RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 VCANP13611 3396 aa21.01■□□□□ 0.95
SS18-208ENST00000577751 PODXLO00592 558 aa21■□□□□ 0.95
SS18-208ENST00000577751 KIAA0391O15091 583 aaKnown RBP21■□□□□ 0.95
SS18-208ENST00000577751 SNRPFP62306 86 aaKnown RBP21■□□□□ 0.95
SS18-208ENST00000577751 RTP2Q5QGT7 225 aa21■□□□□ 0.95
SS18-208ENST00000577751 FAM171A1Q5VUB5 890 aa21■□□□□ 0.95
SS18-208ENST00000577751 JADE1Q6IE81 842 aa21■□□□□ 0.95
SS18-208ENST00000577751 KIAA1841Q6NSI8 718 aa21■□□□□ 0.95
SS18-208ENST00000577751 KANK3Q6NY19 840 aa21■□□□□ 0.95
SS18-208ENST00000577751 ARMCX5Q6P1M9 558 aa21■□□□□ 0.95
SS18-208ENST00000577751 KIAA0895Q8NCT3 520 aa21■□□□□ 0.95
SS18-208ENST00000577751 SLC22A17Q8WUG5 538 aa21■□□□□ 0.95
SS18-208ENST00000577751 B3GALT6Q96L58 329 aa21■□□□□ 0.95
SS18-208ENST00000577751 FAM213AQ9BRX8 229 aa21■□□□□ 0.95
SS18-208ENST00000577751 EMILIN2Q9BXX0 1053 aa21■□□□□ 0.95
SS18-208ENST00000577751 EXOC1Q9NV70 894 aa21■□□□□ 0.95
SS18-208ENST00000577751 BARX2Q9UMQ3 279 aaPredicted RBP21■□□□□ 0.95
SS18-208ENST00000577751 TCF20Q9UGU0 1960 aaKnown RBP20.99■□□□□ 0.95
SS18-208ENST00000577751 C2CD2LO14523 706 aa20.99■□□□□ 0.95
SS18-208ENST00000577751 XPOTO43592 962 aaKnown RBP20.99■□□□□ 0.95
SS18-208ENST00000577751 EXTL3O43909 919 aa20.99■□□□□ 0.95
SS18-208ENST00000577751 RHOBTB3O94955 611 aa20.99■□□□□ 0.95
SS18-208ENST00000577751 RPN1P04843 607 aaKnown RBP20.99■□□□□ 0.95
SS18-208ENST00000577751 FGFR3P22607 806 aa20.99■□□□□ 0.95
SS18-208ENST00000577751 FAM160A1Q05DH4 1040 aa20.99■□□□□ 0.95
SS18-208ENST00000577751 PUS10Q3MIT2 529 aaKnown RBP20.99■□□□□ 0.95
SS18-208ENST00000577751 SPATA1Q5VX52 437 aa20.99■□□□□ 0.95
SS18-208ENST00000577751 PPFIBP1Q86W92 1011 aa20.99■□□□□ 0.95
SS18-208ENST00000577751 FAM212AQ96EL1 285 aa20.99■□□□□ 0.95
SS18-208ENST00000577751 SAAL1Q96ER3 474 aa20.99■□□□□ 0.95
SS18-208ENST00000577751 TTPALQ9BTX7 342 aa20.99■□□□□ 0.95
SS18-208ENST00000577751 PCIF1Q9H4Z3 704 aa20.99■□□□□ 0.95
SS18-208ENST00000577751 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.99■□□□□ 0.95
SS18-208ENST00000577751 FNIP2Q9P278 1114 aa20.99■□□□□ 0.95
SS18-208ENST00000577751 C2CD2Q9Y426 696 aa20.99■□□□□ 0.95
SS18-208ENST00000577751 GRXCR2A6NFK2 248 aa20.98■□□□□ 0.95
SS18-208ENST00000577751 TEX28O15482 410 aa20.98■□□□□ 0.95
SS18-208ENST00000577751 SRGAP2BP0DMP2 458 aa20.98■□□□□ 0.95
SS18-208ENST00000577751 BRCC3P46736 316 aa20.98■□□□□ 0.95
SS18-208ENST00000577751 CLCN4P51793 760 aa20.98■□□□□ 0.95
SS18-208ENST00000577751 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.98■□□□□ 0.95
SS18-208ENST00000577751 BRSK2Q8IWQ3 736 aa20.98■□□□□ 0.95
SS18-208ENST00000577751 NELFCDQ8IXH7 590 aa20.98■□□□□ 0.95
SS18-208ENST00000577751 TMEM87AQ8NBN3 555 aa20.98■□□□□ 0.95
SS18-208ENST00000577751 RIN2Q8WYP3 895 aaPredicted RBP20.98■□□□□ 0.95
SS18-208ENST00000577751 PIK3R5Q8WYR1 880 aa20.98■□□□□ 0.95
SS18-208ENST00000577751 CASP10Q92851 521 aa20.98■□□□□ 0.95
SS18-208ENST00000577751 TIGD1Q96MW7 591 aa20.98■□□□□ 0.95
SS18-208ENST00000577751 AGPAT3Q9NRZ7 376 aa20.98■□□□□ 0.95
SS18-208ENST00000577751 CD207Q9UJ71 328 aa20.98■□□□□ 0.95
SS18-208ENST00000577751 PLXNA3P51805 1871 aa20.97■□□□□ 0.95
SS18-208ENST00000577751 TRAPPC3O43617 180 aa20.97■□□□□ 0.95
SS18-208ENST00000577751 IL18RAPO95256 599 aa20.97■□□□□ 0.95
SS18-208ENST00000577751 C1RP00736 705 aa20.97■□□□□ 0.95
SS18-208ENST00000577751 NFICP08651 508 aa20.97■□□□□ 0.95
SS18-208ENST00000577751 KLRC2P26717 231 aa20.97■□□□□ 0.95
SS18-208ENST00000577751 KCNB1Q14721 858 aa20.97■□□□□ 0.95
SS18-208ENST00000577751 KNOP1Q1ED39 458 aaKnown RBP20.97■□□□□ 0.95
SS18-208ENST00000577751 PTCRAQ6ISU1 281 aaPredicted RBP20.97■□□□□ 0.95
SS18-208ENST00000577751 ANKRD54Q6NXT1 300 aa20.97■□□□□ 0.95
SS18-208ENST00000577751 LLGL2Q6P1M3 1020 aa20.97■□□□□ 0.95
SS18-208ENST00000577751 NT5DC4Q86YG4 428 aa20.97■□□□□ 0.95
SS18-208ENST00000577751 GPD1LQ8N335 351 aa20.97■□□□□ 0.95
SS18-208ENST00000577751 TMEM130Q8N3G9 435 aa20.97■□□□□ 0.95
SS18-208ENST00000577751 SMRP1Q8NCR6 262 aa20.97■□□□□ 0.95
SS18-208ENST00000577751 LNX1Q8TBB1 728 aaPredicted RBP20.97■□□□□ 0.95
SS18-208ENST00000577751 CCDC34Q96HJ3 373 aa20.97■□□□□ 0.95
SS18-208ENST00000577751 FBXL18Q96ME1 805 aa20.97■□□□□ 0.95
SS18-208ENST00000577751 CGNQ9P2M7 1197 aaKnown RBP20.97■□□□□ 0.95
SS18-208ENST00000577751 GOLGA8IPA6NC78 632 aa20.96■□□□□ 0.95
SS18-208ENST00000577751 GOLGA8JA6NMD2 632 aa20.96■□□□□ 0.95
SS18-208ENST00000577751 I3L4J1 428 aa20.96■□□□□ 0.95
SS18-208ENST00000577751 MBTPS2O43462 519 aa20.96■□□□□ 0.95
SS18-208ENST00000577751 GADD45BO75293 160 aaPredicted RBP20.96■□□□□ 0.95
SS18-208ENST00000577751 EPCAMP16422 314 aa20.96■□□□□ 0.95
SS18-208ENST00000577751 WNT7BP56706 349 aa20.96■□□□□ 0.95
SS18-208ENST00000577751 CREMQ03060 361 aa20.96■□□□□ 0.95
SS18-208ENST00000577751 TMEM132DQ14C87 1099 aa20.96■□□□□ 0.95
SS18-208ENST00000577751 CLUL1Q15846 466 aa20.96■□□□□ 0.95
SS18-208ENST00000577751 SYCE2Q6PIF2 218 aa20.96■□□□□ 0.95
SS18-208ENST00000577751 PRSS55Q6UWB4 352 aaPredicted RBP20.96■□□□□ 0.95
SS18-208ENST00000577751 CEP57Q86XR8 500 aa20.96■□□□□ 0.95
SS18-208ENST00000577751 C12orf56Q8IXR9 622 aa20.96■□□□□ 0.95
SS18-208ENST00000577751 EFCAB13Q8IY85 973 aa20.96■□□□□ 0.95
SS18-208ENST00000577751 BEST2Q8NFU1 509 aa20.96■□□□□ 0.95
SS18-208ENST00000577751 CCDC47Q96A33 483 aaKnown RBP20.96■□□□□ 0.95
SS18-208ENST00000577751 S1PR5Q9H228 398 aa20.96■□□□□ 0.95
SS18-208ENST00000577751 KIAA1586Q9HCI6 787 aa20.96■□□□□ 0.95
SS18-208ENST00000577751 RBAKQ9NYW8 714 aaPredicted RBP20.96■□□□□ 0.95
SS18-208ENST00000577751 HSPBP1Q9NZL4 362 aa20.96■□□□□ 0.95
SS18-208ENST00000577751 A0A0C4DFX4 3053 aa20.96■□□□□ 0.95
SS18-208ENST00000577751 ADH1AP07327 375 aa20.95■□□□□ 0.94
SS18-208ENST00000577751 IL9P15248 144 aa20.95■□□□□ 0.94
SS18-208ENST00000577751 HOXB8P17481 243 aaPredicted RBP20.95■□□□□ 0.94
SS18-208ENST00000577751 AARSP49588 968 aaKnown RBP eCLIP20.95■□□□□ 0.94
SS18-208ENST00000577751 GUCY2FP51841 1108 aa20.95■□□□□ 0.94
SS18-208ENST00000577751 SMAD4Q13485 552 aaKnown RBP20.95■□□□□ 0.94
SS18-208ENST00000577751 PDXDC1Q6P996 788 aa20.95■□□□□ 0.94
SS18-208ENST00000577751 HS2ST1Q7LGA3 356 aa20.95■□□□□ 0.94
SS18-208ENST00000577751 ELOA2Q8IYF1 753 aaPredicted RBP20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms