENST00000579558 POMGNT1Q8WZA1 660 aa26■■□□□ 1.75
SHMT1-206ENST00000579558 CLSTN3Q9BQT9 956 aa26■■□□□ 1.75
SHMT1-206ENST00000579558 FGFBP2Q9BYJ0 223 aa26■■□□□ 1.75
SHMT1-206ENST00000579558 TRIM9Q9C026 710 aa26■■□□□ 1.75
SHMT1-206ENST00000579558 PLEKHA4Q9H4M7 779 aa26■■□□□ 1.75
SHMT1-206ENST00000579558 AGO2Q9UKV8 859 aaKnown RBP26■■□□□ 1.75
SHMT1-206ENST00000579558 UBQLN1Q9UMX0 589 aaKnown RBP26■■□□□ 1.75
SHMT1-206ENST00000579558 NR2E1Q9Y466 385 aa26■■□□□ 1.75
SHMT1-206ENST00000579558 GTF3C5Q9Y5Q8 519 aaPredicted RBP26■■□□□ 1.75
SHMT1-206ENST00000579558 MTCL1Q9Y4B5 1905 aaKnown RBP25.99■■□□□ 1.75
SHMT1-206ENST00000579558 XPOTO43592 962 aaKnown RBP25.99■■□□□ 1.75
SHMT1-206ENST00000579558 ACOT2P49753 483 aa25.99■■□□□ 1.75
SHMT1-206ENST00000579558 ASIC1P78348 528 aa25.99■■□□□ 1.75
SHMT1-206ENST00000579558 POSTNQ15063 836 aa25.99■■□□□ 1.75
SHMT1-206ENST00000579558 LILRA6Q6PI73 481 aa25.99■■□□□ 1.75
SHMT1-206ENST00000579558 CMASQ8NFW8 434 aaPredicted RBP25.99■■□□□ 1.75
SHMT1-206ENST00000579558 MAGEF1Q9HAY2 307 aa25.99■■□□□ 1.75
SHMT1-206ENST00000579558 MUTYHQ9UIF7 546 aa25.99■■□□□ 1.75
SHMT1-206ENST00000579558 ADRB2P07550 413 aa25.98■■□□□ 1.75
SHMT1-206ENST00000579558 MCM4P33991 863 aa25.98■■□□□ 1.75
SHMT1-206ENST00000579558 ZBTB6Q15916 424 aa25.98■■□□□ 1.75
SHMT1-206ENST00000579558 C15orf39Q6ZRI6 1047 aa25.98■■□□□ 1.75
SHMT1-206ENST00000579558 ANKS3Q6ZW76 656 aa25.98■■□□□ 1.75
SHMT1-206ENST00000579558 CD302Q8IX05 232 aa25.98■■□□□ 1.75
SHMT1-206ENST00000579558 SYCP3Q8IZU3 236 aa25.98■■□□□ 1.75
SHMT1-206ENST00000579558 KREMEN2Q8NCW0 462 aa25.98■■□□□ 1.75
SHMT1-206ENST00000579558 LEO1Q8WVC0 666 aaPredicted RBP25.98■■□□□ 1.75
SHMT1-206ENST00000579558 CHAMP1Q96JM3 812 aa25.98■■□□□ 1.75
SHMT1-206ENST00000579558 SPATA32Q96LK8 384 aa25.98■■□□□ 1.75
SHMT1-206ENST00000579558 TSPAN18Q96SJ8 248 aa25.98■■□□□ 1.75
SHMT1-206ENST00000579558 MTRRQ9UBK8 725 aa25.98■■□□□ 1.75
SHMT1-206ENST00000579558 C2orf16Q68DN1 1984 aa25.97■■□□□ 1.75
SHMT1-206ENST00000579558 CCDC195A0A1B0GUA6 201 aa25.97■■□□□ 1.75
SHMT1-206ENST00000579558 ADAM12O43184 909 aa25.97■■□□□ 1.75
SHMT1-206ENST00000579558 RFPL2O75678 378 aa25.97■■□□□ 1.75
SHMT1-206ENST00000579558 CYP3A5P20815 502 aa25.97■■□□□ 1.75
SHMT1-206ENST00000579558 LRPAP1P30533 357 aa25.97■■□□□ 1.75
SHMT1-206ENST00000579558 JADE1Q6IE81 842 aa25.97■■□□□ 1.75
SHMT1-206ENST00000579558 TMEM130Q8N3G9 435 aa25.97■■□□□ 1.75
SHMT1-206ENST00000579558 C7orf25Q9BPX7 421 aa25.97■■□□□ 1.75
SHMT1-206ENST00000579558 PYM1Q9BRP8 204 aaKnown RBP25.97■■□□□ 1.75
SHMT1-206ENST00000579558 KCNH3Q9ULD8 1083 aa25.97■■□□□ 1.75
SHMT1-206ENST00000579558 ATP6V1DQ9Y5K8 247 aa25.97■■□□□ 1.75
SHMT1-206ENST00000579558 SYN3O14994 580 aa25.96■■□□□ 1.75
SHMT1-206ENST00000579558 PRPF6O94906 941 aaKnown RBP25.96■■□□□ 1.75
SHMT1-206ENST00000579558 ADSSP30520 456 aa25.96■■□□□ 1.75
SHMT1-206ENST00000579558 OR1D2P34982 312 aa25.96■■□□□ 1.75
SHMT1-206ENST00000579558 CNNM4Q6P4Q7 775 aa25.96■■□□□ 1.75
SHMT1-206ENST00000579558 STXBP4Q6ZWJ1 553 aa25.96■■□□□ 1.75
SHMT1-206ENST00000579558 HPS3Q969F9 1004 aa25.96■■□□□ 1.75
SHMT1-206ENST00000579558 SUSD3Q96L08 255 aa25.96■■□□□ 1.75
SHMT1-206ENST00000579558 FBXW11Q9UKB1 542 aa25.96■■□□□ 1.75
SHMT1-206ENST00000579558 BACE2Q9Y5Z0 518 aa25.96■■□□□ 1.75
SHMT1-206ENST00000579558 DENND4AQ7Z401 1863 aa25.96■■□□□ 1.75
SHMT1-206ENST00000579558 FAM86C2PA6NEL3 165 aa25.95■■□□□ 1.74
SHMT1-206ENST00000579558 C2CD4DB7Z1M9 353 aa25.95■■□□□ 1.74
SHMT1-206ENST00000579558 GUCY2FP51841 1108 aa25.95■■□□□ 1.74
SHMT1-206ENST00000579558 TMEM31Q5JXX7 168 aa25.95■■□□□ 1.74
SHMT1-206ENST00000579558 VARS2Q5ST30 1063 aaKnown RBP25.95■■□□□ 1.74
SHMT1-206ENST00000579558 CYP26C1Q6V0L0 522 aa25.95■■□□□ 1.74
SHMT1-206ENST00000579558 CCDC149Q6ZUS6 474 aa25.95■■□□□ 1.74
SHMT1-206ENST00000579558 BEST2Q8NFU1 509 aa25.95■■□□□ 1.74
SHMT1-206ENST00000579558 SMG7Q92540 1137 aaKnown RBP25.95■■□□□ 1.74
SHMT1-206ENST00000579558 TMEM206Q9H813 350 aa25.95■■□□□ 1.74
SHMT1-206ENST00000579558 ZDHHC7Q9NXF8 308 aa25.95■■□□□ 1.74
SHMT1-206ENST00000579558 CDY1Q9Y6F8 540 aa25.95■■□□□ 1.74
SHMT1-206ENST00000579558 ANK1P16157 1881 aa25.95■■□□□ 1.74
SHMT1-206ENST00000579558 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP25.94■■□□□ 1.74
SHMT1-206ENST00000579558 NFICP08651 508 aa25.94■■□□□ 1.74
SHMT1-206ENST00000579558 COL9A1P20849 921 aa25.94■■□□□ 1.74
SHMT1-206ENST00000579558 RAB33AQ14088 237 aa25.94■■□□□ 1.74
SHMT1-206ENST00000579558 TMEM132DQ14C87 1099 aa25.94■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms