RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 CDCA3Q99618 268 aaPredicted RBP10.36□□□□□ -0.75
CCDC40-214ENST00000575431 TCF25Q9BQ70 676 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 MKNK1Q9BUB5 465 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 HERC2P3Q9BVR0 1158 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 CXCL16Q9H2A7 254 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 ENTPD7Q9NQZ7 604 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.36□□□□□ -0.75
CCDC40-214ENST00000575431 MRPL17Q9NRX2 175 aaKnown RBP10.36□□□□□ -0.75
CCDC40-214ENST00000575431 MARCH5Q9NX47 278 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 R3HCC1Q9Y3T6 440 aaKnown RBP10.36□□□□□ -0.75
CCDC40-214ENST00000575431 NUB1Q9Y5A7 615 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 PODXLO00592 558 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 FSCN2O14926 492 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 CETN3O15182 167 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 KIF4AO95239 1232 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 CXCL14O95715 111 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 C1RP00736 705 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 TNNC2P02585 160 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 NFICP08651 508 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 TMEM191BP0C7N4 346 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 CCNE1P24864 410 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 DNAJB1P25685 340 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 PSMC2P35998 433 aaKnown RBP10.35□□□□□ -0.75
CCDC40-214ENST00000575431 PNPLA4P41247 253 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 GLUD2P49448 558 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 ERVFC1P60507 584 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 TFAMQ00059 246 aaKnown RBP10.35□□□□□ -0.75
CCDC40-214ENST00000575431 CREMQ03060 361 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 SOX4Q06945 474 aaPredicted RBP10.35□□□□□ -0.75
CCDC40-214ENST00000575431 SPAG1Q07617 926 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 CYP24A1Q07973 514 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 DUOXA2Q1HG44 320 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 CT47A1Q5JQC4 288 aaPredicted RBP10.35□□□□□ -0.75
CCDC40-214ENST00000575431 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.35□□□□□ -0.75
CCDC40-214ENST00000575431 INTS8Q75QN2 995 aaKnown RBP10.35□□□□□ -0.75
CCDC40-214ENST00000575431 TMEM173Q86WV6 379 aaPredicted RBP10.35□□□□□ -0.75
CCDC40-214ENST00000575431 WDR49Q8IV35 697 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 SMYD4Q8IYR2 804 aaPredicted RBP10.35□□□□□ -0.75
CCDC40-214ENST00000575431 MRPL43Q8N983 215 aaKnown RBP10.35□□□□□ -0.75
CCDC40-214ENST00000575431 RDH13Q8NBN7 331 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 GPT2Q8TD30 523 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 TMC2Q8TDI7 906 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 SYAP1Q96A49 352 aaPredicted RBP10.35□□□□□ -0.75
CCDC40-214ENST00000575431 ANKRD36BP1Q96IX9 119 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 ZBP1Q9H171 429 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 PDE11AQ9HCR9 933 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 CHST7Q9NS84 486 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 INTS13Q9NVM9 706 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 DPP3Q9NY33 737 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 DACH1Q9UI36 760 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 ITGA11Q9UKX5 1188 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 ANK1P16157 1881 aa10.35□□□□□ -0.75
CCDC40-214ENST00000575431 ANO9A1A5B4 782 aa10.34□□□□□ -0.75
CCDC40-214ENST00000575431 BIN1O00499 593 aa10.34□□□□□ -0.75
CCDC40-214ENST00000575431 PIRO00625 290 aa10.34□□□□□ -0.75
CCDC40-214ENST00000575431 IKBKBO14920 756 aa10.34□□□□□ -0.75
CCDC40-214ENST00000575431 SYN3O14994 580 aa10.34□□□□□ -0.75
CCDC40-214ENST00000575431 FGFR1OPO95684 399 aaKnown RBP10.34□□□□□ -0.75
CCDC40-214ENST00000575431 SRGAP2BP0DMP2 458 aa10.34□□□□□ -0.75
CCDC40-214ENST00000575431 KRT13P13646 458 aa10.34□□□□□ -0.75
CCDC40-214ENST00000575431 TNNI1P19237 187 aa10.34□□□□□ -0.75
CCDC40-214ENST00000575431 FGFR3P22607 806 aa10.34□□□□□ -0.75
CCDC40-214ENST00000575431 RBP5P82980 135 aa10.34□□□□□ -0.75
CCDC40-214ENST00000575431 DSG1Q02413 1049 aa10.34□□□□□ -0.75
CCDC40-214ENST00000575431 FAM171A1Q5VUB5 890 aa10.34□□□□□ -0.75
CCDC40-214ENST00000575431 C9orf57Q5W0N0 161 aa10.34□□□□□ -0.75
CCDC40-214ENST00000575431 CEP135Q66GS9 1140 aa10.34□□□□□ -0.75
CCDC40-214ENST00000575431 ISM2Q6H9L7 571 aa10.34□□□□□ -0.75
CCDC40-214ENST00000575431 PPFIBP1Q86W92 1011 aa10.34□□□□□ -0.75
CCDC40-214ENST00000575431 LRRC52Q8N7C0 313 aa10.34□□□□□ -0.75
CCDC40-214ENST00000575431 APPL2Q8NEU8 664 aa10.34□□□□□ -0.75
CCDC40-214ENST00000575431 MAFAQ8NHW3 353 aaPredicted RBP10.34□□□□□ -0.75
CCDC40-214ENST00000575431 BCL7CQ8WUZ0 217 aaPredicted RBP10.34□□□□□ -0.75
CCDC40-214ENST00000575431 C18orf25Q96B23 403 aaPredicted RBP10.34□□□□□ -0.75
CCDC40-214ENST00000575431 ZNF560Q96MR9 790 aa10.34□□□□□ -0.75
CCDC40-214ENST00000575431 PAAF1Q9BRP4 392 aa10.34□□□□□ -0.75
CCDC40-214ENST00000575431 TTPALQ9BTX7 342 aa10.34□□□□□ -0.75
CCDC40-214ENST00000575431 EMILIN2Q9BXX0 1053 aa10.34□□□□□ -0.75
CCDC40-214ENST00000575431 TLE6Q9H808 572 aa10.34□□□□□ -0.75
CCDC40-214ENST00000575431 GOLGA2P5Q9HBQ8 144 aa10.34□□□□□ -0.75
CCDC40-214ENST00000575431 TUBGCP4Q9UGJ1 667 aa10.34□□□□□ -0.75
CCDC40-214ENST00000575431 C2orf71A6NGG8 1288 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 PPP1R3GB7ZBB8 358 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 STX10O60499 249 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 DLATP10515 647 aaKnown RBP10.33□□□□□ -0.76
CCDC40-214ENST00000575431 EPB41P11171 864 aaKnown RBP10.33□□□□□ -0.76
CCDC40-214ENST00000575431 BMP6P22004 513 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 IRS1P35568 1242 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 AARSP49588 968 aaKnown RBP eCLIP10.33□□□□□ -0.76
CCDC40-214ENST00000575431 TAF6P49848 677 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 LILRA4P59901 499 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 MCCD1P59942 119 aaPredicted RBP10.33□□□□□ -0.76
CCDC40-214ENST00000575431 CLDN10P78369 228 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 PAK1Q13153 545 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 SV2CQ496J9 727 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 TCEAL5Q5H9L2 206 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 CCDC183Q5T5S1 534 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 KIAA0319Q5VV43 1072 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 ANKRD40Q6AI12 368 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 ELMSAN1Q6PJG2 1045 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms