RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 MCF2P10911 925 aa23.09■■□□□ 1.29
VPS53-216ENST00000574029 VARS2Q5ST30 1063 aaKnown RBP23.09■■□□□ 1.29
VPS53-216ENST00000574029 KRT79Q5XKE5 535 aa23.09■■□□□ 1.29
VPS53-216ENST00000574029 RINT1Q6NUQ1 792 aa23.09■■□□□ 1.29
VPS53-216ENST00000574029 ZC3H14Q6PJT7 736 aaKnown RBP23.09■■□□□ 1.29
VPS53-216ENST00000574029 C1orf186Q6ZWK4 172 aa23.09■■□□□ 1.29
VPS53-216ENST00000574029 MAML2Q8IZL2 1156 aaPredicted RBP23.09■■□□□ 1.29
VPS53-216ENST00000574029 ING5Q8WYH8 240 aa23.09■■□□□ 1.29
VPS53-216ENST00000574029 ACAP3Q96P50 834 aa23.09■■□□□ 1.29
VPS53-216ENST00000574029 RUSC1Q9BVN2 902 aa23.09■■□□□ 1.29
VPS53-216ENST00000574029 OSBPL6Q9BZF3 934 aa23.09■■□□□ 1.29
VPS53-216ENST00000574029 C17orf75Q9HAS0 396 aa23.09■■□□□ 1.29
VPS53-216ENST00000574029 KMT5AQ9NQR1 393 aa23.09■■□□□ 1.29
VPS53-216ENST00000574029 GDE1Q9NZC3 331 aa23.09■■□□□ 1.29
VPS53-216ENST00000574029 CNTN3Q9P232 1028 aa23.09■■□□□ 1.29
VPS53-216ENST00000574029 WDR27A2RRH5 827 aa23.08■■□□□ 1.29
VPS53-216ENST00000574029 SYN3O14994 580 aa23.08■■□□□ 1.29
VPS53-216ENST00000574029 ECI2O75521 394 aa23.08■■□□□ 1.29
VPS53-216ENST00000574029 PRPHP41219 470 aa23.08■■□□□ 1.29
VPS53-216ENST00000574029 ID4P47928 161 aa23.08■■□□□ 1.29
VPS53-216ENST00000574029 SLC5A9Q2M3M2 681 aa23.08■■□□□ 1.29
VPS53-216ENST00000574029 NTPCRQ9BSD7 190 aaKnown RBP23.08■■□□□ 1.29
VPS53-216ENST00000574029 MMTAG2Q9BU76 263 aaKnown RBP23.08■■□□□ 1.29
VPS53-216ENST00000574029 MEFVO15553 781 aaPredicted RBP23.07■■□□□ 1.28
VPS53-216ENST00000574029 ATF2P15336 505 aa23.07■■□□□ 1.28
VPS53-216ENST00000574029 PTPN2P17706 415 aa23.07■■□□□ 1.28
VPS53-216ENST00000574029 RPL9P32969 192 aaKnown RBP23.07■■□□□ 1.28
VPS53-216ENST00000574029 MRPL58Q14197 206 aaKnown RBP23.07■■□□□ 1.28
VPS53-216ENST00000574029 POTEHQ6S545 545 aa23.07■■□□□ 1.28
VPS53-216ENST00000574029 MPZL3Q6UWV2 235 aa23.07■■□□□ 1.28
VPS53-216ENST00000574029 ERMP1Q7Z2K6 904 aa23.07■■□□□ 1.28
VPS53-216ENST00000574029 KCNK18Q7Z418 384 aa23.07■■□□□ 1.28
VPS53-216ENST00000574029 MCRS1Q96EZ8 462 aa23.07■■□□□ 1.28
VPS53-216ENST00000574029 KIF2CQ99661 725 aa23.07■■□□□ 1.28
VPS53-216ENST00000574029 TCHPQ9BT92 498 aa23.07■■□□□ 1.28
VPS53-216ENST00000574029 TIPINQ9BVW5 301 aa23.07■■□□□ 1.28
VPS53-216ENST00000574029 BCO2Q9BYV7 579 aa23.07■■□□□ 1.28
VPS53-216ENST00000574029 MTF2Q9Y483 593 aaPredicted RBP23.07■■□□□ 1.28
VPS53-216ENST00000574029 H7C4K7 107 aa23.06■■□□□ 1.28
VPS53-216ENST00000574029 LRG1P02750 347 aa23.06■■□□□ 1.28
VPS53-216ENST00000574029 CDC25AP30304 524 aa23.06■■□□□ 1.28
VPS53-216ENST00000574029 DTHD1Q6ZMT9 781 aa23.06■■□□□ 1.28
VPS53-216ENST00000574029 TCEAL8Q8IYN2 117 aa23.06■■□□□ 1.28
VPS53-216ENST00000574029 PLA2G2FQ9BZM2 168 aa23.06■■□□□ 1.28
VPS53-216ENST00000574029 LTB4R2Q9NPC1 389 aa23.06■■□□□ 1.28
VPS53-216ENST00000574029 EIF4ENIF1Q9NRA8 985 aaKnown RBP23.06■■□□□ 1.28
VPS53-216ENST00000574029 PRRG1O14668 218 aa23.05■■□□□ 1.28
VPS53-216ENST00000574029 SLC16A4O15374 487 aa23.05■■□□□ 1.28
VPS53-216ENST00000574029 CEBPBP17676 345 aa23.05■■□□□ 1.28
VPS53-216ENST00000574029 GUCY2CP25092 1073 aa23.05■■□□□ 1.28
VPS53-216ENST00000574029 ELF1P32519 619 aa23.05■■□□□ 1.28
VPS53-216ENST00000574029 UBXN2BQ14CS0 331 aa23.05■■□□□ 1.28
VPS53-216ENST00000574029 ZNF528Q3MIS6 628 aa23.05■■□□□ 1.28
VPS53-216ENST00000574029 PRSS36Q5K4E3 855 aa23.05■■□□□ 1.28
VPS53-216ENST00000574029 C18orf25Q96B23 403 aaPredicted RBP23.05■■□□□ 1.28
VPS53-216ENST00000574029 ZBTB45Q96K62 511 aaPredicted RBP23.05■■□□□ 1.28
VPS53-216ENST00000574029 FBXL5Q9UKA1 691 aa23.05■■□□□ 1.28
VPS53-216ENST00000574029 NUB1Q9Y5A7 615 aa23.05■■□□□ 1.28
VPS53-216ENST00000574029 SPTBN4Q9H254 2564 aa23.05■■□□□ 1.28
VPS53-216ENST00000574029 MYH11P35749 1972 aa23.04■■□□□ 1.28
VPS53-216ENST00000574029 FAM170BA6NMN3 283 aa23.04■■□□□ 1.28
VPS53-216ENST00000574029 SFI1A8K8P3 1242 aa23.04■■□□□ 1.28
VPS53-216ENST00000574029 SEC24AO95486 1093 aa23.04■■□□□ 1.28
VPS53-216ENST00000574029 MAGEA9P43362 315 aa23.04■■□□□ 1.28
VPS53-216ENST00000574029 ARPP19P56211 112 aa23.04■■□□□ 1.28
VPS53-216ENST00000574029 TPGS2Q68CL5 300 aa23.04■■□□□ 1.28
VPS53-216ENST00000574029 SPIRE2Q8WWL2 714 aa23.04■■□□□ 1.28
VPS53-216ENST00000574029 ELSPBP1Q96BH3 223 aa23.04■■□□□ 1.28
VPS53-216ENST00000574029 SUSD3Q96L08 255 aa23.04■■□□□ 1.28
VPS53-216ENST00000574029 CYP4F11Q9HBI6 524 aa23.04■■□□□ 1.28
VPS53-216ENST00000574029 SPATA6Q9NWH7 488 aaPredicted RBP23.04■■□□□ 1.28
VPS53-216ENST00000574029 FBXO4Q9UKT5 387 aa23.04■■□□□ 1.28
VPS53-216ENST00000574029 INSL5Q9Y5Q6 135 aa23.04■■□□□ 1.28
VPS53-216ENST00000574029 CACNA1IQ9P0X4 2223 aa23.04■■□□□ 1.28
VPS53-216ENST00000574029 GVINP1Q7Z2Y8 2422 aa23.03■■□□□ 1.28
VPS53-216ENST00000574029 TOM1L1O75674 476 aa23.03■■□□□ 1.28
VPS53-216ENST00000574029 MICAL2O94851 1124 aa23.03■■□□□ 1.28
VPS53-216ENST00000574029 CD72P21854 359 aa23.03■■□□□ 1.28
VPS53-216ENST00000574029 SLC10A6Q3KNW5 377 aa23.03■■□□□ 1.28
VPS53-216ENST00000574029 HYIQ5T013 277 aa23.03■■□□□ 1.28
VPS53-216ENST00000574029 TANGO2Q6ICL3 276 aa23.03■■□□□ 1.28
VPS53-216ENST00000574029 BORCS6Q96GS4 357 aa23.03■■□□□ 1.28
VPS53-216ENST00000574029 NELL2Q99435 816 aa23.03■■□□□ 1.28
VPS53-216ENST00000574029 CORO1BQ9BR76 489 aa23.03■■□□□ 1.28
VPS53-216ENST00000574029 KCNG1Q9UIX4 513 aa23.03■■□□□ 1.28
VPS53-216ENST00000574029 LAMTOR5O43504 91 aa23.02■■□□□ 1.28
VPS53-216ENST00000574029 HARSP12081 509 aaKnown RBP23.02■■□□□ 1.28
VPS53-216ENST00000574029 PLS3P13797 630 aa23.02■■□□□ 1.28
VPS53-216ENST00000574029 FCARP24071 287 aa23.02■■□□□ 1.28
VPS53-216ENST00000574029 STRN3Q13033 797 aa23.02■■□□□ 1.28
VPS53-216ENST00000574029 NOLC1Q14978 699 aaKnown RBP eCLIP23.02■■□□□ 1.28
VPS53-216ENST00000574029 CTXN3Q4LDR2 81 aa23.02■■□□□ 1.28
VPS53-216ENST00000574029 ZBTB41Q5SVQ8 909 aa23.02■■□□□ 1.28
VPS53-216ENST00000574029 ZPBP2Q6X784 338 aa23.02■■□□□ 1.28
VPS53-216ENST00000574029 TPRG1Q6ZUI0 275 aa23.02■■□□□ 1.28
VPS53-216ENST00000574029 KCTD17Q8N5Z5 321 aa23.02■■□□□ 1.28
VPS53-216ENST00000574029 SYT2Q8N9I0 419 aaPredicted RBP23.02■■□□□ 1.28
VPS53-216ENST00000574029 TMEM161BQ8NDZ6 487 aa23.02■■□□□ 1.28
VPS53-216ENST00000574029 DDX12PQ92771 950 aa23.02■■□□□ 1.28
VPS53-216ENST00000574029 CLDN23Q96B33 292 aa23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms